From 91827dbe83c37be798bc7ef9ac0abcaefea55501 Mon Sep 17 00:00:00 2001 From: Christophe Vandeplas Date: Fri, 29 Mar 2024 14:43:41 +0100 Subject: [PATCH 1/4] new: [tool] Generator for UK Health Security Agency Culture Collections --- tools/gen_ukhsa_culture_collections.py | 133 +++++++++++++++++++++++++ 1 file changed, 133 insertions(+) create mode 100644 tools/gen_ukhsa_culture_collections.py diff --git a/tools/gen_ukhsa_culture_collections.py b/tools/gen_ukhsa_culture_collections.py new file mode 100644 index 0000000..40245d2 --- /dev/null +++ b/tools/gen_ukhsa_culture_collections.py @@ -0,0 +1,133 @@ +#!/usr/bin/env python3 +# -*- coding: utf-8 -*- +# +# A simple convertor of the UK Health Security Agency Culture Collections +# to a MISP Galaxy datastructure. +# Copyright (C) 2024 MISP Project +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . + + +import os +import json +import requests +import uuid + +''' +From https://www.culturecollections.org.uk/search/?searchScope=Product&pageNumber=1&filter.collectionGroup=0&filter.collection=0&filter.sorting=DateCreated +JSON is loaded, needs to be paginated + +Culturecollections.org.uk is published under the Open Government Licence, allowing the reproduction of information as +long as the license terms are obeyed. Material on this website is subject to Crown copyright protection unless otherwise +indicated. Users should be aware that information provided to third parties through feeds may be edited or cached, and +we do not guarantee the accuracy of such third-party products. +https://www.culturecollections.org.uk/training-and-support/policies/terms-and-conditions-of-use/ + +The Culture Collections represent deposits of cultures from world-wide sources. While every effort is made to ensure +details distributed by Culture Collections are accurate, Culture Collections cannot be held responsible for any +inaccuracies in the data supplied. References where quoted are mainly attributed to the establishment of the cell +culture and not for any specific property of the cell line, therefore further references should be obtained regarding +cell culture characteristics. Passage numbers where given act only as a guide and Culture Collections does not guarantee +the passage number stated will be the passage number received by the customer. +''' + +def download_items(): + data = {'items': [], + 'collections': {}, + 'collection_groups': {}} + page_number = 1 + page_number_max = None + while True: + url = 'https://www.culturecollections.org.uk/umbraco/api/searchApi/getSearchResults?searchParams={"searchText":"","searchScope":"Product","pageNumber":' + str(page_number) + ',"filter":{"collectionGroup":"0","collection":"0","facets":{},"sorting":"DateCreated"}}' + page_resp = requests.get(url) + page_resp.encoding = 'utf-8-sig' + page_data = page_resp.json() + page_number_max = page_data['pagination']['totalPages'] + + for c in page_data['filter']['collections']['aggregationItems']: + data['collections'][int(c['value'])] = c['title'] + for cg in page_data['filter']['collectionGroups']['aggregationItems']: + data['collection_groups'][int(cg['value'])] = cg['title'] + for item in page_data['items']: + item['collection'] = data['collections'][item['collectionId']] + data['items'].extend(page_data['items']) + print(f"Fetching page {page_number}/{page_number_max}: ", end="") + print(f"items size is now {len(data['items'])} as I extended with {len(page_data['items'])} items.") + if page_number >= page_number_max: + break + page_number += 1 + return data + + +def save_items(d): + with open('items.json', 'w') as f: + json.dump(d, f, indent=2, sort_keys=True) + return True + +def load_saved_items(): + with open('items.json', 'r') as f: + d = json.load(f) + return d + +data = download_items() +save_items(data) +# data = load_saved_items() + +clusters = [] +collections = set() +for item in data['items']: + cluster = { + 'value': f"{item['name']}", + 'uuid': str(uuid.uuid5(uuid.UUID("bbe11c06-1d6a-477e-88f1-cdda2d71de56"), item['catalogueNumber'])), + 'meta': { + 'refs': [item['url']], + 'external_id': item['catalogueNumber'] + } + } + for p in item['properties']: + if p['value']: + p_name = p['name'].lower().replace(' ', '_') + if p['name'] not in cluster['meta']: + cluster['meta'][p_name] = [] + cluster['meta'][p_name].append(p['value']) + + clusters.append(cluster) + + + +json_galaxy = { + 'icon': "virus", + 'name': "UKHSA Culture Collections", + 'description': "UK Health Security Agency Culture Collections represent deposits of cultures that consist of expertly preserved, authenticated cell lines and microbial strains of known provenance.", + 'namespace': "gov.uk", + 'type': "ukhsa-culture-collections", + 'uuid': "bbe11c06-1d6a-477e-88f1-cdda2d71de56", + 'version': 1 +} + +with open(os.path.join('', 'clusters', 'ukhsa-culture-collections.json'), 'r') as f: # FIXME add .. to path + json_cluster = json.load(f) +json_cluster['values'] = clusters +json_cluster['version'] += 1 + +# save the Galaxy and Cluster file +with open(os.path.join('', 'galaxies', 'ukhsa-culture-collections.json'), 'w') as f: # FIXME add .. to path + json.dump(json_galaxy, f, indent=2, sort_keys=True, ensure_ascii=False) + f.write('\n') # only needed for the beauty and to be compliant with jq_all_the_things + +with open(os.path.join('', 'clusters', 'ukhsa-culture-collections.json'), 'w') as f: # FIXME add .. to path + json.dump(json_cluster, f, indent=2, sort_keys=True, ensure_ascii=False) + f.write('\n') # only needed for the beauty and to be compliant with jq_all_the_things + +print("All done, please don't forget to ./jq_all_the_things.sh, commit, and then ./validate_all.sh.") \ No newline at end of file From 1c0beeaecfd2f7195e1b590fa317475302a1f2d1 Mon Sep 17 00:00:00 2001 From: Christophe Vandeplas Date: Fri, 29 Mar 2024 14:45:13 +0100 Subject: [PATCH 2/4] new: [UKHSA] Added UK Health Security Agency Culture Collections --- clusters/ukhsa-culture-collections.json | 294459 +++++++++++++++++++++ 1 file changed, 294459 insertions(+) create mode 100644 clusters/ukhsa-culture-collections.json diff --git a/clusters/ukhsa-culture-collections.json b/clusters/ukhsa-culture-collections.json new file mode 100644 index 0000000..4e3c0e3 --- /dev/null +++ b/clusters/ukhsa-culture-collections.json @@ -0,0 +1,294459 @@ +{ + "authors": [ + "UK Health Security Agency" + ], + "category": "virus", + "description": "UK Health Security Agency Culture Collections represent deposits of cultures that consist of expertly preserved, authenticated cell lines and microbial strains of known provenance.", + "name": "UKHSA Culture Collections", + "source": "https://www.culturecollections.org.uk", + "type": "ukhsa-culture-collections", + "uuid": "7548f6ec-77dc-4f23-809b-2017ebd57637", + "values": [ + { + "meta": { + "catalogue_number": [ + "NCTC 9843" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 9843", + "product_name": [ + "Rahnella inusitata" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/rahnella-inusitata" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "6ebe798a-c0a4-574a-84d6-0cf0c306a960", + "value": "Rahnella inusitata" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 9842" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 9842", + "product_name": [ + "Rahnella inusitata" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/rahnella-inusitata-2" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "29a1618a-f446-50b3-b538-eedcdf9f6174", + "value": "Rahnella inusitata" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 13769" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 13769", + "other_collection_numbers": [ + "CCUG:52867, CIP:106945, DSM:13030, Y11, WDCM 00216" + ], + "product_name": [ + "Yersinia enterocolitica subsp. palearctica" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/yersinia-enterocolitica-subsp-palearctica" + ], + "type_strain": [ + "Type Strain" + ] + }, + "uuid": "711a3a1d-f04c-53a1-af52-af89300eaf2b", + "value": "Yersinia enterocolitica subsp. palearctica" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 14160" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 14160", + "other_collection_numbers": [ + "E55617" + ], + "product_name": [ + "Vibrio cholerae" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/vibrio-cholerae-50" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "134d9b0d-afc9-52f1-9181-bf0dd2b0085e", + "value": "Vibrio cholerae" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 14156" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 14156", + "other_collection_numbers": [ + "M113" + ], + "product_name": [ + "Shigella flexneri" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/shigella-flexneri-59" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "53163f31-af10-5337-bd50-3dc405f730d2", + "value": "Shigella flexneri" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 14155" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 14155", + "other_collection_numbers": [ + "M64" + ], + "product_name": [ + "Shigella flexneri" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/shigella-flexneri-58" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "cc7ae399-a536-5ef9-8059-c04d9c521506", + "value": "Shigella flexneri" + }, + { + "meta": { + "catalogue_number": [ + "NCTC 14127" + ], + "collection": [ + "NCTC" + ], + "external_id": "NCTC 14127", + "other_collection_numbers": [ + "M165" + ], + "product_name": [ + "Shigella dysenteriae" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/shigella-dysenteriae-44" + ], + "type_strain": [ + "Reference Strain" + ] + }, + "uuid": "9d99433e-7456-5f6e-ba98-be1e08abf99c", + "value": "Shigella dysenteriae" + }, + { + "meta": { + "catalogue_number": [ + "21102105" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "Carcinoma/Neoplasms" + ], + "external_id": "21102105", + "product_name": [ + "MCC6" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/mcc6" + ], + "species": [ + "Human" + ], + "tissue_of_origin": [ + "Lymph node" + ] + }, + "uuid": "ee3b692a-78ec-5355-a236-c91ab6b27d61", + "value": "MCC6" + }, + { + "meta": { + "catalogue_number": [ + "13051501" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "None Stated" + ], + "external_id": "13051501", + "product_name": [ + "TK6 (IVGT)" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/tk6-ivgt" + ], + "species": [ + "Human" + ], + "tissue_of_origin": [ + "Spleen" + ] + }, + "uuid": "0bdf7d64-2638-5ddd-82f6-de152c70ec28", + "value": "TK6 (IVGT)" + }, + { + "meta": { + "catalogue_number": [ + "12070506" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "None Stated" + ], + "external_id": "12070506", + "product_name": [ + "AB-1 HA" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/ab-1-ha" + ], + "species": [ + "Mouse" + ], + "tissue_of_origin": [ + "Lung" + ] + }, + "uuid": "33917698-4898-5ef5-bf8b-66fa7110c83b", + "value": "AB-1 HA" + }, + { + "meta": { + "catalogue_number": [ + "21102106" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "Carcinoma" + ], + "external_id": "21102106", + "product_name": [ + "LIM2537" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/lim2537" + ], + "species": [ + "Human" + ], + "tissue_of_origin": [ + "Colon" + ] + }, + "uuid": "f9d7e9cc-bcf7-5349-a4c8-ae9020ce87ad", + "value": "LIM2537" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 8835" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 8835", + "product_name": [ + "Pichia fermentans" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/pichia-fermentans" + ], + "source": [ + "Not Stated" + ] + }, + "uuid": "b6de56f9-a3fe-54da-8cab-ed68094475ca", + "value": "Pichia fermentans" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 8722" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 8722", + "product_name": [ + "Candida parapsilosis" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/candida-parapsilosis-37" + ], + "source": [ + "Not Stated" + ] + }, + "uuid": "4458c64e-c5f0-5ba1-b070-6ca6226f6455", + "value": "Candida parapsilosis" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7469" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7469", + "product_name": [ + "Mucor circinelloides" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/mucor-circinelloides-5" + ], + "source": [ + "Not Stated" + ] + }, + "uuid": "5576aaf9-2725-5fd8-bcf2-3b3163c8888c", + "value": "Mucor circinelloides" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7157" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7157", + "product_name": [ + "Didymella glomerata" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/didymella-glomerata" + ], + "source": [ + "Not Stated" + ] + }, + "uuid": "09b50eb5-77be-56b5-935f-2fff77789747", + "value": "Didymella glomerata" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7115" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7115", + "product_name": [ + "Acrophialophora fusispora" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/acrophialophora-fusispora-2" + ], + "site_of_origin": [ + "Lung" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "02905f32-91d7-5dec-904a-2194328eadd6", + "value": "Acrophialophora fusispora" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 2171" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 2171", + "product_name": [ + "Fusarium petroliphilum" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/fusarium-petroliphilum-2" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "2635571e-3a55-5c8b-87b8-46ab87ce1f9f", + "value": "Fusarium petroliphilum" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7483" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7483", + "product_name": [ + "Fusarium petroliphilum" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/fusarium-petroliphilum" + ], + "site_of_origin": [ + "Blood culture" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "44c9ed86-c513-5bf6-9558-0fda224d7f9c", + "value": "Fusarium petroliphilum" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7435" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7435", + "product_name": [ + "Fusarium fujikuroi complex" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/fusarium-fujikuroi-complex" + ], + "site_of_origin": [ + "Blood culture" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "96fa3874-94cb-50de-b1d8-33a2d061154d", + "value": "Fusarium fujikuroi complex" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 8834" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 8834", + "product_name": [ + "Kluyveromyces marxianus" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/kluyveromyces-marxianus-24" + ], + "source": [ + "Not Stated" + ] + }, + "uuid": "854ca2df-7c08-53c7-a5f9-bb58f9919007", + "value": "Kluyveromyces marxianus" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 7162" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 7162", + "product_name": [ + "Aspergillus japonicus" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/aspergillus-japonicus" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "805ee369-a3f0-5e88-a9a3-c133ee2ec99e", + "value": "Aspergillus japonicus" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 2845" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 2845", + "product_name": [ + "Lichtheimia ramosa" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/lichtheimia-ramosa" + ], + "site_of_origin": [ + "Rhinocerebral tissue" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "6f405bca-be31-5dc4-8bbf-fd97d653f8a3", + "value": "Lichtheimia ramosa" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 8444" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 8444", + "product_name": [ + "Wickerhamomyces anomalus" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/wickerhamomyces-anomalus-15" + ], + "site_of_origin": [ + "Blood" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "eafa6ae5-d34f-5780-afff-20ca9e338b92", + "value": "Wickerhamomyces anomalus" + }, + { + "meta": { + "catalogue_number": [ + "NCPF 8438" + ], + "collection": [ + "NCPF" + ], + "external_id": "NCPF 8438", + "product_name": [ + "Meyerozyma guilliermondii" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/meyerozyma-guilliermondii-19" + ], + "site_of_origin": [ + "Blood" + ], + "source": [ + "Human origin" + ] + }, + "uuid": "023ed5f5-21fb-5125-997c-cfd65a411801", + "value": "Meyerozyma guilliermondii" + }, + { + "meta": { + "catalogue_number": [ + "95051033" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "Non-Hodgkin Lymphoma" + ], + "external_id": "95051033", + "product_name": [ + "My-La CD8+" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/my-la-cd8" + ], + "species": [ + "Human" + ], + "tissue_of_origin": [ + "Lymph node" + ] + }, + "uuid": "8c58e60d-4629-543a-86c2-0f88c58baa37", + "value": "My-La CD8+" + }, + { + "meta": { + "catalogue_number": [ + "88010601" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "None Stated" + ], + "external_id": "88010601", + "product_name": [ + "Grunt Fin (GF)" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/grunt-fin-gf" + ], + "species": [ + "Grunt" + ], + "tissue_of_origin": [ + "Other" + ] + }, + "uuid": "e13fdefc-3e98-5275-b071-97692d85aece", + "value": "Grunt Fin (GF)" + }, + { + "meta": { + "catalogue_number": [ + "1806156v" + ], + "collection": [ + "NCPV" + ], + "external_id": "1806156v", + "hazard_group_(acdp)": [ + "ACDP HG2" + ], + "product_name": [ + "Herpes simplex virus 1" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/herpes-simplex-virus-1-9" + ], + "strain_designation": [ + "P18" + ] + }, + "uuid": "2f56db3c-e3f4-5a2e-9988-364669eec8f5", + "value": "Herpes simplex virus 1" + }, + { + "meta": { + "catalogue_number": [ + "95051032" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "None Stated" + ], + "external_id": "95051032", + "product_name": [ + "My-La CD4+" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/my-la-cd4" + ], + "species": [ + "Human" + ], + "tissue_of_origin": [ + "Lymph node" + ] + }, + "uuid": "850a70e7-953b-55e6-8eaf-b0262ab70eb0", + "value": "My-La CD4+" + }, + { + "meta": { + "catalogue_number": [ + "RMNOROG2" + ], + "collection": [ + "LENTICULE® Discs" + ], + "external_id": "RMNOROG2", + "genome_copies_per_lenticule®_disc_range": [ + "

1.5x103 – 2.9x103

" + ], + "product_name": [ + "Norovirus GII" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/norovirus-gii-15" + ] + }, + "uuid": "c0f3c716-be3c-54ac-9f7c-b988feff2d09", + "value": "Norovirus GII" + }, + { + "meta": { + "catalogue_number": [ + "RMNOROG1" + ], + "collection": [ + "LENTICULE® Discs" + ], + "external_id": "RMNOROG1", + "genome_copies_per_lenticule®_disc_range": [ + "

2.2x104 – 3.3x104

" + ], + "product_name": [ + "Norovirus GI" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/norovirus-gi-19" + ] + }, + "uuid": "c9fd4aea-0832-5881-ae3d-e08552d533f5", + "value": "Norovirus GI" + }, + { + "meta": { + "catalogue_number": [ + "RM000HAV" + ], + "collection": [ + "LENTICULE® Discs" + ], + "external_id": "RM000HAV", + "genome_copies_per_lenticule®_disc_range": [ + "

2.5x104 – 3.7x104

" + ], + "product_name": [ + "Hepatitis A virus (HAV)" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/hepatitis-a-virus-hav-16" + ] + }, + "uuid": "890ab13a-0ef1-55d0-b57e-1fdf39a77eaf", + "value": "Hepatitis A virus (HAV)" + }, + { + "meta": { + "catalogue_number": [ + "21102109" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "Mesothelioma" + ], + "external_id": "21102109", + "product_name": [ + "AC29" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/ac29-3" + ], + "species": [ + "Mouse" + ], + "tissue_of_origin": [ + "Other" + ] + }, + "uuid": "77371982-6bd6-5b0b-8b39-aa5464688c35", + "value": "AC29" + }, + { + "meta": { + "catalogue_number": [ + "21102108" + ], + "collection": [ + "General Cell" + ], + "disease": [ + "Carcinoma" + ], + "external_id": "21102108", + "product_name": [ + "HeLa H2B-2FP" + ], + "refs": [ + "https://www.culturecollections.org.uk/nop/product/hela-h2b-2fp" + ], + "species": [ + "Human" + ], + 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galaxies/ukhsa-culture-collections.json | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 galaxies/ukhsa-culture-collections.json diff --git a/galaxies/ukhsa-culture-collections.json b/galaxies/ukhsa-culture-collections.json new file mode 100644 index 0000000..2cebf1a --- /dev/null +++ b/galaxies/ukhsa-culture-collections.json @@ -0,0 +1,9 @@ +{ + "description": "UK Health Security Agency Culture Collections represent deposits of cultures that consist of expertly preserved, authenticated cell lines and microbial strains of known provenance.", + "icon": "virus", + "name": "UKHSA Culture Collections", + "namespace": "gov.uk", + "type": "ukhsa-culture-collections", + "uuid": "bbe11c06-1d6a-477e-88f1-cdda2d71de56", + "version": 1 +} From 7d5044ccaf6875ac155457de7efbf2242e39a77a Mon Sep 17 00:00:00 2001 From: Christophe Vandeplas Date: Fri, 29 Mar 2024 19:31:14 +0100 Subject: [PATCH 4/4] fix: [ukhsa] fix duplicate entry --- clusters/ukhsa-culture-collections.json | 22 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