misp-galaxy/tools/csv_to_galaxy.py
2017-01-30 14:53:08 +01:00

87 lines
3 KiB
Python

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import csv
import argparse
import uuid
import json
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='CSV to Galaxy')
parser.add_argument("-c", "--csv", required=True, help="input csv")
parser.add_argument("-v", "--value", type=int, required=True, help="number of the column with the value")
parser.add_argument("-e", "--value_description", type=int, nargs='+', help="number of the column with description, if not defined, all other data wil be concataned")
parser.add_argument("-w", "--version", type=int, help="version of the galaxy")
parser.add_argument("-d", "--description", help="description of the galaxy")
parser.add_argument("-a", "--authors", nargs='+', help="author of the galaxy")
parser.add_argument("-s", "--source", help="source of the galaxy")
parser.add_argument("-t", "--type", help="type of galaxy, also the name of the generated json")
parser.add_argument("-n", "--name", help="name of the galaxy")
parser.add_argument("-u", "--title", action='store_true', help="set it if the first line contains the name of the columns")
args = parser.parse_args()
values = []
if args.title is None:
args.title = False
with open(args.csv, newline='') as csvfile:
csvreader = csv.reader(csvfile, delimiter=',', quotechar='"')
for data in csvreader:
if args.title:
args.title = False
continue
temp = {}
temp["value"] = data[args.value]
temp["description"] = ""
if args.value_description is not None:
for i in args.value_description:
if data[i] != "":
temp["description"] = temp["description"] + data[i].replace('\n', ' ') + "; "
else:
for i in range(len(data)):
if i != args.value and data[i] != "":
temp["description"] = temp["description"] + data[i] + "; "
values.append(temp)
galaxy = {}
galaxy["values"] = values
if args.version is not None:
galaxy["version"] = args.version
else:
galaxy["version"] = 1
galaxy["uuid"] = str(uuid.uuid4())
if args.description is not None:
galaxy["description"] = args.description
else:
galaxy["description"] = "automagically generated galaxy"
if args.authors is not None:
galaxy["authors"] = []
for author in args.authors:
galaxy["authors"].append(author)
else:
galaxy["authors"] = ["authorname"]
if args.source is not None:
galaxy["source"] = args.source
else:
galaxy["source"] = "source"
if args.type is not None:
galaxy["type"] = args.type
else:
galaxy["type"] = "type"
if args.name is not None:
galaxy["name"] = args.name
else:
galaxy["name"] = "name"
print (galaxy)
with open(args.type+'.json', 'w') as outfile:
json.dump(galaxy, outfile)