Updated the paths from comments.

app/Config/core.php

@@ -65,7 +65,7 @@
  * - `handler` - callback - The callback to handle exceptions. You can set this to any callback type,
  *   including anonymous functions.
  * - `renderer` - string - The class responsible for rendering uncaught exceptions.  If you choose a custom class you
- *   should place the file for that class in app/libs. This class needs to implement a render method.
+ *   should place the file for that class in app/Error. This class needs to implement a render method.
  * - `log` - boolean - Should Exceptions be logged?
  *
  * @see ErrorHandler for more information on exception handling and configuration.
@@ -165,10 +165,10 @@
  * - 'database' - Uses CakePHP's database sessions.
  * - 'cache' - Use the Cache class to save sessions.
  *
- * To define a custom session handler, save it at /app/libs/session/<name>.php.
+ * To define a custom session handler, save it at /app/Model/Datasource/Session/<name>.php.
  * Make sure the class implements `CakeSessionHandlerInterface` and set Session.handler to <name>
  *
- * To use database sessions, run the app/config/schema/sessions.php schema using
+ * To use database sessions, run the app/Config/Schema/sessions.php schema using
  * the cake shell command: cake schema create Sessions
  *
  */

app/Config/database.php.default

@@ -35,7 +35,7 @@
  *		Database/Oracle		- Oracle 8 and higher
  *
  * You can add custom database drivers (or override existing drivers) by adding the
- * appropriate file to app/models/datasources/database.  Drivers should be named 'MyDriver.php',
+ * appropriate file to app/Model/Datasource/Database.  Drivers should be named 'MyDriver.php',
  *
  *
  * persistent => true / false

app/Config/routes.php

@@ -23,7 +23,7 @@
 /**
  * Here, we are connecting '/' (base path) to controller called 'Pages',
  * its action called 'display', and we pass a param to select the view file
- * to use (in this case, /app/views/pages/home.ctp)...
+ * to use (in this case, /app/View/Pages/home.ctp)...
  */
 	Router::connect('/', array('controller' => 'pages', 'action' => 'display', 'home'));
 /**

index.php

@@ -4,7 +4,7 @@
  *
  *  This file collects requests if:
  *	- no mod_rewrite is avilable or .htaccess files are not supported
- *  - requires App.baseUrl to be uncommented in app/config/core.php
+ *  - requires App.baseUrl to be uncommented in app/Config/core.php
  *	- app/webroot is not set as a document root.
  *
  * PHP 5

lib/Cake/Cache/Cache.php

@@ -106,7 +106,7 @@ class Cache {
  * - `user` Used by Xcache.  Username for XCache
  * - `password` Used by Xcache.  Password for XCache
  *
- * @see app/config/core.php for configuration settings
+ * @see app/Config/core.php for configuration settings
  * @param string $name Name of the configuration
  * @param array $settings Optional associative array of settings passed to the engine
  * @return array(engine, settings) on success, false on failure

lib/Cake/Console/Command/Task/ProjectTask.php

@@ -308,7 +308,7 @@ class ProjectTask extends Shell {
 	}
 
 /**
- * Enables Configure::read('Routing.prefixes') in /app/config/core.php
+ * Enables Configure::read('Routing.prefixes') in /app/Config/core.php
  *
  * @param string $name Name to use as admin routing
  * @return boolean Success
@@ -358,15 +358,15 @@ class ProjectTask extends Shell {
 		}
 		if ($this->interactive) {
 			$this->hr();
-			$this->out(__d('cake_console', 'You need to enable Configure::write(\'Routing.prefixes\',array(\'admin\')) in /app/config/core.php to use prefix routing.'));
+			$this->out(__d('cake_console', 'You need to enable Configure::write(\'Routing.prefixes\',array(\'admin\')) in /app/Config/core.php to use prefix routing.'));
 			$this->out(__d('cake_console', 'What would you like the prefix route to be?'));
 			$this->out(__d('cake_console', 'Example: www.example.com/admin/controller'));
 			while ($admin == '') {
 				$admin = $this->in(__d('cake_console', 'Enter a routing prefix:'), null, 'admin');
 			}
 			if ($this->cakeAdmin($admin) !== true) {
-				$this->out(__d('cake_console', '<error>Unable to write to</error> /app/config/core.php.'));
+				$this->out(__d('cake_console', '<error>Unable to write to</error> /app/Config/core.php.'));
-				$this->out(__d('cake_console', 'You need to enable Configure::write(\'Routing.prefixes\',array(\'admin\')) in /app/config/core.php to use prefix routing.'));
+				$this->out(__d('cake_console', 'You need to enable Configure::write(\'Routing.prefixes\',array(\'admin\')) in /app/Config/core.php to use prefix routing.'));
 				$this->_stop();
 			}
 			return $admin . '_';

lib/Cake/Console/Templates/skel/Config/core.php

@@ -65,7 +65,7 @@
  * - `handler` - callback - The callback to handle exceptions. You can set this to any callback type,
  *   including anonymous functions.
  * - `renderer` - string - The class responsible for rendering uncaught exceptions.  If you choose a custom class you
- *   should place the file for that class in app/libs. This class needs to implement a render method.
+ *   should place the file for that class in app/Error. This class needs to implement a render method.
  * - `log` - boolean - Should Exceptions be logged?
  *
  * @see ErrorHandler for more information on exception handling and configuration.
@@ -165,10 +165,10 @@
  * - 'database' - Uses CakePHP's database sessions.
  * - 'cache' - Use the Cache class to save sessions.
  *
- * To define a custom session handler, save it at /app/libs/session/<name>.php.
+ * To define a custom session handler, save it at /app/Model/Datasource/Session/<name>.php.
  * Make sure the class implements `CakeSessionHandlerInterface` and set Session.handler to <name>
  *
- * To use database sessions, run the app/config/schema/sessions.php schema using
+ * To use database sessions, run the app/Config/Schema/sessions.php schema using
  * the cake shell command: cake schema create Sessions
  *
  */

lib/Cake/Console/Templates/skel/Config/database.php.default

@@ -35,7 +35,7 @@
  *		Database/Oracle		- Oracle 8 and higher
  *
  * You can add custom database drivers (or override existing drivers) by adding the
- * appropriate file to app/models/datasources/database.  Drivers should be named 'MyDriver.php',
+ * appropriate file to app/Model/Datasource/Database.  Drivers should be named 'MyDriver.php',
  *
  *
  * persistent => true / false

lib/Cake/Console/Templates/skel/Config/routes.php

@@ -24,7 +24,7 @@
 /**
  * Here, we are connecting '/' (base path) to controller called 'Pages',
  * its action called 'display', and we pass a param to select the view file
- * to use (in this case, /app/views/pages/home.ctp)...
+ * to use (in this case, /app/View/Pages/home.ctp)...
  */
 	Router::connect('/', array('controller' => 'pages', 'action' => 'display', 'home'));
 

lib/Cake/Controller/Component/RequestHandlerComponent.php

@@ -133,9 +133,9 @@ class RequestHandlerComponent extends Component {
  * - Disabling layout rendering for Ajax requests (based on the HTTP_X_REQUESTED_WITH header)
  * - If Router::parseExtensions() is enabled, the layout and template type are
  *   switched based on the parsed extension or Accept-Type header.  For example, if `controller/action.xml`
- *   is requested, the view path becomes `app/views/controller/xml/action.ctp`. Also if
+ *   is requested, the view path becomes `app/View/Controller/xml/action.ctp`. Also if
  *   `controller/action` is requested with `Accept-Type: application/xml` in the headers
- *   the view path will become `app/views/controller/xml/action.ctp`.
+ *   the view path will become `app/View/Controller/xml/action.ctp`.
  * - If a helper with the same name as the extension exists, it is added to the controller.
  * - If the extension is of a type that RequestHandler understands, it will set that
  *   Content-type in the response header.

lib/Cake/Controller/Controller.php

@@ -136,7 +136,7 @@ class Controller extends Object {
 
 /**
  * The name of the view file to render. The name specified
- * is the filename in /app/views/<sub_folder> without the .ctp extension.
+ * is the filename in /app/View/<SubFolder> without the .ctp extension.
  *
  * @var string
  * @link http://book.cakephp.org/view/962/Page-related-Attributes-layout-and-pageTitle
@@ -145,7 +145,7 @@ class Controller extends Object {
 
 /**
  * The name of the layout file to render the view inside of. The name specified
- * is the filename of the layout in /app/views/layouts without the .ctp
+ * is the filename of the layout in /app/View/Layouts without the .ctp
  * extension.
  *
  * @var string

lib/Cake/Core/App.php

@@ -36,7 +36,7 @@
  *
  * For instance if you'd like to use your own HttpSocket class, put it under
  *
- *		app/libs/Network/Http/HttpSocket.php
+ *		app/Network/Http/HttpSocket.php
  *
  * ### Inspecting loaded paths
  *

lib/Cake/Core/Configure.php

@@ -53,10 +53,10 @@ class Configure {
  * Bootstrapping includes the following steps:
  *
  * - Setup App array in Configure.
- * - Include app/config/core.php.
+ * - Include app/Config/core.php.
  * - Configure core cache configurations.
  * - Load App cache files.
- * - Include app/config/bootstrap.php.
+ * - Include app/Config/bootstrap.php.
  * - Setup error/exception handlers.
  *
  * @return void

lib/Cake/Core/Object.php

@@ -134,7 +134,7 @@ class Object {
  * for more information on writing to logs.
  *
  * @param string $msg Log message
- * @param integer $type Error type constant. Defined in app/config/core.php.
+ * @param integer $type Error type constant. Defined in app/Config/core.php.
  * @return boolean Success of log write
  */
 	public function log($msg, $type = LOG_ERROR) {

lib/Cake/Error/ErrorHandler.php

@@ -46,7 +46,7 @@ App::uses('AppController', 'Controller');
  * #### Create your own Exception handler with `Exception.handler`
  *
  * This gives you full control over the exception handling process.  The class you choose should be
- * loaded in your app/config/bootstrap.php, so its available to handle any exceptions.  You can
+ * loaded in your app/Config/bootstrap.php, so its available to handle any exceptions.  You can
  * define the handler as any callback type. Using Exception.handler overrides all other exception 
  * handling settings and logic.
  *
@@ -60,7 +60,7 @@ App::uses('AppController', 'Controller');
  *
  * If you don't want to take control of the exception handling, but want to change how exceptions are
  * rendered you can use `Exception.renderer` to choose a class to render exception pages.  By default
- * `ExceptionRenderer` is used.  Your custom exception renderer class should be placed in app/Lib/Error.
+ * `ExceptionRenderer` is used.  Your custom exception renderer class should be placed in app/Error.
  *
  * Your custom renderer should expect an exception in its constructor, and implement a render method.
  * Failing to do so will cause additional errors.

lib/Cake/Log/CakeLog.php

@@ -56,7 +56,7 @@ class CakeLog {
 
 /**
  * Configure and add a new logging stream to CakeLog
- * You can use add loggers from app/libs use app.loggername, or any plugin/libs using plugin.loggername.
+ * You can use add loggers from app/Log/Engine use app.loggername, or any plugin/Log/Engine using plugin.loggername.
  *
  * ### Usage:
  *

lib/Cake/Model/ConnectionManager.php

@@ -2,7 +2,7 @@
 /**
  * Datasource connection manager
  *
- * Provides an interface for loading and enumerating connections defined in app/config/database.php
+ * Provides an interface for loading and enumerating connections defined in app/Config/database.php
  *
  * PHP 5
  *
@@ -75,7 +75,7 @@ class ConnectionManager {
 /**
  * Gets a reference to a DataSource object
  *
- * @param string $name The name of the DataSource, as defined in app/config/database.php
+ * @param string $name The name of the DataSource, as defined in app/Config/database.php
  * @return object Instance
  * @throws MissingDatasourceConfigException
  * @throws MissingDatasourceFileException
@@ -140,9 +140,9 @@ class ConnectionManager {
 /**
  * Loads the DataSource class for the given connection name
  *
- * @param mixed $connName A string name of the connection, as defined in app/config/database.php,
+ * @param mixed $connName A string name of the connection, as defined in app/Config/database.php,
  *                        or an array containing the filename (without extension) and class name of the object,
- *                        to be found in app/models/datasources/ or cake/libs/model/datasources/.
+ *                        to be found in app/Model/Datasource/ or lib/Cake/Model/Datasource/.
  * @return boolean True on success, null on failure or false if the class is already loaded
  * @throws MissingDatasourceFileException
  */

lib/Cake/Model/Model.php

@@ -2849,7 +2849,7 @@ class Model extends Object {
 /**
  * Sets the DataSource to which this model is bound.
  *
- * @param string $dataSource The name of the DataSource, as defined in app/config/database.php
+ * @param string $dataSource The name of the DataSource, as defined in app/Config/database.php
  * @return boolean True on success
  */
 	public function setDataSource($dataSource = null) {

lib/Cake/Routing/Dispatcher.php

@@ -166,7 +166,7 @@ class Dispatcher {
 
 /**
  * Applies Routing and additionalParameters to the request to be dispatched.
- * If Routes have not been loaded they will be loaded, and app/config/routes.php will be run.
+ * If Routes have not been loaded they will be loaded, and app/Config/routes.php will be run.
  *
  * @param CakeRequest $request CakeRequest object to mine for parameter information.
  * @param array $additionalParams An array of additional parameters to set to the request.

lib/Cake/Test/Case/Model/Datasource/CakeSessionTest.php

@@ -521,7 +521,7 @@ class CakeSessionTest extends CakeTestCase {
 	}
 
 /**
- * test using a handler from app/libs.
+ * test using a handler from app/Model/Datasource/Session.
  *
  * @return void
  */

lib/Cake/Test/test_app/Model/Datasource/Session/TestAppLibSession.php

@@ -1,6 +1,6 @@
 <?php
 /**
- * Test suite app/libs session handler
+ * Test suite app/Model/Datasource/Session session handler
  *
  */
 class TestAppLibSession implements CakeSessionHandlerInterface {

lib/Cake/Test/test_app/View/Posts/test_nocache_tags.ctp

@@ -97,8 +97,8 @@ if (!empty($filePresent)):
 <a href="https://trac.cakephp.org/wiki/notes/1.2.x.x"><?php echo __d('cake', 'Read the release notes and get the latest version'); ?> </a>
 <h2><?php echo __d('cake', 'Editing this Page'); ?></h2>
 <p>
-<?php echo __d('cake', 'To change the content of this page, create: /app/views/pages/home.ctp.'); ?><br />
+<?php echo __d('cake', 'To change the content of this page, create: /app/View/Pages/home.ctp.'); ?><br />
-<?php echo __d('cake', 'To change its layout, create: /app/views/layouts/default.ctp.'); ?><br />
+<?php echo __d('cake', 'To change its layout, create: /app/View/Layouts/default.ctp.'); ?><br />
 <a href="http://manual.cakephp.org/"><?php echo __d('cake', 'See the views section of the manual for more info.'); ?> </a><br />
 <?php echo __d('cake', 'You can also add some CSS styles for your pages at: app/webroot/css/.'); ?>
 </p>

lib/Cake/Utility/Debugger.php

@@ -644,11 +644,11 @@ class Debugger {
  */
 	public static function checkSecurityKeys() {
 		if (Configure::read('Security.salt') == 'DYhG93b0qyJfIxfs2guVoUubWwvniR2G0FgaC9mi') {
-			trigger_error(__d('cake_dev', 'Please change the value of \'Security.salt\' in app/config/core.php to a salt value specific to your application'), E_USER_NOTICE);
+			trigger_error(__d('cake_dev', 'Please change the value of \'Security.salt\' in app/Config/core.php to a salt value specific to your application'), E_USER_NOTICE);
 		}
 
 		if (Configure::read('Security.cipherSeed') === '76859309657453542496749683645') {
-			trigger_error(__d('cake_dev', 'Please change the value of \'Security.cipherSeed\' in app/config/core.php to a numeric (digits only) seed value specific to your application'), E_USER_NOTICE);
+			trigger_error(__d('cake_dev', 'Please change the value of \'Security.cipherSeed\' in app/Config/core.php to a numeric (digits only) seed value specific to your application'), E_USER_NOTICE);
 		}
 	}
 

lib/Cake/View/ThemeView.php

@@ -26,7 +26,7 @@ App::uses('View', 'View');
  * the default app view files will be used. You can set `$this->theme` and `$this->viewClass = 'Theme'`
  * in your Controller to use the ThemeView.
  *
- * Example of theme path with `$this->theme = 'super_hot';` Would be `app/views/themed/super_hot/posts`
+ * Example of theme path with `$this->theme = 'super_hot';` Would be `app/View/Themed/SuperHot/Posts`
  *
  * @package       cake.libs.view
  */

lib/Cake/View/View.php

@@ -289,7 +289,7 @@ class View extends Object {
  * This realizes the concept of Elements, (or "partial layouts") and the $params array is used to send
  * data to be used in the element. Elements can be cached improving performance by using the `cache` option.
  *
- * @param string $name Name of template file in the/app/views/elements/ folder
+ * @param string $name Name of template file in the/app/View/Elements/ folder
  * @param array $data Array of data to be made available to the rendered view (i.e. the Element)
  * @param array $options Array of options. Possible keys are:
  * - `cache` - Can either be `true`, to enable caching using the config in View::$elementCache. Or an array