Linux commit

galaxy/bin/Activate.ps1

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+<#
+.Synopsis
+Activate a Python virtual environment for the current PowerShell session.
+
+.Description
+Pushes the python executable for a virtual environment to the front of the
+$Env:PATH environment variable and sets the prompt to signify that you are
+in a Python virtual environment. Makes use of the command line switches as
+well as the `pyvenv.cfg` file values present in the virtual environment.
+
+.Parameter VenvDir
+Path to the directory that contains the virtual environment to activate. The
+default value for this is the parent of the directory that the Activate.ps1
+script is located within.
+
+.Parameter Prompt
+The prompt prefix to display when this virtual environment is activated. By
+default, this prompt is the name of the virtual environment folder (VenvDir)
+surrounded by parentheses and followed by a single space (ie. '(.venv) ').
+
+.Example
+Activate.ps1
+Activates the Python virtual environment that contains the Activate.ps1 script.
+
+.Example
+Activate.ps1 -Verbose
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and shows extra information about the activation as it executes.
+
+.Example
+Activate.ps1 -VenvDir C:\Users\MyUser\Common\.venv
+Activates the Python virtual environment located in the specified location.
+
+.Example
+Activate.ps1 -Prompt "MyPython"
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and prefixes the current prompt with the specified string (surrounded in
+parentheses) while the virtual environment is active.
+
+.Notes
+On Windows, it may be required to enable this Activate.ps1 script by setting the
+execution policy for the user. You can do this by issuing the following PowerShell
+command:
+
+PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
+
+For more information on Execution Policies: 
+https://go.microsoft.com/fwlink/?LinkID=135170
+
+#>
+Param(
+    [Parameter(Mandatory = $false)]
+    [String]
+    $VenvDir,
+    [Parameter(Mandatory = $false)]
+    [String]
+    $Prompt
+)
+
+<# Function declarations --------------------------------------------------- #>
+
+<#
+.Synopsis
+Remove all shell session elements added by the Activate script, including the
+addition of the virtual environment's Python executable from the beginning of
+the PATH variable.
+
+.Parameter NonDestructive
+If present, do not remove this function from the global namespace for the
+session.
+
+#>
+function global:deactivate ([switch]$NonDestructive) {
+    # Revert to original values
+
+    # The prior prompt:
+    if (Test-Path -Path Function:_OLD_VIRTUAL_PROMPT) {
+        Copy-Item -Path Function:_OLD_VIRTUAL_PROMPT -Destination Function:prompt
+        Remove-Item -Path Function:_OLD_VIRTUAL_PROMPT
+    }
+
+    # The prior PYTHONHOME:
+    if (Test-Path -Path Env:_OLD_VIRTUAL_PYTHONHOME) {
+        Copy-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME -Destination Env:PYTHONHOME
+        Remove-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME
+    }
+
+    # The prior PATH:
+    if (Test-Path -Path Env:_OLD_VIRTUAL_PATH) {
+        Copy-Item -Path Env:_OLD_VIRTUAL_PATH -Destination Env:PATH
+        Remove-Item -Path Env:_OLD_VIRTUAL_PATH
+    }
+
+    # Just remove the VIRTUAL_ENV altogether:
+    if (Test-Path -Path Env:VIRTUAL_ENV) {
+        Remove-Item -Path env:VIRTUAL_ENV
+    }
+
+    # Just remove VIRTUAL_ENV_PROMPT altogether.
+    if (Test-Path -Path Env:VIRTUAL_ENV_PROMPT) {
+        Remove-Item -Path env:VIRTUAL_ENV_PROMPT
+    }
+
+    # Just remove the _PYTHON_VENV_PROMPT_PREFIX altogether:
+    if (Get-Variable -Name "_PYTHON_VENV_PROMPT_PREFIX" -ErrorAction SilentlyContinue) {
+        Remove-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Scope Global -Force
+    }
+
+    # Leave deactivate function in the global namespace if requested:
+    if (-not $NonDestructive) {
+        Remove-Item -Path function:deactivate
+    }
+}
+
+<#
+.Description
+Get-PyVenvConfig parses the values from the pyvenv.cfg file located in the
+given folder, and returns them in a map.
+
+For each line in the pyvenv.cfg file, if that line can be parsed into exactly
+two strings separated by `=` (with any amount of whitespace surrounding the =)
+then it is considered a `key = value` line. The left hand string is the key,
+the right hand is the value.
+
+If the value starts with a `'` or a `"` then the first and last character is
+stripped from the value before being captured.
+
+.Parameter ConfigDir
+Path to the directory that contains the `pyvenv.cfg` file.
+#>
+function Get-PyVenvConfig(
+    [String]
+    $ConfigDir
+) {
+    Write-Verbose "Given ConfigDir=$ConfigDir, obtain values in pyvenv.cfg"
+
+    # Ensure the file exists, and issue a warning if it doesn't (but still allow the function to continue).
+    $pyvenvConfigPath = Join-Path -Resolve -Path $ConfigDir -ChildPath 'pyvenv.cfg' -ErrorAction Continue
+
+    # An empty map will be returned if no config file is found.
+    $pyvenvConfig = @{ }
+
+    if ($pyvenvConfigPath) {
+
+        Write-Verbose "File exists, parse `key = value` lines"
+        $pyvenvConfigContent = Get-Content -Path $pyvenvConfigPath
+
+        $pyvenvConfigContent | ForEach-Object {
+            $keyval = $PSItem -split "\s*=\s*", 2
+            if ($keyval[0] -and $keyval[1]) {
+                $val = $keyval[1]
+
+                # Remove extraneous quotations around a string value.
+                if ("'""".Contains($val.Substring(0, 1))) {
+                    $val = $val.Substring(1, $val.Length - 2)
+                }
+
+                $pyvenvConfig[$keyval[0]] = $val
+                Write-Verbose "Adding Key: '$($keyval[0])'='$val'"
+            }
+        }
+    }
+    return $pyvenvConfig
+}
+
+
+<# Begin Activate script --------------------------------------------------- #>
+
+# Determine the containing directory of this script
+$VenvExecPath = Split-Path -Parent $MyInvocation.MyCommand.Definition
+$VenvExecDir = Get-Item -Path $VenvExecPath
+
+Write-Verbose "Activation script is located in path: '$VenvExecPath'"
+Write-Verbose "VenvExecDir Fullname: '$($VenvExecDir.FullName)"
+Write-Verbose "VenvExecDir Name: '$($VenvExecDir.Name)"
+
+# Set values required in priority: CmdLine, ConfigFile, Default
+# First, get the location of the virtual environment, it might not be
+# VenvExecDir if specified on the command line.
+if ($VenvDir) {
+    Write-Verbose "VenvDir given as parameter, using '$VenvDir' to determine values"
+}
+else {
+    Write-Verbose "VenvDir not given as a parameter, using parent directory name as VenvDir."
+    $VenvDir = $VenvExecDir.Parent.FullName.TrimEnd("\\/")
+    Write-Verbose "VenvDir=$VenvDir"
+}
+
+# Next, read the `pyvenv.cfg` file to determine any required value such
+# as `prompt`.
+$pyvenvCfg = Get-PyVenvConfig -ConfigDir $VenvDir
+
+# Next, set the prompt from the command line, or the config file, or
+# just use the name of the virtual environment folder.
+if ($Prompt) {
+    Write-Verbose "Prompt specified as argument, using '$Prompt'"
+}
+else {
+    Write-Verbose "Prompt not specified as argument to script, checking pyvenv.cfg value"
+    if ($pyvenvCfg -and $pyvenvCfg['prompt']) {
+        Write-Verbose "  Setting based on value in pyvenv.cfg='$($pyvenvCfg['prompt'])'"
+        $Prompt = $pyvenvCfg['prompt'];
+    }
+    else {
+        Write-Verbose "  Setting prompt based on parent's directory's name. (Is the directory name passed to venv module when creating the virtual environment)"
+        Write-Verbose "  Got leaf-name of $VenvDir='$(Split-Path -Path $venvDir -Leaf)'"
+        $Prompt = Split-Path -Path $venvDir -Leaf
+    }
+}
+
+Write-Verbose "Prompt = '$Prompt'"
+Write-Verbose "VenvDir='$VenvDir'"
+
+# Deactivate any currently active virtual environment, but leave the
+# deactivate function in place.
+deactivate -nondestructive
+
+# Now set the environment variable VIRTUAL_ENV, used by many tools to determine
+# that there is an activated venv.
+$env:VIRTUAL_ENV = $VenvDir
+
+if (-not $Env:VIRTUAL_ENV_DISABLE_PROMPT) {
+
+    Write-Verbose "Setting prompt to '$Prompt'"
+
+    # Set the prompt to include the env name
+    # Make sure _OLD_VIRTUAL_PROMPT is global
+    function global:_OLD_VIRTUAL_PROMPT { "" }
+    Copy-Item -Path function:prompt -Destination function:_OLD_VIRTUAL_PROMPT
+    New-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Description "Python virtual environment prompt prefix" -Scope Global -Option ReadOnly -Visibility Public -Value $Prompt
+
+    function global:prompt {
+        Write-Host -NoNewline -ForegroundColor Green "($_PYTHON_VENV_PROMPT_PREFIX) "
+        _OLD_VIRTUAL_PROMPT
+    }
+    $env:VIRTUAL_ENV_PROMPT = $Prompt
+}
+
+# Clear PYTHONHOME
+if (Test-Path -Path Env:PYTHONHOME) {
+    Copy-Item -Path Env:PYTHONHOME -Destination Env:_OLD_VIRTUAL_PYTHONHOME
+    Remove-Item -Path Env:PYTHONHOME
+}
+
+# Add the venv to the PATH
+Copy-Item -Path Env:PATH -Destination Env:_OLD_VIRTUAL_PATH
+$Env:PATH = "$VenvExecDir$([System.IO.Path]::PathSeparator)$Env:PATH"

galaxy/bin/activate

@@ -0,0 +1,70 @@
+# This file must be used with "source bin/activate" *from bash*
+# You cannot run it directly
+
+deactivate () {
+    # reset old environment variables
+    if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then
+        PATH="${_OLD_VIRTUAL_PATH:-}"
+        export PATH
+        unset _OLD_VIRTUAL_PATH
+    fi
+    if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then
+        PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}"
+        export PYTHONHOME
+        unset _OLD_VIRTUAL_PYTHONHOME
+    fi
+
+    # Call hash to forget past commands. Without forgetting
+    # past commands the $PATH changes we made may not be respected
+    hash -r 2> /dev/null
+
+    if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then
+        PS1="${_OLD_VIRTUAL_PS1:-}"
+        export PS1
+        unset _OLD_VIRTUAL_PS1
+    fi
+
+    unset VIRTUAL_ENV
+    unset VIRTUAL_ENV_PROMPT
+    if [ ! "${1:-}" = "nondestructive" ] ; then
+    # Self destruct!
+        unset -f deactivate
+    fi
+}
+
+# unset irrelevant variables
+deactivate nondestructive
+
+# on Windows, a path can contain colons and backslashes and has to be converted:
+if [ "${OSTYPE:-}" = "cygwin" ] || [ "${OSTYPE:-}" = "msys" ] ; then
+    # transform D:\path\to\venv to /d/path/to/venv on MSYS
+    # and to /cygdrive/d/path/to/venv on Cygwin
+    export VIRTUAL_ENV=$(cygpath "/home/th3r3d/Documents/Git/misp-galaxy/galaxy")
+else
+    # use the path as-is
+    export VIRTUAL_ENV="/home/th3r3d/Documents/Git/misp-galaxy/galaxy"
+fi
+
+_OLD_VIRTUAL_PATH="$PATH"
+PATH="$VIRTUAL_ENV/bin:$PATH"
+export PATH
+
+# unset PYTHONHOME if set
+# this will fail if PYTHONHOME is set to the empty string (which is bad anyway)
+# could use `if (set -u; : $PYTHONHOME) ;` in bash
+if [ -n "${PYTHONHOME:-}" ] ; then
+    _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}"
+    unset PYTHONHOME
+fi
+
+if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then
+    _OLD_VIRTUAL_PS1="${PS1:-}"
+    PS1="(galaxy) ${PS1:-}"
+    export PS1
+    VIRTUAL_ENV_PROMPT="(galaxy) "
+    export VIRTUAL_ENV_PROMPT
+fi
+
+# Call hash to forget past commands. Without forgetting
+# past commands the $PATH changes we made may not be respected
+hash -r 2> /dev/null

galaxy/bin/activate.csh

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+# This file must be used with "source bin/activate.csh" *from csh*.
+# You cannot run it directly.
+
+# Created by Davide Di Blasi <davidedb@gmail.com>.
+# Ported to Python 3.3 venv by Andrew Svetlov <andrew.svetlov@gmail.com>
+
+alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PATH" && unset _OLD_VIRTUAL_PATH; rehash; test $?_OLD_VIRTUAL_PROMPT != 0 && set prompt="$_OLD_VIRTUAL_PROMPT" && unset _OLD_VIRTUAL_PROMPT; unsetenv VIRTUAL_ENV; unsetenv VIRTUAL_ENV_PROMPT; test "\!:*" != "nondestructive" && unalias deactivate'
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+setenv VIRTUAL_ENV "/home/th3r3d/Documents/Git/misp-galaxy/galaxy"
+
+set _OLD_VIRTUAL_PATH="$PATH"
+setenv PATH "$VIRTUAL_ENV/bin:$PATH"
+
+
+set _OLD_VIRTUAL_PROMPT="$prompt"
+
+if (! "$?VIRTUAL_ENV_DISABLE_PROMPT") then
+    set prompt = "(galaxy) $prompt"
+    setenv VIRTUAL_ENV_PROMPT "(galaxy) "
+endif
+
+alias pydoc python -m pydoc
+
+rehash

galaxy/bin/activate.fish

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+# This file must be used with "source <venv>/bin/activate.fish" *from fish*
+# (https://fishshell.com/). You cannot run it directly.
+
+function deactivate  -d "Exit virtual environment and return to normal shell environment"
+    # reset old environment variables
+    if test -n "$_OLD_VIRTUAL_PATH"
+        set -gx PATH $_OLD_VIRTUAL_PATH
+        set -e _OLD_VIRTUAL_PATH
+    end
+    if test -n "$_OLD_VIRTUAL_PYTHONHOME"
+        set -gx PYTHONHOME $_OLD_VIRTUAL_PYTHONHOME
+        set -e _OLD_VIRTUAL_PYTHONHOME
+    end
+
+    if test -n "$_OLD_FISH_PROMPT_OVERRIDE"
+        set -e _OLD_FISH_PROMPT_OVERRIDE
+        # prevents error when using nested fish instances (Issue #93858)
+        if functions -q _old_fish_prompt
+            functions -e fish_prompt
+            functions -c _old_fish_prompt fish_prompt
+            functions -e _old_fish_prompt
+        end
+    end
+
+    set -e VIRTUAL_ENV
+    set -e VIRTUAL_ENV_PROMPT
+    if test "$argv[1]" != "nondestructive"
+        # Self-destruct!
+        functions -e deactivate
+    end
+end
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+set -gx VIRTUAL_ENV "/home/th3r3d/Documents/Git/misp-galaxy/galaxy"
+
+set -gx _OLD_VIRTUAL_PATH $PATH
+set -gx PATH "$VIRTUAL_ENV/bin" $PATH
+
+# Unset PYTHONHOME if set.
+if set -q PYTHONHOME
+    set -gx _OLD_VIRTUAL_PYTHONHOME $PYTHONHOME
+    set -e PYTHONHOME
+end
+
+if test -z "$VIRTUAL_ENV_DISABLE_PROMPT"
+    # fish uses a function instead of an env var to generate the prompt.
+
+    # Save the current fish_prompt function as the function _old_fish_prompt.
+    functions -c fish_prompt _old_fish_prompt
+
+    # With the original prompt function renamed, we can override with our own.
+    function fish_prompt
+        # Save the return status of the last command.
+        set -l old_status $status
+
+        # Output the venv prompt; color taken from the blue of the Python logo.
+        printf "%s%s%s" (set_color 4B8BBE) "(galaxy) " (set_color normal)
+
+        # Restore the return status of the previous command.
+        echo "exit $old_status" | .
+        # Output the original/"old" prompt.
+        _old_fish_prompt
+    end
+
+    set -gx _OLD_FISH_PROMPT_OVERRIDE "$VIRTUAL_ENV"
+    set -gx VIRTUAL_ENV_PROMPT "(galaxy) "
+end

galaxy/bin/pip

@@ -0,0 +1,8 @@
+#!/home/th3r3d/Documents/Git/misp-galaxy/galaxy/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

galaxy/bin/pip3

@@ -0,0 +1,8 @@
+#!/home/th3r3d/Documents/Git/misp-galaxy/galaxy/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

galaxy/bin/pip3.12

@@ -0,0 +1,8 @@
+#!/home/th3r3d/Documents/Git/misp-galaxy/galaxy/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

galaxy/bin/python

@@ -0,0 +1 @@
+python3

galaxy/bin/python3

@@ -0,0 +1 @@
+/usr/bin/python3

galaxy/bin/python3.12

@@ -0,0 +1 @@
+python3

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/AUTHORS.txt

@@ -0,0 +1,760 @@
+@Switch01
+A_Rog
+Aakanksha Agrawal
+Abhinav Sagar
+ABHYUDAY PRATAP SINGH
+abs51295
+AceGentile
+Adam Chainz
+Adam Tse
+Adam Wentz
+admin
+Adrien Morison
+ahayrapetyan
+Ahilya
+AinsworthK
+Akash Srivastava
+Alan Yee
+Albert Tugushev
+Albert-Guan
+albertg
+Alberto Sottile
+Aleks Bunin
+Ales Erjavec
+Alethea Flowers
+Alex Gaynor
+Alex Grönholm
+Alex Hedges
+Alex Loosley
+Alex Morega
+Alex Stachowiak
+Alexander Shtyrov
+Alexandre Conrad
+Alexey Popravka
+Aleš Erjavec
+Alli
+Ami Fischman
+Ananya Maiti
+Anatoly Techtonik
+Anders Kaseorg
+Andre Aguiar
+Andreas Lutro
+Andrei Geacar
+Andrew Gaul
+Andrew Shymanel
+Andrey Bienkowski
+Andrey Bulgakov
+Andrés Delfino
+Andy Freeland
+Andy Kluger
+Ani Hayrapetyan
+Aniruddha Basak
+Anish Tambe
+Anrs Hu
+Anthony Sottile
+Antoine Musso
+Anton Ovchinnikov
+Anton Patrushev
+Antonio Alvarado Hernandez
+Antony Lee
+Antti Kaihola
+Anubhav Patel
+Anudit Nagar
+Anuj Godase
+AQNOUCH Mohammed
+AraHaan
+Arindam Choudhury
+Armin Ronacher
+Artem
+Arun Babu Neelicattu
+Ashley Manton
+Ashwin Ramaswami
+atse
+Atsushi Odagiri
+Avinash Karhana
+Avner Cohen
+Awit (Ah-Wit) Ghirmai
+Baptiste Mispelon
+Barney Gale
+barneygale
+Bartek Ogryczak
+Bastian Venthur
+Ben Bodenmiller
+Ben Darnell
+Ben Hoyt
+Ben Mares
+Ben Rosser
+Bence Nagy
+Benjamin Peterson
+Benjamin VanEvery
+Benoit Pierre
+Berker Peksag
+Bernard
+Bernard Tyers
+Bernardo B. Marques
+Bernhard M. Wiedemann
+Bertil Hatt
+Bhavam Vidyarthi
+Blazej Michalik
+Bogdan Opanchuk
+BorisZZZ
+Brad Erickson
+Bradley Ayers
+Brandon L. Reiss
+Brandt Bucher
+Brett Randall
+Brett Rosen
+Brian Cristante
+Brian Rosner
+briantracy
+BrownTruck
+Bruno Oliveira
+Bruno Renié
+Bruno S
+Bstrdsmkr
+Buck Golemon
+burrows
+Bussonnier Matthias
+bwoodsend
+c22
+Caleb Martinez
+Calvin Smith
+Carl Meyer
+Carlos Liam
+Carol Willing
+Carter Thayer
+Cass
+Chandrasekhar Atina
+Chih-Hsuan Yen
+Chris Brinker
+Chris Hunt
+Chris Jerdonek
+Chris Kuehl
+Chris McDonough
+Chris Pawley
+Chris Pryer
+Chris Wolfe
+Christian Clauss
+Christian Heimes
+Christian Oudard
+Christoph Reiter
+Christopher Hunt
+Christopher Snyder
+cjc7373
+Clark Boylan
+Claudio Jolowicz
+Clay McClure
+Cody
+Cody Soyland
+Colin Watson
+Collin Anderson
+Connor Osborn
+Cooper Lees
+Cooper Ry Lees
+Cory Benfield
+Cory Wright
+Craig Kerstiens
+Cristian Sorinel
+Cristina
+Cristina Muñoz
+Curtis Doty
+cytolentino
+Daan De Meyer
+Dale
+Damian
+Damian Quiroga
+Damian Shaw
+Dan Black
+Dan Savilonis
+Dan Sully
+Dane Hillard
+daniel
+Daniel Collins
+Daniel Hahler
+Daniel Holth
+Daniel Jost
+Daniel Katz
+Daniel Shaulov
+Daniele Esposti
+Daniele Nicolodi
+Daniele Procida
+Daniil Konovalenko
+Danny Hermes
+Danny McClanahan
+Darren Kavanagh
+Dav Clark
+Dave Abrahams
+Dave Jones
+David Aguilar
+David Black
+David Bordeynik
+David Caro
+David D Lowe
+David Evans
+David Hewitt
+David Linke
+David Poggi
+David Pursehouse
+David Runge
+David Tucker
+David Wales
+Davidovich
+ddelange
+Deepak Sharma
+Deepyaman Datta
+Denise Yu
+dependabot[bot]
+derwolfe
+Desetude
+Devesh Kumar Singh
+Diego Caraballo
+Diego Ramirez
+DiegoCaraballo
+Dimitri Merejkowsky
+Dimitri Papadopoulos
+Dirk Stolle
+Dmitry Gladkov
+Dmitry Volodin
+Domen Kožar
+Dominic Davis-Foster
+Donald Stufft
+Dongweiming
+doron zarhi
+Dos Moonen
+Douglas Thor
+DrFeathers
+Dustin Ingram
+Dwayne Bailey
+Ed Morley
+Edgar Ramírez
+Edgar Ramírez Mondragón
+Ee Durbin
+Efflam Lemaillet
+efflamlemaillet
+Eitan Adler
+ekristina
+elainechan
+Eli Schwartz
+Elisha Hollander
+Ellen Marie Dash
+Emil Burzo
+Emil Styrke
+Emmanuel Arias
+Endoh Takanao
+enoch
+Erdinc Mutlu
+Eric Cousineau
+Eric Gillingham
+Eric Hanchrow
+Eric Hopper
+Erik M. Bray
+Erik Rose
+Erwin Janssen
+Eugene Vereshchagin
+everdimension
+Federico
+Felipe Peter
+Felix Yan
+fiber-space
+Filip Kokosiński
+Filipe Laíns
+Finn Womack
+finnagin
+Flavio Amurrio
+Florian Briand
+Florian Rathgeber
+Francesco
+Francesco Montesano
+Frost Ming
+Gabriel Curio
+Gabriel de Perthuis
+Garry Polley
+gavin
+gdanielson
+Geoffrey Sneddon
+George Song
+Georgi Valkov
+Georgy Pchelkin
+ghost
+Giftlin Rajaiah
+gizmoguy1
+gkdoc
+Godefroid Chapelle
+Gopinath M
+GOTO Hayato
+gousaiyang
+gpiks
+Greg Roodt
+Greg Ward
+Guilherme Espada
+Guillaume Seguin
+gutsytechster
+Guy Rozendorn
+Guy Tuval
+gzpan123
+Hanjun Kim
+Hari Charan
+Harsh Vardhan
+harupy
+Harutaka Kawamura
+hauntsaninja
+Henrich Hartzer
+Henry Schreiner
+Herbert Pfennig
+Holly Stotelmyer
+Honnix
+Hsiaoming Yang
+Hugo Lopes Tavares
+Hugo van Kemenade
+Hugues Bruant
+Hynek Schlawack
+Ian Bicking
+Ian Cordasco
+Ian Lee
+Ian Stapleton Cordasco
+Ian Wienand
+Igor Kuzmitshov
+Igor Sobreira
+Ilan Schnell
+Illia Volochii
+Ilya Baryshev
+Inada Naoki
+Ionel Cristian Mărieș
+Ionel Maries Cristian
+Itamar Turner-Trauring
+Ivan Pozdeev
+J. Nick Koston
+Jacob Kim
+Jacob Walls
+Jaime Sanz
+jakirkham
+Jakub Kuczys
+Jakub Stasiak
+Jakub Vysoky
+Jakub Wilk
+James Cleveland
+James Curtin
+James Firth
+James Gerity
+James Polley
+Jan Pokorný
+Jannis Leidel
+Jarek Potiuk
+jarondl
+Jason Curtis
+Jason R. Coombs
+JasonMo
+JasonMo1
+Jay Graves
+Jean Abou Samra
+Jean-Christophe Fillion-Robin
+Jeff Barber
+Jeff Dairiki
+Jeff Widman
+Jelmer Vernooij
+jenix21
+Jeremy Stanley
+Jeremy Zafran
+Jesse Rittner
+Jiashuo Li
+Jim Fisher
+Jim Garrison
+Jiun Bae
+Jivan Amara
+Joe Bylund
+Joe Michelini
+John Paton
+John T. Wodder II
+John-Scott Atlakson
+johnthagen
+Jon Banafato
+Jon Dufresne
+Jon Parise
+Jonas Nockert
+Jonathan Herbert
+Joonatan Partanen
+Joost Molenaar
+Jorge Niedbalski
+Joseph Bylund
+Joseph Long
+Josh Bronson
+Josh Hansen
+Josh Schneier
+Joshua
+Juan Luis Cano Rodríguez
+Juanjo Bazán
+Judah Rand
+Julian Berman
+Julian Gethmann
+Julien Demoor
+Jussi Kukkonen
+jwg4
+Jyrki Pulliainen
+Kai Chen
+Kai Mueller
+Kamal Bin Mustafa
+kasium
+kaustav haldar
+keanemind
+Keith Maxwell
+Kelsey Hightower
+Kenneth Belitzky
+Kenneth Reitz
+Kevin Burke
+Kevin Carter
+Kevin Frommelt
+Kevin R Patterson
+Kexuan Sun
+Kit Randel
+Klaas van Schelven
+KOLANICH
+kpinc
+Krishna Oza
+Kumar McMillan
+Kurt McKee
+Kyle Persohn
+lakshmanaram
+Laszlo Kiss-Kollar
+Laurent Bristiel
+Laurent LAPORTE
+Laurie O
+Laurie Opperman
+layday
+Leon Sasson
+Lev Givon
+Lincoln de Sousa
+Lipis
+lorddavidiii
+Loren Carvalho
+Lucas Cimon
+Ludovic Gasc
+Lukas Geiger
+Lukas Juhrich
+Luke Macken
+Luo Jiebin
+luojiebin
+luz.paz
+László Kiss Kollár
+M00nL1ght
+Marc Abramowitz
+Marc Tamlyn
+Marcus Smith
+Mariatta
+Mark Kohler
+Mark Williams
+Markus Hametner
+Martey Dodoo
+Martin Fischer
+Martin Häcker
+Martin Pavlasek
+Masaki
+Masklinn
+Matej Stuchlik
+Mathew Jennings
+Mathieu Bridon
+Mathieu Kniewallner
+Matt Bacchi
+Matt Good
+Matt Maker
+Matt Robenolt
+matthew
+Matthew Einhorn
+Matthew Feickert
+Matthew Gilliard
+Matthew Iversen
+Matthew Treinish
+Matthew Trumbell
+Matthew Willson
+Matthias Bussonnier
+mattip
+Maurits van Rees
+Max W Chase
+Maxim Kurnikov
+Maxime Rouyrre
+mayeut
+mbaluna
+mdebi
+memoselyk
+meowmeowcat
+Michael
+Michael Aquilina
+Michael E. Karpeles
+Michael Klich
+Michael Mintz
+Michael Williamson
+michaelpacer
+Michał Górny
+Mickaël Schoentgen
+Miguel Araujo Perez
+Mihir Singh
+Mike
+Mike Hendricks
+Min RK
+MinRK
+Miro Hrončok
+Monica Baluna
+montefra
+Monty Taylor
+Muha Ajjan‮
+Nadav Wexler
+Nahuel Ambrosini
+Nate Coraor
+Nate Prewitt
+Nathan Houghton
+Nathaniel J. Smith
+Nehal J Wani
+Neil Botelho
+Nguyễn Gia Phong
+Nicholas Serra
+Nick Coghlan
+Nick Stenning
+Nick Timkovich
+Nicolas Bock
+Nicole Harris
+Nikhil Benesch
+Nikhil Ladha
+Nikita Chepanov
+Nikolay Korolev
+Nipunn Koorapati
+Nitesh Sharma
+Niyas Sait
+Noah
+Noah Gorny
+Nowell Strite
+NtaleGrey
+nvdv
+OBITORASU
+Ofek Lev
+ofrinevo
+Oliver Freund
+Oliver Jeeves
+Oliver Mannion
+Oliver Tonnhofer
+Olivier Girardot
+Olivier Grisel
+Ollie Rutherfurd
+OMOTO Kenji
+Omry Yadan
+onlinejudge95
+Oren Held
+Oscar Benjamin
+Oz N Tiram
+Pachwenko
+Patrick Dubroy
+Patrick Jenkins
+Patrick Lawson
+patricktokeeffe
+Patrik Kopkan
+Paul Ganssle
+Paul Kehrer
+Paul Moore
+Paul Nasrat
+Paul Oswald
+Paul van der Linden
+Paulus Schoutsen
+Pavel Safronov
+Pavithra Eswaramoorthy
+Pawel Jasinski
+Paweł Szramowski
+Pekka Klärck
+Peter Gessler
+Peter Lisák
+Peter Waller
+petr-tik
+Phaneendra Chiruvella
+Phil Elson
+Phil Freo
+Phil Pennock
+Phil Whelan
+Philip Jägenstedt
+Philip Molloy
+Philippe Ombredanne
+Pi Delport
+Pierre-Yves Rofes
+Pieter Degroote
+pip
+Prabakaran Kumaresshan
+Prabhjyotsing Surjit Singh Sodhi
+Prabhu Marappan
+Pradyun Gedam
+Prashant Sharma
+Pratik Mallya
+pre-commit-ci[bot]
+Preet Thakkar
+Preston Holmes
+Przemek Wrzos
+Pulkit Goyal
+q0w
+Qiangning Hong
+Qiming Xu
+Quentin Lee
+Quentin Pradet
+R. David Murray
+Rafael Caricio
+Ralf Schmitt
+Razzi Abuissa
+rdb
+Reece Dunham
+Remi Rampin
+Rene Dudfield
+Riccardo Magliocchetti
+Riccardo Schirone
+Richard Jones
+Richard Si
+Ricky Ng-Adam
+Rishi
+RobberPhex
+Robert Collins
+Robert McGibbon
+Robert Pollak
+Robert T. McGibbon
+robin elisha robinson
+Roey Berman
+Rohan Jain
+Roman Bogorodskiy
+Roman Donchenko
+Romuald Brunet
+ronaudinho
+Ronny Pfannschmidt
+Rory McCann
+Ross Brattain
+Roy Wellington Ⅳ
+Ruairidh MacLeod
+Russell Keith-Magee
+Ryan Shepherd
+Ryan Wooden
+ryneeverett
+Sachi King
+Salvatore Rinchiera
+sandeepkiran-js
+Sander Van Balen
+Savio Jomton
+schlamar
+Scott Kitterman
+Sean
+seanj
+Sebastian Jordan
+Sebastian Schaetz
+Segev Finer
+SeongSoo Cho
+Sergey Vasilyev
+Seth Michael Larson
+Seth Woodworth
+Shahar Epstein
+Shantanu
+shireenrao
+Shivansh-007
+Shlomi Fish
+Shovan Maity
+Simeon Visser
+Simon Cross
+Simon Pichugin
+sinoroc
+sinscary
+snook92
+socketubs
+Sorin Sbarnea
+Srinivas Nyayapati
+Stavros Korokithakis
+Stefan Scherfke
+Stefano Rivera
+Stephan Erb
+Stephen Rosen
+stepshal
+Steve (Gadget) Barnes
+Steve Barnes
+Steve Dower
+Steve Kowalik
+Steven Myint
+Steven Silvester
+stonebig
+studioj
+Stéphane Bidoul
+Stéphane Bidoul (ACSONE)
+Stéphane Klein
+Sumana Harihareswara
+Surbhi Sharma
+Sviatoslav Sydorenko
+Swat009
+Sylvain
+Takayuki SHIMIZUKAWA
+Taneli Hukkinen
+tbeswick
+Thiago
+Thijs Triemstra
+Thomas Fenzl
+Thomas Grainger
+Thomas Guettler
+Thomas Johansson
+Thomas Kluyver
+Thomas Smith
+Thomas VINCENT
+Tim D. Smith
+Tim Gates
+Tim Harder
+Tim Heap
+tim smith
+tinruufu
+Tobias Hermann
+Tom Forbes
+Tom Freudenheim
+Tom V
+Tomas Hrnciar
+Tomas Orsava
+Tomer Chachamu
+Tommi Enenkel | AnB
+Tomáš Hrnčiar
+Tony Beswick
+Tony Narlock
+Tony Zhaocheng Tan
+TonyBeswick
+toonarmycaptain
+Toshio Kuratomi
+toxinu
+Travis Swicegood
+Tushar Sadhwani
+Tzu-ping Chung
+Valentin Haenel
+Victor Stinner
+victorvpaulo
+Vikram - Google
+Viktor Szépe
+Ville Skyttä
+Vinay Sajip
+Vincent Philippon
+Vinicyus Macedo
+Vipul Kumar
+Vitaly Babiy
+Vladimir Fokow
+Vladimir Rutsky
+W. Trevor King
+Wil Tan
+Wilfred Hughes
+William Edwards
+William ML Leslie
+William T Olson
+William Woodruff
+Wilson Mo
+wim glenn
+Winson Luk
+Wolfgang Maier
+Wu Zhenyu
+XAMES3
+Xavier Fernandez
+xoviat
+xtreak
+YAMAMOTO Takashi
+Yen Chi Hsuan
+Yeray Diaz Diaz
+Yoval P
+Yu Jian
+Yuan Jing Vincent Yan
+Yusuke Hayashi
+Zearin
+Zhiping Deng
+ziebam
+Zvezdan Petkovic
+Łukasz Langa
+Роман Донченко
+Семён Марьясин
+‮rekcäH nitraM‮

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/INSTALLER

@@ -0,0 +1 @@
+pip

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/LICENSE.txt

@@ -0,0 +1,20 @@
+Copyright (c) 2008-present The pip developers (see AUTHORS.txt file)
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/METADATA

@@ -0,0 +1,88 @@
+Metadata-Version: 2.1
+Name: pip
+Version: 24.0
+Summary: The PyPA recommended tool for installing Python packages.
+Author-email: The pip developers <distutils-sig@python.org>
+License: MIT
+Project-URL: Homepage, https://pip.pypa.io/
+Project-URL: Documentation, https://pip.pypa.io
+Project-URL: Source, https://github.com/pypa/pip
+Project-URL: Changelog, https://pip.pypa.io/en/stable/news/
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Topic :: Software Development :: Build Tools
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Requires-Python: >=3.7
+Description-Content-Type: text/x-rst
+License-File: LICENSE.txt
+License-File: AUTHORS.txt
+
+pip - The Python Package Installer
+==================================
+
+.. image:: https://img.shields.io/pypi/v/pip.svg
+   :target: https://pypi.org/project/pip/
+   :alt: PyPI
+
+.. image:: https://img.shields.io/pypi/pyversions/pip
+   :target: https://pypi.org/project/pip
+   :alt: PyPI - Python Version
+
+.. image:: https://readthedocs.org/projects/pip/badge/?version=latest
+   :target: https://pip.pypa.io/en/latest
+   :alt: Documentation
+
+pip is the `package installer`_ for Python. You can use pip to install packages from the `Python Package Index`_ and other indexes.
+
+Please take a look at our documentation for how to install and use pip:
+
+* `Installation`_
+* `Usage`_
+
+We release updates regularly, with a new version every 3 months. Find more details in our documentation:
+
+* `Release notes`_
+* `Release process`_
+
+If you find bugs, need help, or want to talk to the developers, please use our mailing lists or chat rooms:
+
+* `Issue tracking`_
+* `Discourse channel`_
+* `User IRC`_
+
+If you want to get involved head over to GitHub to get the source code, look at our development documentation and feel free to jump on the developer mailing lists and chat rooms:
+
+* `GitHub page`_
+* `Development documentation`_
+* `Development IRC`_
+
+Code of Conduct
+---------------
+
+Everyone interacting in the pip project's codebases, issue trackers, chat
+rooms, and mailing lists is expected to follow the `PSF Code of Conduct`_.
+
+.. _package installer: https://packaging.python.org/guides/tool-recommendations/
+.. _Python Package Index: https://pypi.org
+.. _Installation: https://pip.pypa.io/en/stable/installation/
+.. _Usage: https://pip.pypa.io/en/stable/
+.. _Release notes: https://pip.pypa.io/en/stable/news.html
+.. _Release process: https://pip.pypa.io/en/latest/development/release-process/
+.. _GitHub page: https://github.com/pypa/pip
+.. _Development documentation: https://pip.pypa.io/en/latest/development
+.. _Issue tracking: https://github.com/pypa/pip/issues
+.. _Discourse channel: https://discuss.python.org/c/packaging
+.. _User IRC: https://kiwiirc.com/nextclient/#ircs://irc.libera.chat:+6697/pypa
+.. _Development IRC: https://kiwiirc.com/nextclient/#ircs://irc.libera.chat:+6697/pypa-dev
+.. _PSF Code of Conduct: https://github.com/pypa/.github/blob/main/CODE_OF_CONDUCT.md

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: bdist_wheel (0.42.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/entry_points.txt

@@ -0,0 +1,4 @@
+[console_scripts]
+pip = pip._internal.cli.main:main
+pip3 = pip._internal.cli.main:main
+pip3.12 = pip._internal.cli.main:main

galaxy/lib/python3.12/site-packages/pip-24.0.dist-info/top_level.txt

@@ -0,0 +1 @@
+pip

galaxy/lib/python3.12/site-packages/pip/__init__.py

@@ -0,0 +1,13 @@
+from typing import List, Optional
+
+__version__ = "24.0"
+
+
+def main(args: Optional[List[str]] = None) -> int:
+    """This is an internal API only meant for use by pip's own console scripts.
+
+    For additional details, see https://github.com/pypa/pip/issues/7498.
+    """
+    from pip._internal.utils.entrypoints import _wrapper
+
+    return _wrapper(args)

galaxy/lib/python3.12/site-packages/pip/__main__.py

@@ -0,0 +1,24 @@
+import os
+import sys
+
+# Remove '' and current working directory from the first entry
+# of sys.path, if present to avoid using current directory
+# in pip commands check, freeze, install, list and show,
+# when invoked as python -m pip <command>
+if sys.path[0] in ("", os.getcwd()):
+    sys.path.pop(0)
+
+# If we are running from a wheel, add the wheel to sys.path
+# This allows the usage python pip-*.whl/pip install pip-*.whl
+if __package__ == "":
+    # __file__ is pip-*.whl/pip/__main__.py
+    # first dirname call strips of '/__main__.py', second strips off '/pip'
+    # Resulting path is the name of the wheel itself
+    # Add that to sys.path so we can import pip
+    path = os.path.dirname(os.path.dirname(__file__))
+    sys.path.insert(0, path)
+
+if __name__ == "__main__":
+    from pip._internal.cli.main import main as _main
+
+    sys.exit(_main())

galaxy/lib/python3.12/site-packages/pip/__pip-runner__.py

@@ -0,0 +1,50 @@
+"""Execute exactly this copy of pip, within a different environment.
+
+This file is named as it is, to ensure that this module can't be imported via
+an import statement.
+"""
+
+# /!\ This version compatibility check section must be Python 2 compatible. /!\
+
+import sys
+
+# Copied from setup.py
+PYTHON_REQUIRES = (3, 7)
+
+
+def version_str(version):  # type: ignore
+    return ".".join(str(v) for v in version)
+
+
+if sys.version_info[:2] < PYTHON_REQUIRES:
+    raise SystemExit(
+        "This version of pip does not support python {} (requires >={}).".format(
+            version_str(sys.version_info[:2]), version_str(PYTHON_REQUIRES)
+        )
+    )
+
+# From here on, we can use Python 3 features, but the syntax must remain
+# Python 2 compatible.
+
+import runpy  # noqa: E402
+from importlib.machinery import PathFinder  # noqa: E402
+from os.path import dirname  # noqa: E402
+
+PIP_SOURCES_ROOT = dirname(dirname(__file__))
+
+
+class PipImportRedirectingFinder:
+    @classmethod
+    def find_spec(self, fullname, path=None, target=None):  # type: ignore
+        if fullname != "pip":
+            return None
+
+        spec = PathFinder.find_spec(fullname, [PIP_SOURCES_ROOT], target)
+        assert spec, (PIP_SOURCES_ROOT, fullname)
+        return spec
+
+
+sys.meta_path.insert(0, PipImportRedirectingFinder())
+
+assert __name__ == "__main__", "Cannot run __pip-runner__.py as a non-main module"
+runpy.run_module("pip", run_name="__main__", alter_sys=True)

galaxy/lib/python3.12/site-packages/pip/_internal/__init__.py

@@ -0,0 +1,18 @@
+from typing import List, Optional
+
+from pip._internal.utils import _log
+
+# init_logging() must be called before any call to logging.getLogger()
+# which happens at import of most modules.
+_log.init_logging()
+
+
+def main(args: (Optional[List[str]]) = None) -> int:
+    """This is preserved for old console scripts that may still be referencing
+    it.
+
+    For additional details, see https://github.com/pypa/pip/issues/7498.
+    """
+    from pip._internal.utils.entrypoints import _wrapper
+
+    return _wrapper(args)

galaxy/lib/python3.12/site-packages/pip/_internal/build_env.py

@@ -0,0 +1,311 @@
+"""Build Environment used for isolation during sdist building
+"""
+
+import logging
+import os
+import pathlib
+import site
+import sys
+import textwrap
+from collections import OrderedDict
+from types import TracebackType
+from typing import TYPE_CHECKING, Iterable, List, Optional, Set, Tuple, Type, Union
+
+from pip._vendor.certifi import where
+from pip._vendor.packaging.requirements import Requirement
+from pip._vendor.packaging.version import Version
+
+from pip import __file__ as pip_location
+from pip._internal.cli.spinners import open_spinner
+from pip._internal.locations import get_platlib, get_purelib, get_scheme
+from pip._internal.metadata import get_default_environment, get_environment
+from pip._internal.utils.subprocess import call_subprocess
+from pip._internal.utils.temp_dir import TempDirectory, tempdir_kinds
+
+if TYPE_CHECKING:
+    from pip._internal.index.package_finder import PackageFinder
+
+logger = logging.getLogger(__name__)
+
+
+def _dedup(a: str, b: str) -> Union[Tuple[str], Tuple[str, str]]:
+    return (a, b) if a != b else (a,)
+
+
+class _Prefix:
+    def __init__(self, path: str) -> None:
+        self.path = path
+        self.setup = False
+        scheme = get_scheme("", prefix=path)
+        self.bin_dir = scheme.scripts
+        self.lib_dirs = _dedup(scheme.purelib, scheme.platlib)
+
+
+def get_runnable_pip() -> str:
+    """Get a file to pass to a Python executable, to run the currently-running pip.
+
+    This is used to run a pip subprocess, for installing requirements into the build
+    environment.
+    """
+    source = pathlib.Path(pip_location).resolve().parent
+
+    if not source.is_dir():
+        # This would happen if someone is using pip from inside a zip file. In that
+        # case, we can use that directly.
+        return str(source)
+
+    return os.fsdecode(source / "__pip-runner__.py")
+
+
+def _get_system_sitepackages() -> Set[str]:
+    """Get system site packages
+
+    Usually from site.getsitepackages,
+    but fallback on `get_purelib()/get_platlib()` if unavailable
+    (e.g. in a virtualenv created by virtualenv<20)
+
+    Returns normalized set of strings.
+    """
+    if hasattr(site, "getsitepackages"):
+        system_sites = site.getsitepackages()
+    else:
+        # virtualenv < 20 overwrites site.py without getsitepackages
+        # fallback on get_purelib/get_platlib.
+        # this is known to miss things, but shouldn't in the cases
+        # where getsitepackages() has been removed (inside a virtualenv)
+        system_sites = [get_purelib(), get_platlib()]
+    return {os.path.normcase(path) for path in system_sites}
+
+
+class BuildEnvironment:
+    """Creates and manages an isolated environment to install build deps"""
+
+    def __init__(self) -> None:
+        temp_dir = TempDirectory(kind=tempdir_kinds.BUILD_ENV, globally_managed=True)
+
+        self._prefixes = OrderedDict(
+            (name, _Prefix(os.path.join(temp_dir.path, name)))
+            for name in ("normal", "overlay")
+        )
+
+        self._bin_dirs: List[str] = []
+        self._lib_dirs: List[str] = []
+        for prefix in reversed(list(self._prefixes.values())):
+            self._bin_dirs.append(prefix.bin_dir)
+            self._lib_dirs.extend(prefix.lib_dirs)
+
+        # Customize site to:
+        # - ensure .pth files are honored
+        # - prevent access to system site packages
+        system_sites = _get_system_sitepackages()
+
+        self._site_dir = os.path.join(temp_dir.path, "site")
+        if not os.path.exists(self._site_dir):
+            os.mkdir(self._site_dir)
+        with open(
+            os.path.join(self._site_dir, "sitecustomize.py"), "w", encoding="utf-8"
+        ) as fp:
+            fp.write(
+                textwrap.dedent(
+                    """
+                import os, site, sys
+
+                # First, drop system-sites related paths.
+                original_sys_path = sys.path[:]
+                known_paths = set()
+                for path in {system_sites!r}:
+                    site.addsitedir(path, known_paths=known_paths)
+                system_paths = set(
+                    os.path.normcase(path)
+                    for path in sys.path[len(original_sys_path):]
+                )
+                original_sys_path = [
+                    path for path in original_sys_path
+                    if os.path.normcase(path) not in system_paths
+                ]
+                sys.path = original_sys_path
+
+                # Second, add lib directories.
+                # ensuring .pth file are processed.
+                for path in {lib_dirs!r}:
+                    assert not path in sys.path
+                    site.addsitedir(path)
+                """
+                ).format(system_sites=system_sites, lib_dirs=self._lib_dirs)
+            )
+
+    def __enter__(self) -> None:
+        self._save_env = {
+            name: os.environ.get(name, None)
+            for name in ("PATH", "PYTHONNOUSERSITE", "PYTHONPATH")
+        }
+
+        path = self._bin_dirs[:]
+        old_path = self._save_env["PATH"]
+        if old_path:
+            path.extend(old_path.split(os.pathsep))
+
+        pythonpath = [self._site_dir]
+
+        os.environ.update(
+            {
+                "PATH": os.pathsep.join(path),
+                "PYTHONNOUSERSITE": "1",
+                "PYTHONPATH": os.pathsep.join(pythonpath),
+            }
+        )
+
+    def __exit__(
+        self,
+        exc_type: Optional[Type[BaseException]],
+        exc_val: Optional[BaseException],
+        exc_tb: Optional[TracebackType],
+    ) -> None:
+        for varname, old_value in self._save_env.items():
+            if old_value is None:
+                os.environ.pop(varname, None)
+            else:
+                os.environ[varname] = old_value
+
+    def check_requirements(
+        self, reqs: Iterable[str]
+    ) -> Tuple[Set[Tuple[str, str]], Set[str]]:
+        """Return 2 sets:
+        - conflicting requirements: set of (installed, wanted) reqs tuples
+        - missing requirements: set of reqs
+        """
+        missing = set()
+        conflicting = set()
+        if reqs:
+            env = (
+                get_environment(self._lib_dirs)
+                if hasattr(self, "_lib_dirs")
+                else get_default_environment()
+            )
+            for req_str in reqs:
+                req = Requirement(req_str)
+                # We're explicitly evaluating with an empty extra value, since build
+                # environments are not provided any mechanism to select specific extras.
+                if req.marker is not None and not req.marker.evaluate({"extra": ""}):
+                    continue
+                dist = env.get_distribution(req.name)
+                if not dist:
+                    missing.add(req_str)
+                    continue
+                if isinstance(dist.version, Version):
+                    installed_req_str = f"{req.name}=={dist.version}"
+                else:
+                    installed_req_str = f"{req.name}==={dist.version}"
+                if not req.specifier.contains(dist.version, prereleases=True):
+                    conflicting.add((installed_req_str, req_str))
+                # FIXME: Consider direct URL?
+        return conflicting, missing
+
+    def install_requirements(
+        self,
+        finder: "PackageFinder",
+        requirements: Iterable[str],
+        prefix_as_string: str,
+        *,
+        kind: str,
+    ) -> None:
+        prefix = self._prefixes[prefix_as_string]
+        assert not prefix.setup
+        prefix.setup = True
+        if not requirements:
+            return
+        self._install_requirements(
+            get_runnable_pip(),
+            finder,
+            requirements,
+            prefix,
+            kind=kind,
+        )
+
+    @staticmethod
+    def _install_requirements(
+        pip_runnable: str,
+        finder: "PackageFinder",
+        requirements: Iterable[str],
+        prefix: _Prefix,
+        *,
+        kind: str,
+    ) -> None:
+        args: List[str] = [
+            sys.executable,
+            pip_runnable,
+            "install",
+            "--ignore-installed",
+            "--no-user",
+            "--prefix",
+            prefix.path,
+            "--no-warn-script-location",
+        ]
+        if logger.getEffectiveLevel() <= logging.DEBUG:
+            args.append("-v")
+        for format_control in ("no_binary", "only_binary"):
+            formats = getattr(finder.format_control, format_control)
+            args.extend(
+                (
+                    "--" + format_control.replace("_", "-"),
+                    ",".join(sorted(formats or {":none:"})),
+                )
+            )
+
+        index_urls = finder.index_urls
+        if index_urls:
+            args.extend(["-i", index_urls[0]])
+            for extra_index in index_urls[1:]:
+                args.extend(["--extra-index-url", extra_index])
+        else:
+            args.append("--no-index")
+        for link in finder.find_links:
+            args.extend(["--find-links", link])
+
+        for host in finder.trusted_hosts:
+            args.extend(["--trusted-host", host])
+        if finder.allow_all_prereleases:
+            args.append("--pre")
+        if finder.prefer_binary:
+            args.append("--prefer-binary")
+        args.append("--")
+        args.extend(requirements)
+        extra_environ = {"_PIP_STANDALONE_CERT": where()}
+        with open_spinner(f"Installing {kind}") as spinner:
+            call_subprocess(
+                args,
+                command_desc=f"pip subprocess to install {kind}",
+                spinner=spinner,
+                extra_environ=extra_environ,
+            )
+
+
+class NoOpBuildEnvironment(BuildEnvironment):
+    """A no-op drop-in replacement for BuildEnvironment"""
+
+    def __init__(self) -> None:
+        pass
+
+    def __enter__(self) -> None:
+        pass
+
+    def __exit__(
+        self,
+        exc_type: Optional[Type[BaseException]],
+        exc_val: Optional[BaseException],
+        exc_tb: Optional[TracebackType],
+    ) -> None:
+        pass
+
+    def cleanup(self) -> None:
+        pass
+
+    def install_requirements(
+        self,
+        finder: "PackageFinder",
+        requirements: Iterable[str],
+        prefix_as_string: str,
+        *,
+        kind: str,
+    ) -> None:
+        raise NotImplementedError()

galaxy/lib/python3.12/site-packages/pip/_internal/cache.py

@@ -0,0 +1,290 @@
+"""Cache Management
+"""
+
+import hashlib
+import json
+import logging
+import os
+from pathlib import Path
+from typing import Any, Dict, List, Optional
+
+from pip._vendor.packaging.tags import Tag, interpreter_name, interpreter_version
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.exceptions import InvalidWheelFilename
+from pip._internal.models.direct_url import DirectUrl
+from pip._internal.models.link import Link
+from pip._internal.models.wheel import Wheel
+from pip._internal.utils.temp_dir import TempDirectory, tempdir_kinds
+from pip._internal.utils.urls import path_to_url
+
+logger = logging.getLogger(__name__)
+
+ORIGIN_JSON_NAME = "origin.json"
+
+
+def _hash_dict(d: Dict[str, str]) -> str:
+    """Return a stable sha224 of a dictionary."""
+    s = json.dumps(d, sort_keys=True, separators=(",", ":"), ensure_ascii=True)
+    return hashlib.sha224(s.encode("ascii")).hexdigest()
+
+
+class Cache:
+    """An abstract class - provides cache directories for data from links
+
+    :param cache_dir: The root of the cache.
+    """
+
+    def __init__(self, cache_dir: str) -> None:
+        super().__init__()
+        assert not cache_dir or os.path.isabs(cache_dir)
+        self.cache_dir = cache_dir or None
+
+    def _get_cache_path_parts(self, link: Link) -> List[str]:
+        """Get parts of part that must be os.path.joined with cache_dir"""
+
+        # We want to generate an url to use as our cache key, we don't want to
+        # just re-use the URL because it might have other items in the fragment
+        # and we don't care about those.
+        key_parts = {"url": link.url_without_fragment}
+        if link.hash_name is not None and link.hash is not None:
+            key_parts[link.hash_name] = link.hash
+        if link.subdirectory_fragment:
+            key_parts["subdirectory"] = link.subdirectory_fragment
+
+        # Include interpreter name, major and minor version in cache key
+        # to cope with ill-behaved sdists that build a different wheel
+        # depending on the python version their setup.py is being run on,
+        # and don't encode the difference in compatibility tags.
+        # https://github.com/pypa/pip/issues/7296
+        key_parts["interpreter_name"] = interpreter_name()
+        key_parts["interpreter_version"] = interpreter_version()
+
+        # Encode our key url with sha224, we'll use this because it has similar
+        # security properties to sha256, but with a shorter total output (and
+        # thus less secure). However the differences don't make a lot of
+        # difference for our use case here.
+        hashed = _hash_dict(key_parts)
+
+        # We want to nest the directories some to prevent having a ton of top
+        # level directories where we might run out of sub directories on some
+        # FS.
+        parts = [hashed[:2], hashed[2:4], hashed[4:6], hashed[6:]]
+
+        return parts
+
+    def _get_candidates(self, link: Link, canonical_package_name: str) -> List[Any]:
+        can_not_cache = not self.cache_dir or not canonical_package_name or not link
+        if can_not_cache:
+            return []
+
+        path = self.get_path_for_link(link)
+        if os.path.isdir(path):
+            return [(candidate, path) for candidate in os.listdir(path)]
+        return []
+
+    def get_path_for_link(self, link: Link) -> str:
+        """Return a directory to store cached items in for link."""
+        raise NotImplementedError()
+
+    def get(
+        self,
+        link: Link,
+        package_name: Optional[str],
+        supported_tags: List[Tag],
+    ) -> Link:
+        """Returns a link to a cached item if it exists, otherwise returns the
+        passed link.
+        """
+        raise NotImplementedError()
+
+
+class SimpleWheelCache(Cache):
+    """A cache of wheels for future installs."""
+
+    def __init__(self, cache_dir: str) -> None:
+        super().__init__(cache_dir)
+
+    def get_path_for_link(self, link: Link) -> str:
+        """Return a directory to store cached wheels for link
+
+        Because there are M wheels for any one sdist, we provide a directory
+        to cache them in, and then consult that directory when looking up
+        cache hits.
+
+        We only insert things into the cache if they have plausible version
+        numbers, so that we don't contaminate the cache with things that were
+        not unique. E.g. ./package might have dozens of installs done for it
+        and build a version of 0.0...and if we built and cached a wheel, we'd
+        end up using the same wheel even if the source has been edited.
+
+        :param link: The link of the sdist for which this will cache wheels.
+        """
+        parts = self._get_cache_path_parts(link)
+        assert self.cache_dir
+        # Store wheels within the root cache_dir
+        return os.path.join(self.cache_dir, "wheels", *parts)
+
+    def get(
+        self,
+        link: Link,
+        package_name: Optional[str],
+        supported_tags: List[Tag],
+    ) -> Link:
+        candidates = []
+
+        if not package_name:
+            return link
+
+        canonical_package_name = canonicalize_name(package_name)
+        for wheel_name, wheel_dir in self._get_candidates(link, canonical_package_name):
+            try:
+                wheel = Wheel(wheel_name)
+            except InvalidWheelFilename:
+                continue
+            if canonicalize_name(wheel.name) != canonical_package_name:
+                logger.debug(
+                    "Ignoring cached wheel %s for %s as it "
+                    "does not match the expected distribution name %s.",
+                    wheel_name,
+                    link,
+                    package_name,
+                )
+                continue
+            if not wheel.supported(supported_tags):
+                # Built for a different python/arch/etc
+                continue
+            candidates.append(
+                (
+                    wheel.support_index_min(supported_tags),
+                    wheel_name,
+                    wheel_dir,
+                )
+            )
+
+        if not candidates:
+            return link
+
+        _, wheel_name, wheel_dir = min(candidates)
+        return Link(path_to_url(os.path.join(wheel_dir, wheel_name)))
+
+
+class EphemWheelCache(SimpleWheelCache):
+    """A SimpleWheelCache that creates it's own temporary cache directory"""
+
+    def __init__(self) -> None:
+        self._temp_dir = TempDirectory(
+            kind=tempdir_kinds.EPHEM_WHEEL_CACHE,
+            globally_managed=True,
+        )
+
+        super().__init__(self._temp_dir.path)
+
+
+class CacheEntry:
+    def __init__(
+        self,
+        link: Link,
+        persistent: bool,
+    ):
+        self.link = link
+        self.persistent = persistent
+        self.origin: Optional[DirectUrl] = None
+        origin_direct_url_path = Path(self.link.file_path).parent / ORIGIN_JSON_NAME
+        if origin_direct_url_path.exists():
+            try:
+                self.origin = DirectUrl.from_json(
+                    origin_direct_url_path.read_text(encoding="utf-8")
+                )
+            except Exception as e:
+                logger.warning(
+                    "Ignoring invalid cache entry origin file %s for %s (%s)",
+                    origin_direct_url_path,
+                    link.filename,
+                    e,
+                )
+
+
+class WheelCache(Cache):
+    """Wraps EphemWheelCache and SimpleWheelCache into a single Cache
+
+    This Cache allows for gracefully degradation, using the ephem wheel cache
+    when a certain link is not found in the simple wheel cache first.
+    """
+
+    def __init__(self, cache_dir: str) -> None:
+        super().__init__(cache_dir)
+        self._wheel_cache = SimpleWheelCache(cache_dir)
+        self._ephem_cache = EphemWheelCache()
+
+    def get_path_for_link(self, link: Link) -> str:
+        return self._wheel_cache.get_path_for_link(link)
+
+    def get_ephem_path_for_link(self, link: Link) -> str:
+        return self._ephem_cache.get_path_for_link(link)
+
+    def get(
+        self,
+        link: Link,
+        package_name: Optional[str],
+        supported_tags: List[Tag],
+    ) -> Link:
+        cache_entry = self.get_cache_entry(link, package_name, supported_tags)
+        if cache_entry is None:
+            return link
+        return cache_entry.link
+
+    def get_cache_entry(
+        self,
+        link: Link,
+        package_name: Optional[str],
+        supported_tags: List[Tag],
+    ) -> Optional[CacheEntry]:
+        """Returns a CacheEntry with a link to a cached item if it exists or
+        None. The cache entry indicates if the item was found in the persistent
+        or ephemeral cache.
+        """
+        retval = self._wheel_cache.get(
+            link=link,
+            package_name=package_name,
+            supported_tags=supported_tags,
+        )
+        if retval is not link:
+            return CacheEntry(retval, persistent=True)
+
+        retval = self._ephem_cache.get(
+            link=link,
+            package_name=package_name,
+            supported_tags=supported_tags,
+        )
+        if retval is not link:
+            return CacheEntry(retval, persistent=False)
+
+        return None
+
+    @staticmethod
+    def record_download_origin(cache_dir: str, download_info: DirectUrl) -> None:
+        origin_path = Path(cache_dir) / ORIGIN_JSON_NAME
+        if origin_path.exists():
+            try:
+                origin = DirectUrl.from_json(origin_path.read_text(encoding="utf-8"))
+            except Exception as e:
+                logger.warning(
+                    "Could not read origin file %s in cache entry (%s). "
+                    "Will attempt to overwrite it.",
+                    origin_path,
+                    e,
+                )
+            else:
+                # TODO: use DirectUrl.equivalent when
+                # https://github.com/pypa/pip/pull/10564 is merged.
+                if origin.url != download_info.url:
+                    logger.warning(
+                        "Origin URL %s in cache entry %s does not match download URL "
+                        "%s. This is likely a pip bug or a cache corruption issue. "
+                        "Will overwrite it with the new value.",
+                        origin.url,
+                        cache_dir,
+                        download_info.url,
+                    )
+        origin_path.write_text(download_info.to_json(), encoding="utf-8")

galaxy/lib/python3.12/site-packages/pip/_internal/cli/__init__.py

@@ -0,0 +1,4 @@
+"""Subpackage containing all of pip's command line interface related code
+"""
+
+# This file intentionally does not import submodules

galaxy/lib/python3.12/site-packages/pip/_internal/cli/autocompletion.py

@@ -0,0 +1,172 @@
+"""Logic that powers autocompletion installed by ``pip completion``.
+"""
+
+import optparse
+import os
+import sys
+from itertools import chain
+from typing import Any, Iterable, List, Optional
+
+from pip._internal.cli.main_parser import create_main_parser
+from pip._internal.commands import commands_dict, create_command
+from pip._internal.metadata import get_default_environment
+
+
+def autocomplete() -> None:
+    """Entry Point for completion of main and subcommand options."""
+    # Don't complete if user hasn't sourced bash_completion file.
+    if "PIP_AUTO_COMPLETE" not in os.environ:
+        return
+    cwords = os.environ["COMP_WORDS"].split()[1:]
+    cword = int(os.environ["COMP_CWORD"])
+    try:
+        current = cwords[cword - 1]
+    except IndexError:
+        current = ""
+
+    parser = create_main_parser()
+    subcommands = list(commands_dict)
+    options = []
+
+    # subcommand
+    subcommand_name: Optional[str] = None
+    for word in cwords:
+        if word in subcommands:
+            subcommand_name = word
+            break
+    # subcommand options
+    if subcommand_name is not None:
+        # special case: 'help' subcommand has no options
+        if subcommand_name == "help":
+            sys.exit(1)
+        # special case: list locally installed dists for show and uninstall
+        should_list_installed = not current.startswith("-") and subcommand_name in [
+            "show",
+            "uninstall",
+        ]
+        if should_list_installed:
+            env = get_default_environment()
+            lc = current.lower()
+            installed = [
+                dist.canonical_name
+                for dist in env.iter_installed_distributions(local_only=True)
+                if dist.canonical_name.startswith(lc)
+                and dist.canonical_name not in cwords[1:]
+            ]
+            # if there are no dists installed, fall back to option completion
+            if installed:
+                for dist in installed:
+                    print(dist)
+                sys.exit(1)
+
+        should_list_installables = (
+            not current.startswith("-") and subcommand_name == "install"
+        )
+        if should_list_installables:
+            for path in auto_complete_paths(current, "path"):
+                print(path)
+            sys.exit(1)
+
+        subcommand = create_command(subcommand_name)
+
+        for opt in subcommand.parser.option_list_all:
+            if opt.help != optparse.SUPPRESS_HELP:
+                options += [
+                    (opt_str, opt.nargs) for opt_str in opt._long_opts + opt._short_opts
+                ]
+
+        # filter out previously specified options from available options
+        prev_opts = [x.split("=")[0] for x in cwords[1 : cword - 1]]
+        options = [(x, v) for (x, v) in options if x not in prev_opts]
+        # filter options by current input
+        options = [(k, v) for k, v in options if k.startswith(current)]
+        # get completion type given cwords and available subcommand options
+        completion_type = get_path_completion_type(
+            cwords,
+            cword,
+            subcommand.parser.option_list_all,
+        )
+        # get completion files and directories if ``completion_type`` is
+        # ``<file>``, ``<dir>`` or ``<path>``
+        if completion_type:
+            paths = auto_complete_paths(current, completion_type)
+            options = [(path, 0) for path in paths]
+        for option in options:
+            opt_label = option[0]
+            # append '=' to options which require args
+            if option[1] and option[0][:2] == "--":
+                opt_label += "="
+            print(opt_label)
+    else:
+        # show main parser options only when necessary
+
+        opts = [i.option_list for i in parser.option_groups]
+        opts.append(parser.option_list)
+        flattened_opts = chain.from_iterable(opts)
+        if current.startswith("-"):
+            for opt in flattened_opts:
+                if opt.help != optparse.SUPPRESS_HELP:
+                    subcommands += opt._long_opts + opt._short_opts
+        else:
+            # get completion type given cwords and all available options
+            completion_type = get_path_completion_type(cwords, cword, flattened_opts)
+            if completion_type:
+                subcommands = list(auto_complete_paths(current, completion_type))
+
+        print(" ".join([x for x in subcommands if x.startswith(current)]))
+    sys.exit(1)
+
+
+def get_path_completion_type(
+    cwords: List[str], cword: int, opts: Iterable[Any]
+) -> Optional[str]:
+    """Get the type of path completion (``file``, ``dir``, ``path`` or None)
+
+    :param cwords: same as the environmental variable ``COMP_WORDS``
+    :param cword: same as the environmental variable ``COMP_CWORD``
+    :param opts: The available options to check
+    :return: path completion type (``file``, ``dir``, ``path`` or None)
+    """
+    if cword < 2 or not cwords[cword - 2].startswith("-"):
+        return None
+    for opt in opts:
+        if opt.help == optparse.SUPPRESS_HELP:
+            continue
+        for o in str(opt).split("/"):
+            if cwords[cword - 2].split("=")[0] == o:
+                if not opt.metavar or any(
+                    x in ("path", "file", "dir") for x in opt.metavar.split("/")
+                ):
+                    return opt.metavar
+    return None
+
+
+def auto_complete_paths(current: str, completion_type: str) -> Iterable[str]:
+    """If ``completion_type`` is ``file`` or ``path``, list all regular files
+    and directories starting with ``current``; otherwise only list directories
+    starting with ``current``.
+
+    :param current: The word to be completed
+    :param completion_type: path completion type(``file``, ``path`` or ``dir``)
+    :return: A generator of regular files and/or directories
+    """
+    directory, filename = os.path.split(current)
+    current_path = os.path.abspath(directory)
+    # Don't complete paths if they can't be accessed
+    if not os.access(current_path, os.R_OK):
+        return
+    filename = os.path.normcase(filename)
+    # list all files that start with ``filename``
+    file_list = (
+        x for x in os.listdir(current_path) if os.path.normcase(x).startswith(filename)
+    )
+    for f in file_list:
+        opt = os.path.join(current_path, f)
+        comp_file = os.path.normcase(os.path.join(directory, f))
+        # complete regular files when there is not ``<dir>`` after option
+        # complete directories when there is ``<file>``, ``<path>`` or
+        # ``<dir>``after option
+        if completion_type != "dir" and os.path.isfile(opt):
+            yield comp_file
+        elif os.path.isdir(opt):
+            yield os.path.join(comp_file, "")

galaxy/lib/python3.12/site-packages/pip/_internal/cli/base_command.py

@@ -0,0 +1,236 @@
+"""Base Command class, and related routines"""
+
+import functools
+import logging
+import logging.config
+import optparse
+import os
+import sys
+import traceback
+from optparse import Values
+from typing import Any, Callable, List, Optional, Tuple
+
+from pip._vendor.rich import traceback as rich_traceback
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.command_context import CommandContextMixIn
+from pip._internal.cli.parser import ConfigOptionParser, UpdatingDefaultsHelpFormatter
+from pip._internal.cli.status_codes import (
+    ERROR,
+    PREVIOUS_BUILD_DIR_ERROR,
+    UNKNOWN_ERROR,
+    VIRTUALENV_NOT_FOUND,
+)
+from pip._internal.exceptions import (
+    BadCommand,
+    CommandError,
+    DiagnosticPipError,
+    InstallationError,
+    NetworkConnectionError,
+    PreviousBuildDirError,
+    UninstallationError,
+)
+from pip._internal.utils.filesystem import check_path_owner
+from pip._internal.utils.logging import BrokenStdoutLoggingError, setup_logging
+from pip._internal.utils.misc import get_prog, normalize_path
+from pip._internal.utils.temp_dir import TempDirectoryTypeRegistry as TempDirRegistry
+from pip._internal.utils.temp_dir import global_tempdir_manager, tempdir_registry
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+__all__ = ["Command"]
+
+logger = logging.getLogger(__name__)
+
+
+class Command(CommandContextMixIn):
+    usage: str = ""
+    ignore_require_venv: bool = False
+
+    def __init__(self, name: str, summary: str, isolated: bool = False) -> None:
+        super().__init__()
+
+        self.name = name
+        self.summary = summary
+        self.parser = ConfigOptionParser(
+            usage=self.usage,
+            prog=f"{get_prog()} {name}",
+            formatter=UpdatingDefaultsHelpFormatter(),
+            add_help_option=False,
+            name=name,
+            description=self.__doc__,
+            isolated=isolated,
+        )
+
+        self.tempdir_registry: Optional[TempDirRegistry] = None
+
+        # Commands should add options to this option group
+        optgroup_name = f"{self.name.capitalize()} Options"
+        self.cmd_opts = optparse.OptionGroup(self.parser, optgroup_name)
+
+        # Add the general options
+        gen_opts = cmdoptions.make_option_group(
+            cmdoptions.general_group,
+            self.parser,
+        )
+        self.parser.add_option_group(gen_opts)
+
+        self.add_options()
+
+    def add_options(self) -> None:
+        pass
+
+    def handle_pip_version_check(self, options: Values) -> None:
+        """
+        This is a no-op so that commands by default do not do the pip version
+        check.
+        """
+        # Make sure we do the pip version check if the index_group options
+        # are present.
+        assert not hasattr(options, "no_index")
+
+    def run(self, options: Values, args: List[str]) -> int:
+        raise NotImplementedError
+
+    def parse_args(self, args: List[str]) -> Tuple[Values, List[str]]:
+        # factored out for testability
+        return self.parser.parse_args(args)
+
+    def main(self, args: List[str]) -> int:
+        try:
+            with self.main_context():
+                return self._main(args)
+        finally:
+            logging.shutdown()
+
+    def _main(self, args: List[str]) -> int:
+        # We must initialize this before the tempdir manager, otherwise the
+        # configuration would not be accessible by the time we clean up the
+        # tempdir manager.
+        self.tempdir_registry = self.enter_context(tempdir_registry())
+        # Intentionally set as early as possible so globally-managed temporary
+        # directories are available to the rest of the code.
+        self.enter_context(global_tempdir_manager())
+
+        options, args = self.parse_args(args)
+
+        # Set verbosity so that it can be used elsewhere.
+        self.verbosity = options.verbose - options.quiet
+
+        level_number = setup_logging(
+            verbosity=self.verbosity,
+            no_color=options.no_color,
+            user_log_file=options.log,
+        )
+
+        always_enabled_features = set(options.features_enabled) & set(
+            cmdoptions.ALWAYS_ENABLED_FEATURES
+        )
+        if always_enabled_features:
+            logger.warning(
+                "The following features are always enabled: %s. ",
+                ", ".join(sorted(always_enabled_features)),
+            )
+
+        # Make sure that the --python argument isn't specified after the
+        # subcommand. We can tell, because if --python was specified,
+        # we should only reach this point if we're running in the created
+        # subprocess, which has the _PIP_RUNNING_IN_SUBPROCESS environment
+        # variable set.
+        if options.python and "_PIP_RUNNING_IN_SUBPROCESS" not in os.environ:
+            logger.critical(
+                "The --python option must be placed before the pip subcommand name"
+            )
+            sys.exit(ERROR)
+
+        # TODO: Try to get these passing down from the command?
+        #       without resorting to os.environ to hold these.
+        #       This also affects isolated builds and it should.
+
+        if options.no_input:
+            os.environ["PIP_NO_INPUT"] = "1"
+
+        if options.exists_action:
+            os.environ["PIP_EXISTS_ACTION"] = " ".join(options.exists_action)
+
+        if options.require_venv and not self.ignore_require_venv:
+            # If a venv is required check if it can really be found
+            if not running_under_virtualenv():
+                logger.critical("Could not find an activated virtualenv (required).")
+                sys.exit(VIRTUALENV_NOT_FOUND)
+
+        if options.cache_dir:
+            options.cache_dir = normalize_path(options.cache_dir)
+            if not check_path_owner(options.cache_dir):
+                logger.warning(
+                    "The directory '%s' or its parent directory is not owned "
+                    "or is not writable by the current user. The cache "
+                    "has been disabled. Check the permissions and owner of "
+                    "that directory. If executing pip with sudo, you should "
+                    "use sudo's -H flag.",
+                    options.cache_dir,
+                )
+                options.cache_dir = None
+
+        def intercepts_unhandled_exc(
+            run_func: Callable[..., int]
+        ) -> Callable[..., int]:
+            @functools.wraps(run_func)
+            def exc_logging_wrapper(*args: Any) -> int:
+                try:
+                    status = run_func(*args)
+                    assert isinstance(status, int)
+                    return status
+                except DiagnosticPipError as exc:
+                    logger.error("%s", exc, extra={"rich": True})
+                    logger.debug("Exception information:", exc_info=True)
+
+                    return ERROR
+                except PreviousBuildDirError as exc:
+                    logger.critical(str(exc))
+                    logger.debug("Exception information:", exc_info=True)
+
+                    return PREVIOUS_BUILD_DIR_ERROR
+                except (
+                    InstallationError,
+                    UninstallationError,
+                    BadCommand,
+                    NetworkConnectionError,
+                ) as exc:
+                    logger.critical(str(exc))
+                    logger.debug("Exception information:", exc_info=True)
+
+                    return ERROR
+                except CommandError as exc:
+                    logger.critical("%s", exc)
+                    logger.debug("Exception information:", exc_info=True)
+
+                    return ERROR
+                except BrokenStdoutLoggingError:
+                    # Bypass our logger and write any remaining messages to
+                    # stderr because stdout no longer works.
+                    print("ERROR: Pipe to stdout was broken", file=sys.stderr)
+                    if level_number <= logging.DEBUG:
+                        traceback.print_exc(file=sys.stderr)
+
+                    return ERROR
+                except KeyboardInterrupt:
+                    logger.critical("Operation cancelled by user")
+                    logger.debug("Exception information:", exc_info=True)
+
+                    return ERROR
+                except BaseException:
+                    logger.critical("Exception:", exc_info=True)
+
+                    return UNKNOWN_ERROR
+
+            return exc_logging_wrapper
+
+        try:
+            if not options.debug_mode:
+                run = intercepts_unhandled_exc(self.run)
+            else:
+                run = self.run
+                rich_traceback.install(show_locals=True)
+            return run(options, args)
+        finally:
+            self.handle_pip_version_check(options)

galaxy/lib/python3.12/site-packages/pip/_internal/cli/command_context.py

@@ -0,0 +1,27 @@
+from contextlib import ExitStack, contextmanager
+from typing import ContextManager, Generator, TypeVar
+
+_T = TypeVar("_T", covariant=True)
+
+
+class CommandContextMixIn:
+    def __init__(self) -> None:
+        super().__init__()
+        self._in_main_context = False
+        self._main_context = ExitStack()
+
+    @contextmanager
+    def main_context(self) -> Generator[None, None, None]:
+        assert not self._in_main_context
+
+        self._in_main_context = True
+        try:
+            with self._main_context:
+                yield
+        finally:
+            self._in_main_context = False
+
+    def enter_context(self, context_provider: ContextManager[_T]) -> _T:
+        assert self._in_main_context
+
+        return self._main_context.enter_context(context_provider)

galaxy/lib/python3.12/site-packages/pip/_internal/cli/main.py

@@ -0,0 +1,79 @@
+"""Primary application entrypoint.
+"""
+import locale
+import logging
+import os
+import sys
+import warnings
+from typing import List, Optional
+
+from pip._internal.cli.autocompletion import autocomplete
+from pip._internal.cli.main_parser import parse_command
+from pip._internal.commands import create_command
+from pip._internal.exceptions import PipError
+from pip._internal.utils import deprecation
+
+logger = logging.getLogger(__name__)
+
+
+# Do not import and use main() directly! Using it directly is actively
+# discouraged by pip's maintainers. The name, location and behavior of
+# this function is subject to change, so calling it directly is not
+# portable across different pip versions.
+
+# In addition, running pip in-process is unsupported and unsafe. This is
+# elaborated in detail at
+# https://pip.pypa.io/en/stable/user_guide/#using-pip-from-your-program.
+# That document also provides suggestions that should work for nearly
+# all users that are considering importing and using main() directly.
+
+# However, we know that certain users will still want to invoke pip
+# in-process. If you understand and accept the implications of using pip
+# in an unsupported manner, the best approach is to use runpy to avoid
+# depending on the exact location of this entry point.
+
+# The following example shows how to use runpy to invoke pip in that
+# case:
+#
+#     sys.argv = ["pip", your, args, here]
+#     runpy.run_module("pip", run_name="__main__")
+#
+# Note that this will exit the process after running, unlike a direct
+# call to main. As it is not safe to do any processing after calling
+# main, this should not be an issue in practice.
+
+
+def main(args: Optional[List[str]] = None) -> int:
+    if args is None:
+        args = sys.argv[1:]
+
+    # Suppress the pkg_resources deprecation warning
+    # Note - we use a module of .*pkg_resources to cover
+    # the normal case (pip._vendor.pkg_resources) and the
+    # devendored case (a bare pkg_resources)
+    warnings.filterwarnings(
+        action="ignore", category=DeprecationWarning, module=".*pkg_resources"
+    )
+
+    # Configure our deprecation warnings to be sent through loggers
+    deprecation.install_warning_logger()
+
+    autocomplete()
+
+    try:
+        cmd_name, cmd_args = parse_command(args)
+    except PipError as exc:
+        sys.stderr.write(f"ERROR: {exc}")
+        sys.stderr.write(os.linesep)
+        sys.exit(1)
+
+    # Needed for locale.getpreferredencoding(False) to work
+    # in pip._internal.utils.encoding.auto_decode
+    try:
+        locale.setlocale(locale.LC_ALL, "")
+    except locale.Error as e:
+        # setlocale can apparently crash if locale are uninitialized
+        logger.debug("Ignoring error %s when setting locale", e)
+    command = create_command(cmd_name, isolated=("--isolated" in cmd_args))
+
+    return command.main(cmd_args)

galaxy/lib/python3.12/site-packages/pip/_internal/cli/main_parser.py

@@ -0,0 +1,134 @@
+"""A single place for constructing and exposing the main parser
+"""
+
+import os
+import subprocess
+import sys
+from typing import List, Optional, Tuple
+
+from pip._internal.build_env import get_runnable_pip
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.parser import ConfigOptionParser, UpdatingDefaultsHelpFormatter
+from pip._internal.commands import commands_dict, get_similar_commands
+from pip._internal.exceptions import CommandError
+from pip._internal.utils.misc import get_pip_version, get_prog
+
+__all__ = ["create_main_parser", "parse_command"]
+
+
+def create_main_parser() -> ConfigOptionParser:
+    """Creates and returns the main parser for pip's CLI"""
+
+    parser = ConfigOptionParser(
+        usage="\n%prog <command> [options]",
+        add_help_option=False,
+        formatter=UpdatingDefaultsHelpFormatter(),
+        name="global",
+        prog=get_prog(),
+    )
+    parser.disable_interspersed_args()
+
+    parser.version = get_pip_version()
+
+    # add the general options
+    gen_opts = cmdoptions.make_option_group(cmdoptions.general_group, parser)
+    parser.add_option_group(gen_opts)
+
+    # so the help formatter knows
+    parser.main = True  # type: ignore
+
+    # create command listing for description
+    description = [""] + [
+        f"{name:27} {command_info.summary}"
+        for name, command_info in commands_dict.items()
+    ]
+    parser.description = "\n".join(description)
+
+    return parser
+
+
+def identify_python_interpreter(python: str) -> Optional[str]:
+    # If the named file exists, use it.
+    # If it's a directory, assume it's a virtual environment and
+    # look for the environment's Python executable.
+    if os.path.exists(python):
+        if os.path.isdir(python):
+            # bin/python for Unix, Scripts/python.exe for Windows
+            # Try both in case of odd cases like cygwin.
+            for exe in ("bin/python", "Scripts/python.exe"):
+                py = os.path.join(python, exe)
+                if os.path.exists(py):
+                    return py
+        else:
+            return python
+
+    # Could not find the interpreter specified
+    return None
+
+
+def parse_command(args: List[str]) -> Tuple[str, List[str]]:
+    parser = create_main_parser()
+
+    # Note: parser calls disable_interspersed_args(), so the result of this
+    # call is to split the initial args into the general options before the
+    # subcommand and everything else.
+    # For example:
+    #  args: ['--timeout=5', 'install', '--user', 'INITools']
+    #  general_options: ['--timeout==5']
+    #  args_else: ['install', '--user', 'INITools']
+    general_options, args_else = parser.parse_args(args)
+
+    # --python
+    if general_options.python and "_PIP_RUNNING_IN_SUBPROCESS" not in os.environ:
+        # Re-invoke pip using the specified Python interpreter
+        interpreter = identify_python_interpreter(general_options.python)
+        if interpreter is None:
+            raise CommandError(
+                f"Could not locate Python interpreter {general_options.python}"
+            )
+
+        pip_cmd = [
+            interpreter,
+            get_runnable_pip(),
+        ]
+        pip_cmd.extend(args)
+
+        # Set a flag so the child doesn't re-invoke itself, causing
+        # an infinite loop.
+        os.environ["_PIP_RUNNING_IN_SUBPROCESS"] = "1"
+        returncode = 0
+        try:
+            proc = subprocess.run(pip_cmd)
+            returncode = proc.returncode
+        except (subprocess.SubprocessError, OSError) as exc:
+            raise CommandError(f"Failed to run pip under {interpreter}: {exc}")
+        sys.exit(returncode)
+
+    # --version
+    if general_options.version:
+        sys.stdout.write(parser.version)
+        sys.stdout.write(os.linesep)
+        sys.exit()
+
+    # pip || pip help -> print_help()
+    if not args_else or (args_else[0] == "help" and len(args_else) == 1):
+        parser.print_help()
+        sys.exit()
+
+    # the subcommand name
+    cmd_name = args_else[0]
+
+    if cmd_name not in commands_dict:
+        guess = get_similar_commands(cmd_name)
+
+        msg = [f'unknown command "{cmd_name}"']
+        if guess:
+            msg.append(f'maybe you meant "{guess}"')
+
+        raise CommandError(" - ".join(msg))
+
+    # all the args without the subcommand
+    cmd_args = args[:]
+    cmd_args.remove(cmd_name)
+
+    return cmd_name, cmd_args

galaxy/lib/python3.12/site-packages/pip/_internal/cli/parser.py

@@ -0,0 +1,294 @@
+"""Base option parser setup"""
+
+import logging
+import optparse
+import shutil
+import sys
+import textwrap
+from contextlib import suppress
+from typing import Any, Dict, Generator, List, Tuple
+
+from pip._internal.cli.status_codes import UNKNOWN_ERROR
+from pip._internal.configuration import Configuration, ConfigurationError
+from pip._internal.utils.misc import redact_auth_from_url, strtobool
+
+logger = logging.getLogger(__name__)
+
+
+class PrettyHelpFormatter(optparse.IndentedHelpFormatter):
+    """A prettier/less verbose help formatter for optparse."""
+
+    def __init__(self, *args: Any, **kwargs: Any) -> None:
+        # help position must be aligned with __init__.parseopts.description
+        kwargs["max_help_position"] = 30
+        kwargs["indent_increment"] = 1
+        kwargs["width"] = shutil.get_terminal_size()[0] - 2
+        super().__init__(*args, **kwargs)
+
+    def format_option_strings(self, option: optparse.Option) -> str:
+        return self._format_option_strings(option)
+
+    def _format_option_strings(
+        self, option: optparse.Option, mvarfmt: str = " <{}>", optsep: str = ", "
+    ) -> str:
+        """
+        Return a comma-separated list of option strings and metavars.
+
+        :param option:  tuple of (short opt, long opt), e.g: ('-f', '--format')
+        :param mvarfmt: metavar format string
+        :param optsep:  separator
+        """
+        opts = []
+
+        if option._short_opts:
+            opts.append(option._short_opts[0])
+        if option._long_opts:
+            opts.append(option._long_opts[0])
+        if len(opts) > 1:
+            opts.insert(1, optsep)
+
+        if option.takes_value():
+            assert option.dest is not None
+            metavar = option.metavar or option.dest.lower()
+            opts.append(mvarfmt.format(metavar.lower()))
+
+        return "".join(opts)
+
+    def format_heading(self, heading: str) -> str:
+        if heading == "Options":
+            return ""
+        return heading + ":\n"
+
+    def format_usage(self, usage: str) -> str:
+        """
+        Ensure there is only one newline between usage and the first heading
+        if there is no description.
+        """
+        msg = "\nUsage: {}\n".format(self.indent_lines(textwrap.dedent(usage), "  "))
+        return msg
+
+    def format_description(self, description: str) -> str:
+        # leave full control over description to us
+        if description:
+            if hasattr(self.parser, "main"):
+                label = "Commands"
+            else:
+                label = "Description"
+            # some doc strings have initial newlines, some don't
+            description = description.lstrip("\n")
+            # some doc strings have final newlines and spaces, some don't
+            description = description.rstrip()
+            # dedent, then reindent
+            description = self.indent_lines(textwrap.dedent(description), "  ")
+            description = f"{label}:\n{description}\n"
+            return description
+        else:
+            return ""
+
+    def format_epilog(self, epilog: str) -> str:
+        # leave full control over epilog to us
+        if epilog:
+            return epilog
+        else:
+            return ""
+
+    def indent_lines(self, text: str, indent: str) -> str:
+        new_lines = [indent + line for line in text.split("\n")]
+        return "\n".join(new_lines)
+
+
+class UpdatingDefaultsHelpFormatter(PrettyHelpFormatter):
+    """Custom help formatter for use in ConfigOptionParser.
+
+    This is updates the defaults before expanding them, allowing
+    them to show up correctly in the help listing.
+
+    Also redact auth from url type options
+    """
+
+    def expand_default(self, option: optparse.Option) -> str:
+        default_values = None
+        if self.parser is not None:
+            assert isinstance(self.parser, ConfigOptionParser)
+            self.parser._update_defaults(self.parser.defaults)
+            assert option.dest is not None
+            default_values = self.parser.defaults.get(option.dest)
+        help_text = super().expand_default(option)
+
+        if default_values and option.metavar == "URL":
+            if isinstance(default_values, str):
+                default_values = [default_values]
+
+            # If its not a list, we should abort and just return the help text
+            if not isinstance(default_values, list):
+                default_values = []
+
+            for val in default_values:
+                help_text = help_text.replace(val, redact_auth_from_url(val))
+
+        return help_text
+
+
+class CustomOptionParser(optparse.OptionParser):
+    def insert_option_group(
+        self, idx: int, *args: Any, **kwargs: Any
+    ) -> optparse.OptionGroup:
+        """Insert an OptionGroup at a given position."""
+        group = self.add_option_group(*args, **kwargs)
+
+        self.option_groups.pop()
+        self.option_groups.insert(idx, group)
+
+        return group
+
+    @property
+    def option_list_all(self) -> List[optparse.Option]:
+        """Get a list of all options, including those in option groups."""
+        res = self.option_list[:]
+        for i in self.option_groups:
+            res.extend(i.option_list)
+
+        return res
+
+
+class ConfigOptionParser(CustomOptionParser):
+    """Custom option parser which updates its defaults by checking the
+    configuration files and environmental variables"""
+
+    def __init__(
+        self,
+        *args: Any,
+        name: str,
+        isolated: bool = False,
+        **kwargs: Any,
+    ) -> None:
+        self.name = name
+        self.config = Configuration(isolated)
+
+        assert self.name
+        super().__init__(*args, **kwargs)
+
+    def check_default(self, option: optparse.Option, key: str, val: Any) -> Any:
+        try:
+            return option.check_value(key, val)
+        except optparse.OptionValueError as exc:
+            print(f"An error occurred during configuration: {exc}")
+            sys.exit(3)
+
+    def _get_ordered_configuration_items(
+        self,
+    ) -> Generator[Tuple[str, Any], None, None]:
+        # Configuration gives keys in an unordered manner. Order them.
+        override_order = ["global", self.name, ":env:"]
+
+        # Pool the options into different groups
+        section_items: Dict[str, List[Tuple[str, Any]]] = {
+            name: [] for name in override_order
+        }
+        for section_key, val in self.config.items():
+            # ignore empty values
+            if not val:
+                logger.debug(
+                    "Ignoring configuration key '%s' as it's value is empty.",
+                    section_key,
+                )
+                continue
+
+            section, key = section_key.split(".", 1)
+            if section in override_order:
+                section_items[section].append((key, val))
+
+        # Yield each group in their override order
+        for section in override_order:
+            for key, val in section_items[section]:
+                yield key, val
+
+    def _update_defaults(self, defaults: Dict[str, Any]) -> Dict[str, Any]:
+        """Updates the given defaults with values from the config files and
+        the environ. Does a little special handling for certain types of
+        options (lists)."""
+
+        # Accumulate complex default state.
+        self.values = optparse.Values(self.defaults)
+        late_eval = set()
+        # Then set the options with those values
+        for key, val in self._get_ordered_configuration_items():
+            # '--' because configuration supports only long names
+            option = self.get_option("--" + key)
+
+            # Ignore options not present in this parser. E.g. non-globals put
+            # in [global] by users that want them to apply to all applicable
+            # commands.
+            if option is None:
+                continue
+
+            assert option.dest is not None
+
+            if option.action in ("store_true", "store_false"):
+                try:
+                    val = strtobool(val)
+                except ValueError:
+                    self.error(
+                        f"{val} is not a valid value for {key} option, "
+                        "please specify a boolean value like yes/no, "
+                        "true/false or 1/0 instead."
+                    )
+            elif option.action == "count":
+                with suppress(ValueError):
+                    val = strtobool(val)
+                with suppress(ValueError):
+                    val = int(val)
+                if not isinstance(val, int) or val < 0:
+                    self.error(
+                        f"{val} is not a valid value for {key} option, "
+                        "please instead specify either a non-negative integer "
+                        "or a boolean value like yes/no or false/true "
+                        "which is equivalent to 1/0."
+                    )
+            elif option.action == "append":
+                val = val.split()
+                val = [self.check_default(option, key, v) for v in val]
+            elif option.action == "callback":
+                assert option.callback is not None
+                late_eval.add(option.dest)
+                opt_str = option.get_opt_string()
+                val = option.convert_value(opt_str, val)
+                # From take_action
+                args = option.callback_args or ()
+                kwargs = option.callback_kwargs or {}
+                option.callback(option, opt_str, val, self, *args, **kwargs)
+            else:
+                val = self.check_default(option, key, val)
+
+            defaults[option.dest] = val
+
+        for key in late_eval:
+            defaults[key] = getattr(self.values, key)
+        self.values = None
+        return defaults
+
+    def get_default_values(self) -> optparse.Values:
+        """Overriding to make updating the defaults after instantiation of
+        the option parser possible, _update_defaults() does the dirty work."""
+        if not self.process_default_values:
+            # Old, pre-Optik 1.5 behaviour.
+            return optparse.Values(self.defaults)
+
+        # Load the configuration, or error out in case of an error
+        try:
+            self.config.load()
+        except ConfigurationError as err:
+            self.exit(UNKNOWN_ERROR, str(err))
+
+        defaults = self._update_defaults(self.defaults.copy())  # ours
+        for option in self._get_all_options():
+            assert option.dest is not None
+            default = defaults.get(option.dest)
+            if isinstance(default, str):
+                opt_str = option.get_opt_string()
+                defaults[option.dest] = option.check_value(opt_str, default)
+        return optparse.Values(defaults)
+
+    def error(self, msg: str) -> None:
+        self.print_usage(sys.stderr)
+        self.exit(UNKNOWN_ERROR, f"{msg}\n")

galaxy/lib/python3.12/site-packages/pip/_internal/cli/progress_bars.py

@@ -0,0 +1,68 @@
+import functools
+from typing import Callable, Generator, Iterable, Iterator, Optional, Tuple
+
+from pip._vendor.rich.progress import (
+    BarColumn,
+    DownloadColumn,
+    FileSizeColumn,
+    Progress,
+    ProgressColumn,
+    SpinnerColumn,
+    TextColumn,
+    TimeElapsedColumn,
+    TimeRemainingColumn,
+    TransferSpeedColumn,
+)
+
+from pip._internal.utils.logging import get_indentation
+
+DownloadProgressRenderer = Callable[[Iterable[bytes]], Iterator[bytes]]
+
+
+def _rich_progress_bar(
+    iterable: Iterable[bytes],
+    *,
+    bar_type: str,
+    size: int,
+) -> Generator[bytes, None, None]:
+    assert bar_type == "on", "This should only be used in the default mode."
+
+    if not size:
+        total = float("inf")
+        columns: Tuple[ProgressColumn, ...] = (
+            TextColumn("[progress.description]{task.description}"),
+            SpinnerColumn("line", speed=1.5),
+            FileSizeColumn(),
+            TransferSpeedColumn(),
+            TimeElapsedColumn(),
+        )
+    else:
+        total = size
+        columns = (
+            TextColumn("[progress.description]{task.description}"),
+            BarColumn(),
+            DownloadColumn(),
+            TransferSpeedColumn(),
+            TextColumn("eta"),
+            TimeRemainingColumn(),
+        )
+
+    progress = Progress(*columns, refresh_per_second=30)
+    task_id = progress.add_task(" " * (get_indentation() + 2), total=total)
+    with progress:
+        for chunk in iterable:
+            yield chunk
+            progress.update(task_id, advance=len(chunk))
+
+
+def get_download_progress_renderer(
+    *, bar_type: str, size: Optional[int] = None
+) -> DownloadProgressRenderer:
+    """Get an object that can be used to render the download progress.
+
+    Returns a callable, that takes an iterable to "wrap".
+    """
+    if bar_type == "on":
+        return functools.partial(_rich_progress_bar, bar_type=bar_type, size=size)
+    else:
+        return iter  # no-op, when passed an iterator

galaxy/lib/python3.12/site-packages/pip/_internal/cli/req_command.py

@@ -0,0 +1,505 @@
+"""Contains the Command base classes that depend on PipSession.
+
+The classes in this module are in a separate module so the commands not
+needing download / PackageFinder capability don't unnecessarily import the
+PackageFinder machinery and all its vendored dependencies, etc.
+"""
+
+import logging
+import os
+import sys
+from functools import partial
+from optparse import Values
+from typing import TYPE_CHECKING, Any, List, Optional, Tuple
+
+from pip._internal.cache import WheelCache
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.command_context import CommandContextMixIn
+from pip._internal.exceptions import CommandError, PreviousBuildDirError
+from pip._internal.index.collector import LinkCollector
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.models.selection_prefs import SelectionPreferences
+from pip._internal.models.target_python import TargetPython
+from pip._internal.network.session import PipSession
+from pip._internal.operations.build.build_tracker import BuildTracker
+from pip._internal.operations.prepare import RequirementPreparer
+from pip._internal.req.constructors import (
+    install_req_from_editable,
+    install_req_from_line,
+    install_req_from_parsed_requirement,
+    install_req_from_req_string,
+)
+from pip._internal.req.req_file import parse_requirements
+from pip._internal.req.req_install import InstallRequirement
+from pip._internal.resolution.base import BaseResolver
+from pip._internal.self_outdated_check import pip_self_version_check
+from pip._internal.utils.temp_dir import (
+    TempDirectory,
+    TempDirectoryTypeRegistry,
+    tempdir_kinds,
+)
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+if TYPE_CHECKING:
+    from ssl import SSLContext
+
+logger = logging.getLogger(__name__)
+
+
+def _create_truststore_ssl_context() -> Optional["SSLContext"]:
+    if sys.version_info < (3, 10):
+        raise CommandError("The truststore feature is only available for Python 3.10+")
+
+    try:
+        import ssl
+    except ImportError:
+        logger.warning("Disabling truststore since ssl support is missing")
+        return None
+
+    try:
+        from pip._vendor import truststore
+    except ImportError as e:
+        raise CommandError(f"The truststore feature is unavailable: {e}")
+
+    return truststore.SSLContext(ssl.PROTOCOL_TLS_CLIENT)
+
+
+class SessionCommandMixin(CommandContextMixIn):
+
+    """
+    A class mixin for command classes needing _build_session().
+    """
+
+    def __init__(self) -> None:
+        super().__init__()
+        self._session: Optional[PipSession] = None
+
+    @classmethod
+    def _get_index_urls(cls, options: Values) -> Optional[List[str]]:
+        """Return a list of index urls from user-provided options."""
+        index_urls = []
+        if not getattr(options, "no_index", False):
+            url = getattr(options, "index_url", None)
+            if url:
+                index_urls.append(url)
+        urls = getattr(options, "extra_index_urls", None)
+        if urls:
+            index_urls.extend(urls)
+        # Return None rather than an empty list
+        return index_urls or None
+
+    def get_default_session(self, options: Values) -> PipSession:
+        """Get a default-managed session."""
+        if self._session is None:
+            self._session = self.enter_context(self._build_session(options))
+            # there's no type annotation on requests.Session, so it's
+            # automatically ContextManager[Any] and self._session becomes Any,
+            # then https://github.com/python/mypy/issues/7696 kicks in
+            assert self._session is not None
+        return self._session
+
+    def _build_session(
+        self,
+        options: Values,
+        retries: Optional[int] = None,
+        timeout: Optional[int] = None,
+        fallback_to_certifi: bool = False,
+    ) -> PipSession:
+        cache_dir = options.cache_dir
+        assert not cache_dir or os.path.isabs(cache_dir)
+
+        if "truststore" in options.features_enabled:
+            try:
+                ssl_context = _create_truststore_ssl_context()
+            except Exception:
+                if not fallback_to_certifi:
+                    raise
+                ssl_context = None
+        else:
+            ssl_context = None
+
+        session = PipSession(
+            cache=os.path.join(cache_dir, "http-v2") if cache_dir else None,
+            retries=retries if retries is not None else options.retries,
+            trusted_hosts=options.trusted_hosts,
+            index_urls=self._get_index_urls(options),
+            ssl_context=ssl_context,
+        )
+
+        # Handle custom ca-bundles from the user
+        if options.cert:
+            session.verify = options.cert
+
+        # Handle SSL client certificate
+        if options.client_cert:
+            session.cert = options.client_cert
+
+        # Handle timeouts
+        if options.timeout or timeout:
+            session.timeout = timeout if timeout is not None else options.timeout
+
+        # Handle configured proxies
+        if options.proxy:
+            session.proxies = {
+                "http": options.proxy,
+                "https": options.proxy,
+            }
+
+        # Determine if we can prompt the user for authentication or not
+        session.auth.prompting = not options.no_input
+        session.auth.keyring_provider = options.keyring_provider
+
+        return session
+
+
+class IndexGroupCommand(Command, SessionCommandMixin):
+
+    """
+    Abstract base class for commands with the index_group options.
+
+    This also corresponds to the commands that permit the pip version check.
+    """
+
+    def handle_pip_version_check(self, options: Values) -> None:
+        """
+        Do the pip version check if not disabled.
+
+        This overrides the default behavior of not doing the check.
+        """
+        # Make sure the index_group options are present.
+        assert hasattr(options, "no_index")
+
+        if options.disable_pip_version_check or options.no_index:
+            return
+
+        # Otherwise, check if we're using the latest version of pip available.
+        session = self._build_session(
+            options,
+            retries=0,
+            timeout=min(5, options.timeout),
+            # This is set to ensure the function does not fail when truststore is
+            # specified in use-feature but cannot be loaded. This usually raises a
+            # CommandError and shows a nice user-facing error, but this function is not
+            # called in that try-except block.
+            fallback_to_certifi=True,
+        )
+        with session:
+            pip_self_version_check(session, options)
+
+
+KEEPABLE_TEMPDIR_TYPES = [
+    tempdir_kinds.BUILD_ENV,
+    tempdir_kinds.EPHEM_WHEEL_CACHE,
+    tempdir_kinds.REQ_BUILD,
+]
+
+
+def warn_if_run_as_root() -> None:
+    """Output a warning for sudo users on Unix.
+
+    In a virtual environment, sudo pip still writes to virtualenv.
+    On Windows, users may run pip as Administrator without issues.
+    This warning only applies to Unix root users outside of virtualenv.
+    """
+    if running_under_virtualenv():
+        return
+    if not hasattr(os, "getuid"):
+        return
+    # On Windows, there are no "system managed" Python packages. Installing as
+    # Administrator via pip is the correct way of updating system environments.
+    #
+    # We choose sys.platform over utils.compat.WINDOWS here to enable Mypy platform
+    # checks: https://mypy.readthedocs.io/en/stable/common_issues.html
+    if sys.platform == "win32" or sys.platform == "cygwin":
+        return
+
+    if os.getuid() != 0:
+        return
+
+    logger.warning(
+        "Running pip as the 'root' user can result in broken permissions and "
+        "conflicting behaviour with the system package manager. "
+        "It is recommended to use a virtual environment instead: "
+        "https://pip.pypa.io/warnings/venv"
+    )
+
+
+def with_cleanup(func: Any) -> Any:
+    """Decorator for common logic related to managing temporary
+    directories.
+    """
+
+    def configure_tempdir_registry(registry: TempDirectoryTypeRegistry) -> None:
+        for t in KEEPABLE_TEMPDIR_TYPES:
+            registry.set_delete(t, False)
+
+    def wrapper(
+        self: RequirementCommand, options: Values, args: List[Any]
+    ) -> Optional[int]:
+        assert self.tempdir_registry is not None
+        if options.no_clean:
+            configure_tempdir_registry(self.tempdir_registry)
+
+        try:
+            return func(self, options, args)
+        except PreviousBuildDirError:
+            # This kind of conflict can occur when the user passes an explicit
+            # build directory with a pre-existing folder. In that case we do
+            # not want to accidentally remove it.
+            configure_tempdir_registry(self.tempdir_registry)
+            raise
+
+    return wrapper
+
+
+class RequirementCommand(IndexGroupCommand):
+    def __init__(self, *args: Any, **kw: Any) -> None:
+        super().__init__(*args, **kw)
+
+        self.cmd_opts.add_option(cmdoptions.no_clean())
+
+    @staticmethod
+    def determine_resolver_variant(options: Values) -> str:
+        """Determines which resolver should be used, based on the given options."""
+        if "legacy-resolver" in options.deprecated_features_enabled:
+            return "legacy"
+
+        return "resolvelib"
+
+    @classmethod
+    def make_requirement_preparer(
+        cls,
+        temp_build_dir: TempDirectory,
+        options: Values,
+        build_tracker: BuildTracker,
+        session: PipSession,
+        finder: PackageFinder,
+        use_user_site: bool,
+        download_dir: Optional[str] = None,
+        verbosity: int = 0,
+    ) -> RequirementPreparer:
+        """
+        Create a RequirementPreparer instance for the given parameters.
+        """
+        temp_build_dir_path = temp_build_dir.path
+        assert temp_build_dir_path is not None
+        legacy_resolver = False
+
+        resolver_variant = cls.determine_resolver_variant(options)
+        if resolver_variant == "resolvelib":
+            lazy_wheel = "fast-deps" in options.features_enabled
+            if lazy_wheel:
+                logger.warning(
+                    "pip is using lazily downloaded wheels using HTTP "
+                    "range requests to obtain dependency information. "
+                    "This experimental feature is enabled through "
+                    "--use-feature=fast-deps and it is not ready for "
+                    "production."
+                )
+        else:
+            legacy_resolver = True
+            lazy_wheel = False
+            if "fast-deps" in options.features_enabled:
+                logger.warning(
+                    "fast-deps has no effect when used with the legacy resolver."
+                )
+
+        return RequirementPreparer(
+            build_dir=temp_build_dir_path,
+            src_dir=options.src_dir,
+            download_dir=download_dir,
+            build_isolation=options.build_isolation,
+            check_build_deps=options.check_build_deps,
+            build_tracker=build_tracker,
+            session=session,
+            progress_bar=options.progress_bar,
+            finder=finder,
+            require_hashes=options.require_hashes,
+            use_user_site=use_user_site,
+            lazy_wheel=lazy_wheel,
+            verbosity=verbosity,
+            legacy_resolver=legacy_resolver,
+        )
+
+    @classmethod
+    def make_resolver(
+        cls,
+        preparer: RequirementPreparer,
+        finder: PackageFinder,
+        options: Values,
+        wheel_cache: Optional[WheelCache] = None,
+        use_user_site: bool = False,
+        ignore_installed: bool = True,
+        ignore_requires_python: bool = False,
+        force_reinstall: bool = False,
+        upgrade_strategy: str = "to-satisfy-only",
+        use_pep517: Optional[bool] = None,
+        py_version_info: Optional[Tuple[int, ...]] = None,
+    ) -> BaseResolver:
+        """
+        Create a Resolver instance for the given parameters.
+        """
+        make_install_req = partial(
+            install_req_from_req_string,
+            isolated=options.isolated_mode,
+            use_pep517=use_pep517,
+        )
+        resolver_variant = cls.determine_resolver_variant(options)
+        # The long import name and duplicated invocation is needed to convince
+        # Mypy into correctly typechecking. Otherwise it would complain the
+        # "Resolver" class being redefined.
+        if resolver_variant == "resolvelib":
+            import pip._internal.resolution.resolvelib.resolver
+
+            return pip._internal.resolution.resolvelib.resolver.Resolver(
+                preparer=preparer,
+                finder=finder,
+                wheel_cache=wheel_cache,
+                make_install_req=make_install_req,
+                use_user_site=use_user_site,
+                ignore_dependencies=options.ignore_dependencies,
+                ignore_installed=ignore_installed,
+                ignore_requires_python=ignore_requires_python,
+                force_reinstall=force_reinstall,
+                upgrade_strategy=upgrade_strategy,
+                py_version_info=py_version_info,
+            )
+        import pip._internal.resolution.legacy.resolver
+
+        return pip._internal.resolution.legacy.resolver.Resolver(
+            preparer=preparer,
+            finder=finder,
+            wheel_cache=wheel_cache,
+            make_install_req=make_install_req,
+            use_user_site=use_user_site,
+            ignore_dependencies=options.ignore_dependencies,
+            ignore_installed=ignore_installed,
+            ignore_requires_python=ignore_requires_python,
+            force_reinstall=force_reinstall,
+            upgrade_strategy=upgrade_strategy,
+            py_version_info=py_version_info,
+        )
+
+    def get_requirements(
+        self,
+        args: List[str],
+        options: Values,
+        finder: PackageFinder,
+        session: PipSession,
+    ) -> List[InstallRequirement]:
+        """
+        Parse command-line arguments into the corresponding requirements.
+        """
+        requirements: List[InstallRequirement] = []
+        for filename in options.constraints:
+            for parsed_req in parse_requirements(
+                filename,
+                constraint=True,
+                finder=finder,
+                options=options,
+                session=session,
+            ):
+                req_to_add = install_req_from_parsed_requirement(
+                    parsed_req,
+                    isolated=options.isolated_mode,
+                    user_supplied=False,
+                )
+                requirements.append(req_to_add)
+
+        for req in args:
+            req_to_add = install_req_from_line(
+                req,
+                comes_from=None,
+                isolated=options.isolated_mode,
+                use_pep517=options.use_pep517,
+                user_supplied=True,
+                config_settings=getattr(options, "config_settings", None),
+            )
+            requirements.append(req_to_add)
+
+        for req in options.editables:
+            req_to_add = install_req_from_editable(
+                req,
+                user_supplied=True,
+                isolated=options.isolated_mode,
+                use_pep517=options.use_pep517,
+                config_settings=getattr(options, "config_settings", None),
+            )
+            requirements.append(req_to_add)
+
+        # NOTE: options.require_hashes may be set if --require-hashes is True
+        for filename in options.requirements:
+            for parsed_req in parse_requirements(
+                filename, finder=finder, options=options, session=session
+            ):
+                req_to_add = install_req_from_parsed_requirement(
+                    parsed_req,
+                    isolated=options.isolated_mode,
+                    use_pep517=options.use_pep517,
+                    user_supplied=True,
+                    config_settings=parsed_req.options.get("config_settings")
+                    if parsed_req.options
+                    else None,
+                )
+                requirements.append(req_to_add)
+
+        # If any requirement has hash options, enable hash checking.
+        if any(req.has_hash_options for req in requirements):
+            options.require_hashes = True
+
+        if not (args or options.editables or options.requirements):
+            opts = {"name": self.name}
+            if options.find_links:
+                raise CommandError(
+                    "You must give at least one requirement to {name} "
+                    '(maybe you meant "pip {name} {links}"?)'.format(
+                        **dict(opts, links=" ".join(options.find_links))
+                    )
+                )
+            else:
+                raise CommandError(
+                    "You must give at least one requirement to {name} "
+                    '(see "pip help {name}")'.format(**opts)
+                )
+
+        return requirements
+
+    @staticmethod
+    def trace_basic_info(finder: PackageFinder) -> None:
+        """
+        Trace basic information about the provided objects.
+        """
+        # Display where finder is looking for packages
+        search_scope = finder.search_scope
+        locations = search_scope.get_formatted_locations()
+        if locations:
+            logger.info(locations)
+
+    def _build_package_finder(
+        self,
+        options: Values,
+        session: PipSession,
+        target_python: Optional[TargetPython] = None,
+        ignore_requires_python: Optional[bool] = None,
+    ) -> PackageFinder:
+        """
+        Create a package finder appropriate to this requirement command.
+
+        :param ignore_requires_python: Whether to ignore incompatible
+            "Requires-Python" values in links. Defaults to False.
+        """
+        link_collector = LinkCollector.create(session, options=options)
+        selection_prefs = SelectionPreferences(
+            allow_yanked=True,
+            format_control=options.format_control,
+            allow_all_prereleases=options.pre,
+            prefer_binary=options.prefer_binary,
+            ignore_requires_python=ignore_requires_python,
+        )
+
+        return PackageFinder.create(
+            link_collector=link_collector,
+            selection_prefs=selection_prefs,
+            target_python=target_python,
+        )

galaxy/lib/python3.12/site-packages/pip/_internal/cli/spinners.py

@@ -0,0 +1,159 @@
+import contextlib
+import itertools
+import logging
+import sys
+import time
+from typing import IO, Generator, Optional
+
+from pip._internal.utils.compat import WINDOWS
+from pip._internal.utils.logging import get_indentation
+
+logger = logging.getLogger(__name__)
+
+
+class SpinnerInterface:
+    def spin(self) -> None:
+        raise NotImplementedError()
+
+    def finish(self, final_status: str) -> None:
+        raise NotImplementedError()
+
+
+class InteractiveSpinner(SpinnerInterface):
+    def __init__(
+        self,
+        message: str,
+        file: Optional[IO[str]] = None,
+        spin_chars: str = "-\\|/",
+        # Empirically, 8 updates/second looks nice
+        min_update_interval_seconds: float = 0.125,
+    ):
+        self._message = message
+        if file is None:
+            file = sys.stdout
+        self._file = file
+        self._rate_limiter = RateLimiter(min_update_interval_seconds)
+        self._finished = False
+
+        self._spin_cycle = itertools.cycle(spin_chars)
+
+        self._file.write(" " * get_indentation() + self._message + " ... ")
+        self._width = 0
+
+    def _write(self, status: str) -> None:
+        assert not self._finished
+        # Erase what we wrote before by backspacing to the beginning, writing
+        # spaces to overwrite the old text, and then backspacing again
+        backup = "\b" * self._width
+        self._file.write(backup + " " * self._width + backup)
+        # Now we have a blank slate to add our status
+        self._file.write(status)
+        self._width = len(status)
+        self._file.flush()
+        self._rate_limiter.reset()
+
+    def spin(self) -> None:
+        if self._finished:
+            return
+        if not self._rate_limiter.ready():
+            return
+        self._write(next(self._spin_cycle))
+
+    def finish(self, final_status: str) -> None:
+        if self._finished:
+            return
+        self._write(final_status)
+        self._file.write("\n")
+        self._file.flush()
+        self._finished = True
+
+
+# Used for dumb terminals, non-interactive installs (no tty), etc.
+# We still print updates occasionally (once every 60 seconds by default) to
+# act as a keep-alive for systems like Travis-CI that take lack-of-output as
+# an indication that a task has frozen.
+class NonInteractiveSpinner(SpinnerInterface):
+    def __init__(self, message: str, min_update_interval_seconds: float = 60.0) -> None:
+        self._message = message
+        self._finished = False
+        self._rate_limiter = RateLimiter(min_update_interval_seconds)
+        self._update("started")
+
+    def _update(self, status: str) -> None:
+        assert not self._finished
+        self._rate_limiter.reset()
+        logger.info("%s: %s", self._message, status)
+
+    def spin(self) -> None:
+        if self._finished:
+            return
+        if not self._rate_limiter.ready():
+            return
+        self._update("still running...")
+
+    def finish(self, final_status: str) -> None:
+        if self._finished:
+            return
+        self._update(f"finished with status '{final_status}'")
+        self._finished = True
+
+
+class RateLimiter:
+    def __init__(self, min_update_interval_seconds: float) -> None:
+        self._min_update_interval_seconds = min_update_interval_seconds
+        self._last_update: float = 0
+
+    def ready(self) -> bool:
+        now = time.time()
+        delta = now - self._last_update
+        return delta >= self._min_update_interval_seconds
+
+    def reset(self) -> None:
+        self._last_update = time.time()
+
+
+@contextlib.contextmanager
+def open_spinner(message: str) -> Generator[SpinnerInterface, None, None]:
+    # Interactive spinner goes directly to sys.stdout rather than being routed
+    # through the logging system, but it acts like it has level INFO,
+    # i.e. it's only displayed if we're at level INFO or better.
+    # Non-interactive spinner goes through the logging system, so it is always
+    # in sync with logging configuration.
+    if sys.stdout.isatty() and logger.getEffectiveLevel() <= logging.INFO:
+        spinner: SpinnerInterface = InteractiveSpinner(message)
+    else:
+        spinner = NonInteractiveSpinner(message)
+    try:
+        with hidden_cursor(sys.stdout):
+            yield spinner
+    except KeyboardInterrupt:
+        spinner.finish("canceled")
+        raise
+    except Exception:
+        spinner.finish("error")
+        raise
+    else:
+        spinner.finish("done")
+
+
+HIDE_CURSOR = "\x1b[?25l"
+SHOW_CURSOR = "\x1b[?25h"
+
+
+@contextlib.contextmanager
+def hidden_cursor(file: IO[str]) -> Generator[None, None, None]:
+    # The Windows terminal does not support the hide/show cursor ANSI codes,
+    # even via colorama. So don't even try.
+    if WINDOWS:
+        yield
+    # We don't want to clutter the output with control characters if we're
+    # writing to a file, or if the user is running with --quiet.
+    # See https://github.com/pypa/pip/issues/3418
+    elif not file.isatty() or logger.getEffectiveLevel() > logging.INFO:
+        yield
+    else:
+        file.write(HIDE_CURSOR)
+        try:
+            yield
+        finally:
+            file.write(SHOW_CURSOR)

galaxy/lib/python3.12/site-packages/pip/_internal/cli/status_codes.py

@@ -0,0 +1,6 @@
+SUCCESS = 0
+ERROR = 1
+UNKNOWN_ERROR = 2
+VIRTUALENV_NOT_FOUND = 3
+PREVIOUS_BUILD_DIR_ERROR = 4
+NO_MATCHES_FOUND = 23

galaxy/lib/python3.12/site-packages/pip/_internal/commands/__init__.py

@@ -0,0 +1,132 @@
+"""
+Package containing all pip commands
+"""
+
+import importlib
+from collections import namedtuple
+from typing import Any, Dict, Optional
+
+from pip._internal.cli.base_command import Command
+
+CommandInfo = namedtuple("CommandInfo", "module_path, class_name, summary")
+
+# This dictionary does a bunch of heavy lifting for help output:
+# - Enables avoiding additional (costly) imports for presenting `--help`.
+# - The ordering matters for help display.
+#
+# Even though the module path starts with the same "pip._internal.commands"
+# prefix, the full path makes testing easier (specifically when modifying
+# `commands_dict` in test setup / teardown).
+commands_dict: Dict[str, CommandInfo] = {
+    "install": CommandInfo(
+        "pip._internal.commands.install",
+        "InstallCommand",
+        "Install packages.",
+    ),
+    "download": CommandInfo(
+        "pip._internal.commands.download",
+        "DownloadCommand",
+        "Download packages.",
+    ),
+    "uninstall": CommandInfo(
+        "pip._internal.commands.uninstall",
+        "UninstallCommand",
+        "Uninstall packages.",
+    ),
+    "freeze": CommandInfo(
+        "pip._internal.commands.freeze",
+        "FreezeCommand",
+        "Output installed packages in requirements format.",
+    ),
+    "inspect": CommandInfo(
+        "pip._internal.commands.inspect",
+        "InspectCommand",
+        "Inspect the python environment.",
+    ),
+    "list": CommandInfo(
+        "pip._internal.commands.list",
+        "ListCommand",
+        "List installed packages.",
+    ),
+    "show": CommandInfo(
+        "pip._internal.commands.show",
+        "ShowCommand",
+        "Show information about installed packages.",
+    ),
+    "check": CommandInfo(
+        "pip._internal.commands.check",
+        "CheckCommand",
+        "Verify installed packages have compatible dependencies.",
+    ),
+    "config": CommandInfo(
+        "pip._internal.commands.configuration",
+        "ConfigurationCommand",
+        "Manage local and global configuration.",
+    ),
+    "search": CommandInfo(
+        "pip._internal.commands.search",
+        "SearchCommand",
+        "Search PyPI for packages.",
+    ),
+    "cache": CommandInfo(
+        "pip._internal.commands.cache",
+        "CacheCommand",
+        "Inspect and manage pip's wheel cache.",
+    ),
+    "index": CommandInfo(
+        "pip._internal.commands.index",
+        "IndexCommand",
+        "Inspect information available from package indexes.",
+    ),
+    "wheel": CommandInfo(
+        "pip._internal.commands.wheel",
+        "WheelCommand",
+        "Build wheels from your requirements.",
+    ),
+    "hash": CommandInfo(
+        "pip._internal.commands.hash",
+        "HashCommand",
+        "Compute hashes of package archives.",
+    ),
+    "completion": CommandInfo(
+        "pip._internal.commands.completion",
+        "CompletionCommand",
+        "A helper command used for command completion.",
+    ),
+    "debug": CommandInfo(
+        "pip._internal.commands.debug",
+        "DebugCommand",
+        "Show information useful for debugging.",
+    ),
+    "help": CommandInfo(
+        "pip._internal.commands.help",
+        "HelpCommand",
+        "Show help for commands.",
+    ),
+}
+
+
+def create_command(name: str, **kwargs: Any) -> Command:
+    """
+    Create an instance of the Command class with the given name.
+    """
+    module_path, class_name, summary = commands_dict[name]
+    module = importlib.import_module(module_path)
+    command_class = getattr(module, class_name)
+    command = command_class(name=name, summary=summary, **kwargs)
+
+    return command
+
+
+def get_similar_commands(name: str) -> Optional[str]:
+    """Command name auto-correct."""
+    from difflib import get_close_matches
+
+    name = name.lower()
+
+    close_commands = get_close_matches(name, commands_dict.keys())
+
+    if close_commands:
+        return close_commands[0]
+    else:
+        return None

galaxy/lib/python3.12/site-packages/pip/_internal/commands/cache.py

@@ -0,0 +1,225 @@
+import os
+import textwrap
+from optparse import Values
+from typing import Any, List
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.exceptions import CommandError, PipError
+from pip._internal.utils import filesystem
+from pip._internal.utils.logging import getLogger
+
+logger = getLogger(__name__)
+
+
+class CacheCommand(Command):
+    """
+    Inspect and manage pip's wheel cache.
+
+    Subcommands:
+
+    - dir: Show the cache directory.
+    - info: Show information about the cache.
+    - list: List filenames of packages stored in the cache.
+    - remove: Remove one or more package from the cache.
+    - purge: Remove all items from the cache.
+
+    ``<pattern>`` can be a glob expression or a package name.
+    """
+
+    ignore_require_venv = True
+    usage = """
+        %prog dir
+        %prog info
+        %prog list [<pattern>] [--format=[human, abspath]]
+        %prog remove <pattern>
+        %prog purge
+    """
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "--format",
+            action="store",
+            dest="list_format",
+            default="human",
+            choices=("human", "abspath"),
+            help="Select the output format among: human (default) or abspath",
+        )
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        handlers = {
+            "dir": self.get_cache_dir,
+            "info": self.get_cache_info,
+            "list": self.list_cache_items,
+            "remove": self.remove_cache_items,
+            "purge": self.purge_cache,
+        }
+
+        if not options.cache_dir:
+            logger.error("pip cache commands can not function since cache is disabled.")
+            return ERROR
+
+        # Determine action
+        if not args or args[0] not in handlers:
+            logger.error(
+                "Need an action (%s) to perform.",
+                ", ".join(sorted(handlers)),
+            )
+            return ERROR
+
+        action = args[0]
+
+        # Error handling happens here, not in the action-handlers.
+        try:
+            handlers[action](options, args[1:])
+        except PipError as e:
+            logger.error(e.args[0])
+            return ERROR
+
+        return SUCCESS
+
+    def get_cache_dir(self, options: Values, args: List[Any]) -> None:
+        if args:
+            raise CommandError("Too many arguments")
+
+        logger.info(options.cache_dir)
+
+    def get_cache_info(self, options: Values, args: List[Any]) -> None:
+        if args:
+            raise CommandError("Too many arguments")
+
+        num_http_files = len(self._find_http_files(options))
+        num_packages = len(self._find_wheels(options, "*"))
+
+        http_cache_location = self._cache_dir(options, "http-v2")
+        old_http_cache_location = self._cache_dir(options, "http")
+        wheels_cache_location = self._cache_dir(options, "wheels")
+        http_cache_size = filesystem.format_size(
+            filesystem.directory_size(http_cache_location)
+            + filesystem.directory_size(old_http_cache_location)
+        )
+        wheels_cache_size = filesystem.format_directory_size(wheels_cache_location)
+
+        message = (
+            textwrap.dedent(
+                """
+                    Package index page cache location (pip v23.3+): {http_cache_location}
+                    Package index page cache location (older pips): {old_http_cache_location}
+                    Package index page cache size: {http_cache_size}
+                    Number of HTTP files: {num_http_files}
+                    Locally built wheels location: {wheels_cache_location}
+                    Locally built wheels size: {wheels_cache_size}
+                    Number of locally built wheels: {package_count}
+                """  # noqa: E501
+            )
+            .format(
+                http_cache_location=http_cache_location,
+                old_http_cache_location=old_http_cache_location,
+                http_cache_size=http_cache_size,
+                num_http_files=num_http_files,
+                wheels_cache_location=wheels_cache_location,
+                package_count=num_packages,
+                wheels_cache_size=wheels_cache_size,
+            )
+            .strip()
+        )
+
+        logger.info(message)
+
+    def list_cache_items(self, options: Values, args: List[Any]) -> None:
+        if len(args) > 1:
+            raise CommandError("Too many arguments")
+
+        if args:
+            pattern = args[0]
+        else:
+            pattern = "*"
+
+        files = self._find_wheels(options, pattern)
+        if options.list_format == "human":
+            self.format_for_human(files)
+        else:
+            self.format_for_abspath(files)
+
+    def format_for_human(self, files: List[str]) -> None:
+        if not files:
+            logger.info("No locally built wheels cached.")
+            return
+
+        results = []
+        for filename in files:
+            wheel = os.path.basename(filename)
+            size = filesystem.format_file_size(filename)
+            results.append(f" - {wheel} ({size})")
+        logger.info("Cache contents:\n")
+        logger.info("\n".join(sorted(results)))
+
+    def format_for_abspath(self, files: List[str]) -> None:
+        if files:
+            logger.info("\n".join(sorted(files)))
+
+    def remove_cache_items(self, options: Values, args: List[Any]) -> None:
+        if len(args) > 1:
+            raise CommandError("Too many arguments")
+
+        if not args:
+            raise CommandError("Please provide a pattern")
+
+        files = self._find_wheels(options, args[0])
+
+        no_matching_msg = "No matching packages"
+        if args[0] == "*":
+            # Only fetch http files if no specific pattern given
+            files += self._find_http_files(options)
+        else:
+            # Add the pattern to the log message
+            no_matching_msg += f' for pattern "{args[0]}"'
+
+        if not files:
+            logger.warning(no_matching_msg)
+
+        for filename in files:
+            os.unlink(filename)
+            logger.verbose("Removed %s", filename)
+        logger.info("Files removed: %s", len(files))
+
+    def purge_cache(self, options: Values, args: List[Any]) -> None:
+        if args:
+            raise CommandError("Too many arguments")
+
+        return self.remove_cache_items(options, ["*"])
+
+    def _cache_dir(self, options: Values, subdir: str) -> str:
+        return os.path.join(options.cache_dir, subdir)
+
+    def _find_http_files(self, options: Values) -> List[str]:
+        old_http_dir = self._cache_dir(options, "http")
+        new_http_dir = self._cache_dir(options, "http-v2")
+        return filesystem.find_files(old_http_dir, "*") + filesystem.find_files(
+            new_http_dir, "*"
+        )
+
+    def _find_wheels(self, options: Values, pattern: str) -> List[str]:
+        wheel_dir = self._cache_dir(options, "wheels")
+
+        # The wheel filename format, as specified in PEP 427, is:
+        #     {distribution}-{version}(-{build})?-{python}-{abi}-{platform}.whl
+        #
+        # Additionally, non-alphanumeric values in the distribution are
+        # normalized to underscores (_), meaning hyphens can never occur
+        # before `-{version}`.
+        #
+        # Given that information:
+        # - If the pattern we're given contains a hyphen (-), the user is
+        #   providing at least the version. Thus, we can just append `*.whl`
+        #   to match the rest of it.
+        # - If the pattern we're given doesn't contain a hyphen (-), the
+        #   user is only providing the name. Thus, we append `-*.whl` to
+        #   match the hyphen before the version, followed by anything else.
+        #
+        # PEP 427: https://www.python.org/dev/peps/pep-0427/
+        pattern = pattern + ("*.whl" if "-" in pattern else "-*.whl")
+
+        return filesystem.find_files(wheel_dir, pattern)

galaxy/lib/python3.12/site-packages/pip/_internal/commands/check.py

@@ -0,0 +1,54 @@
+import logging
+from optparse import Values
+from typing import List
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.operations.check import (
+    check_package_set,
+    create_package_set_from_installed,
+    warn_legacy_versions_and_specifiers,
+)
+from pip._internal.utils.misc import write_output
+
+logger = logging.getLogger(__name__)
+
+
+class CheckCommand(Command):
+    """Verify installed packages have compatible dependencies."""
+
+    usage = """
+      %prog [options]"""
+
+    def run(self, options: Values, args: List[str]) -> int:
+        package_set, parsing_probs = create_package_set_from_installed()
+        warn_legacy_versions_and_specifiers(package_set)
+        missing, conflicting = check_package_set(package_set)
+
+        for project_name in missing:
+            version = package_set[project_name].version
+            for dependency in missing[project_name]:
+                write_output(
+                    "%s %s requires %s, which is not installed.",
+                    project_name,
+                    version,
+                    dependency[0],
+                )
+
+        for project_name in conflicting:
+            version = package_set[project_name].version
+            for dep_name, dep_version, req in conflicting[project_name]:
+                write_output(
+                    "%s %s has requirement %s, but you have %s %s.",
+                    project_name,
+                    version,
+                    req,
+                    dep_name,
+                    dep_version,
+                )
+
+        if missing or conflicting or parsing_probs:
+            return ERROR
+        else:
+            write_output("No broken requirements found.")
+            return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/completion.py

@@ -0,0 +1,130 @@
+import sys
+import textwrap
+from optparse import Values
+from typing import List
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.utils.misc import get_prog
+
+BASE_COMPLETION = """
+# pip {shell} completion start{script}# pip {shell} completion end
+"""
+
+COMPLETION_SCRIPTS = {
+    "bash": """
+        _pip_completion()
+        {{
+            COMPREPLY=( $( COMP_WORDS="${{COMP_WORDS[*]}}" \\
+                           COMP_CWORD=$COMP_CWORD \\
+                           PIP_AUTO_COMPLETE=1 $1 2>/dev/null ) )
+        }}
+        complete -o default -F _pip_completion {prog}
+    """,
+    "zsh": """
+        #compdef -P pip[0-9.]#
+        __pip() {{
+          compadd $( COMP_WORDS="$words[*]" \\
+                     COMP_CWORD=$((CURRENT-1)) \\
+                     PIP_AUTO_COMPLETE=1 $words[1] 2>/dev/null )
+        }}
+        if [[ $zsh_eval_context[-1] == loadautofunc ]]; then
+          # autoload from fpath, call function directly
+          __pip "$@"
+        else
+          # eval/source/. command, register function for later
+          compdef __pip -P 'pip[0-9.]#'
+        fi
+    """,
+    "fish": """
+        function __fish_complete_pip
+            set -lx COMP_WORDS (commandline -o) ""
+            set -lx COMP_CWORD ( \\
+                math (contains -i -- (commandline -t) $COMP_WORDS)-1 \\
+            )
+            set -lx PIP_AUTO_COMPLETE 1
+            string split \\  -- (eval $COMP_WORDS[1])
+        end
+        complete -fa "(__fish_complete_pip)" -c {prog}
+    """,
+    "powershell": """
+        if ((Test-Path Function:\\TabExpansion) -and -not `
+            (Test-Path Function:\\_pip_completeBackup)) {{
+            Rename-Item Function:\\TabExpansion _pip_completeBackup
+        }}
+        function TabExpansion($line, $lastWord) {{
+            $lastBlock = [regex]::Split($line, '[|;]')[-1].TrimStart()
+            if ($lastBlock.StartsWith("{prog} ")) {{
+                $Env:COMP_WORDS=$lastBlock
+                $Env:COMP_CWORD=$lastBlock.Split().Length - 1
+                $Env:PIP_AUTO_COMPLETE=1
+                (& {prog}).Split()
+                Remove-Item Env:COMP_WORDS
+                Remove-Item Env:COMP_CWORD
+                Remove-Item Env:PIP_AUTO_COMPLETE
+            }}
+            elseif (Test-Path Function:\\_pip_completeBackup) {{
+                # Fall back on existing tab expansion
+                _pip_completeBackup $line $lastWord
+            }}
+        }}
+    """,
+}
+
+
+class CompletionCommand(Command):
+    """A helper command to be used for command completion."""
+
+    ignore_require_venv = True
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "--bash",
+            "-b",
+            action="store_const",
+            const="bash",
+            dest="shell",
+            help="Emit completion code for bash",
+        )
+        self.cmd_opts.add_option(
+            "--zsh",
+            "-z",
+            action="store_const",
+            const="zsh",
+            dest="shell",
+            help="Emit completion code for zsh",
+        )
+        self.cmd_opts.add_option(
+            "--fish",
+            "-f",
+            action="store_const",
+            const="fish",
+            dest="shell",
+            help="Emit completion code for fish",
+        )
+        self.cmd_opts.add_option(
+            "--powershell",
+            "-p",
+            action="store_const",
+            const="powershell",
+            dest="shell",
+            help="Emit completion code for powershell",
+        )
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        """Prints the completion code of the given shell"""
+        shells = COMPLETION_SCRIPTS.keys()
+        shell_options = ["--" + shell for shell in sorted(shells)]
+        if options.shell in shells:
+            script = textwrap.dedent(
+                COMPLETION_SCRIPTS.get(options.shell, "").format(prog=get_prog())
+            )
+            print(BASE_COMPLETION.format(script=script, shell=options.shell))
+            return SUCCESS
+        else:
+            sys.stderr.write(
+                "ERROR: You must pass {}\n".format(" or ".join(shell_options))
+            )
+            return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/configuration.py

@@ -0,0 +1,280 @@
+import logging
+import os
+import subprocess
+from optparse import Values
+from typing import Any, List, Optional
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.configuration import (
+    Configuration,
+    Kind,
+    get_configuration_files,
+    kinds,
+)
+from pip._internal.exceptions import PipError
+from pip._internal.utils.logging import indent_log
+from pip._internal.utils.misc import get_prog, write_output
+
+logger = logging.getLogger(__name__)
+
+
+class ConfigurationCommand(Command):
+    """
+    Manage local and global configuration.
+
+    Subcommands:
+
+    - list: List the active configuration (or from the file specified)
+    - edit: Edit the configuration file in an editor
+    - get: Get the value associated with command.option
+    - set: Set the command.option=value
+    - unset: Unset the value associated with command.option
+    - debug: List the configuration files and values defined under them
+
+    Configuration keys should be dot separated command and option name,
+    with the special prefix "global" affecting any command. For example,
+    "pip config set global.index-url https://example.org/" would configure
+    the index url for all commands, but "pip config set download.timeout 10"
+    would configure a 10 second timeout only for "pip download" commands.
+
+    If none of --user, --global and --site are passed, a virtual
+    environment configuration file is used if one is active and the file
+    exists. Otherwise, all modifications happen to the user file by
+    default.
+    """
+
+    ignore_require_venv = True
+    usage = """
+        %prog [<file-option>] list
+        %prog [<file-option>] [--editor <editor-path>] edit
+
+        %prog [<file-option>] get command.option
+        %prog [<file-option>] set command.option value
+        %prog [<file-option>] unset command.option
+        %prog [<file-option>] debug
+    """
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "--editor",
+            dest="editor",
+            action="store",
+            default=None,
+            help=(
+                "Editor to use to edit the file. Uses VISUAL or EDITOR "
+                "environment variables if not provided."
+            ),
+        )
+
+        self.cmd_opts.add_option(
+            "--global",
+            dest="global_file",
+            action="store_true",
+            default=False,
+            help="Use the system-wide configuration file only",
+        )
+
+        self.cmd_opts.add_option(
+            "--user",
+            dest="user_file",
+            action="store_true",
+            default=False,
+            help="Use the user configuration file only",
+        )
+
+        self.cmd_opts.add_option(
+            "--site",
+            dest="site_file",
+            action="store_true",
+            default=False,
+            help="Use the current environment configuration file only",
+        )
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        handlers = {
+            "list": self.list_values,
+            "edit": self.open_in_editor,
+            "get": self.get_name,
+            "set": self.set_name_value,
+            "unset": self.unset_name,
+            "debug": self.list_config_values,
+        }
+
+        # Determine action
+        if not args or args[0] not in handlers:
+            logger.error(
+                "Need an action (%s) to perform.",
+                ", ".join(sorted(handlers)),
+            )
+            return ERROR
+
+        action = args[0]
+
+        # Determine which configuration files are to be loaded
+        #    Depends on whether the command is modifying.
+        try:
+            load_only = self._determine_file(
+                options, need_value=(action in ["get", "set", "unset", "edit"])
+            )
+        except PipError as e:
+            logger.error(e.args[0])
+            return ERROR
+
+        # Load a new configuration
+        self.configuration = Configuration(
+            isolated=options.isolated_mode, load_only=load_only
+        )
+        self.configuration.load()
+
+        # Error handling happens here, not in the action-handlers.
+        try:
+            handlers[action](options, args[1:])
+        except PipError as e:
+            logger.error(e.args[0])
+            return ERROR
+
+        return SUCCESS
+
+    def _determine_file(self, options: Values, need_value: bool) -> Optional[Kind]:
+        file_options = [
+            key
+            for key, value in (
+                (kinds.USER, options.user_file),
+                (kinds.GLOBAL, options.global_file),
+                (kinds.SITE, options.site_file),
+            )
+            if value
+        ]
+
+        if not file_options:
+            if not need_value:
+                return None
+            # Default to user, unless there's a site file.
+            elif any(
+                os.path.exists(site_config_file)
+                for site_config_file in get_configuration_files()[kinds.SITE]
+            ):
+                return kinds.SITE
+            else:
+                return kinds.USER
+        elif len(file_options) == 1:
+            return file_options[0]
+
+        raise PipError(
+            "Need exactly one file to operate upon "
+            "(--user, --site, --global) to perform."
+        )
+
+    def list_values(self, options: Values, args: List[str]) -> None:
+        self._get_n_args(args, "list", n=0)
+
+        for key, value in sorted(self.configuration.items()):
+            write_output("%s=%r", key, value)
+
+    def get_name(self, options: Values, args: List[str]) -> None:
+        key = self._get_n_args(args, "get [name]", n=1)
+        value = self.configuration.get_value(key)
+
+        write_output("%s", value)
+
+    def set_name_value(self, options: Values, args: List[str]) -> None:
+        key, value = self._get_n_args(args, "set [name] [value]", n=2)
+        self.configuration.set_value(key, value)
+
+        self._save_configuration()
+
+    def unset_name(self, options: Values, args: List[str]) -> None:
+        key = self._get_n_args(args, "unset [name]", n=1)
+        self.configuration.unset_value(key)
+
+        self._save_configuration()
+
+    def list_config_values(self, options: Values, args: List[str]) -> None:
+        """List config key-value pairs across different config files"""
+        self._get_n_args(args, "debug", n=0)
+
+        self.print_env_var_values()
+        # Iterate over config files and print if they exist, and the
+        # key-value pairs present in them if they do
+        for variant, files in sorted(self.configuration.iter_config_files()):
+            write_output("%s:", variant)
+            for fname in files:
+                with indent_log():
+                    file_exists = os.path.exists(fname)
+                    write_output("%s, exists: %r", fname, file_exists)
+                    if file_exists:
+                        self.print_config_file_values(variant)
+
+    def print_config_file_values(self, variant: Kind) -> None:
+        """Get key-value pairs from the file of a variant"""
+        for name, value in self.configuration.get_values_in_config(variant).items():
+            with indent_log():
+                write_output("%s: %s", name, value)
+
+    def print_env_var_values(self) -> None:
+        """Get key-values pairs present as environment variables"""
+        write_output("%s:", "env_var")
+        with indent_log():
+            for key, value in sorted(self.configuration.get_environ_vars()):
+                env_var = f"PIP_{key.upper()}"
+                write_output("%s=%r", env_var, value)
+
+    def open_in_editor(self, options: Values, args: List[str]) -> None:
+        editor = self._determine_editor(options)
+
+        fname = self.configuration.get_file_to_edit()
+        if fname is None:
+            raise PipError("Could not determine appropriate file.")
+        elif '"' in fname:
+            # This shouldn't happen, unless we see a username like that.
+            # If that happens, we'd appreciate a pull request fixing this.
+            raise PipError(
+                f'Can not open an editor for a file name containing "\n{fname}'
+            )
+
+        try:
+            subprocess.check_call(f'{editor} "{fname}"', shell=True)
+        except FileNotFoundError as e:
+            if not e.filename:
+                e.filename = editor
+            raise
+        except subprocess.CalledProcessError as e:
+            raise PipError(f"Editor Subprocess exited with exit code {e.returncode}")
+
+    def _get_n_args(self, args: List[str], example: str, n: int) -> Any:
+        """Helper to make sure the command got the right number of arguments"""
+        if len(args) != n:
+            msg = (
+                f"Got unexpected number of arguments, expected {n}. "
+                f'(example: "{get_prog()} config {example}")'
+            )
+            raise PipError(msg)
+
+        if n == 1:
+            return args[0]
+        else:
+            return args
+
+    def _save_configuration(self) -> None:
+        # We successfully ran a modifying command. Need to save the
+        # configuration.
+        try:
+            self.configuration.save()
+        except Exception:
+            logger.exception(
+                "Unable to save configuration. Please report this as a bug."
+            )
+            raise PipError("Internal Error.")
+
+    def _determine_editor(self, options: Values) -> str:
+        if options.editor is not None:
+            return options.editor
+        elif "VISUAL" in os.environ:
+            return os.environ["VISUAL"]
+        elif "EDITOR" in os.environ:
+            return os.environ["EDITOR"]
+        else:
+            raise PipError("Could not determine editor to use.")

galaxy/lib/python3.12/site-packages/pip/_internal/commands/debug.py

@@ -0,0 +1,201 @@
+import importlib.resources
+import locale
+import logging
+import os
+import sys
+from optparse import Values
+from types import ModuleType
+from typing import Any, Dict, List, Optional
+
+import pip._vendor
+from pip._vendor.certifi import where
+from pip._vendor.packaging.version import parse as parse_version
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.cmdoptions import make_target_python
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.configuration import Configuration
+from pip._internal.metadata import get_environment
+from pip._internal.utils.logging import indent_log
+from pip._internal.utils.misc import get_pip_version
+
+logger = logging.getLogger(__name__)
+
+
+def show_value(name: str, value: Any) -> None:
+    logger.info("%s: %s", name, value)
+
+
+def show_sys_implementation() -> None:
+    logger.info("sys.implementation:")
+    implementation_name = sys.implementation.name
+    with indent_log():
+        show_value("name", implementation_name)
+
+
+def create_vendor_txt_map() -> Dict[str, str]:
+    with importlib.resources.open_text("pip._vendor", "vendor.txt") as f:
+        # Purge non version specifying lines.
+        # Also, remove any space prefix or suffixes (including comments).
+        lines = [
+            line.strip().split(" ", 1)[0] for line in f.readlines() if "==" in line
+        ]
+
+    # Transform into "module" -> version dict.
+    return dict(line.split("==", 1) for line in lines)
+
+
+def get_module_from_module_name(module_name: str) -> Optional[ModuleType]:
+    # Module name can be uppercase in vendor.txt for some reason...
+    module_name = module_name.lower().replace("-", "_")
+    # PATCH: setuptools is actually only pkg_resources.
+    if module_name == "setuptools":
+        module_name = "pkg_resources"
+
+    try:
+        __import__(f"pip._vendor.{module_name}", globals(), locals(), level=0)
+        return getattr(pip._vendor, module_name)
+    except ImportError:
+        # We allow 'truststore' to fail to import due
+        # to being unavailable on Python 3.9 and earlier.
+        if module_name == "truststore" and sys.version_info < (3, 10):
+            return None
+        raise
+
+
+def get_vendor_version_from_module(module_name: str) -> Optional[str]:
+    module = get_module_from_module_name(module_name)
+    version = getattr(module, "__version__", None)
+
+    if module and not version:
+        # Try to find version in debundled module info.
+        assert module.__file__ is not None
+        env = get_environment([os.path.dirname(module.__file__)])
+        dist = env.get_distribution(module_name)
+        if dist:
+            version = str(dist.version)
+
+    return version
+
+
+def show_actual_vendor_versions(vendor_txt_versions: Dict[str, str]) -> None:
+    """Log the actual version and print extra info if there is
+    a conflict or if the actual version could not be imported.
+    """
+    for module_name, expected_version in vendor_txt_versions.items():
+        extra_message = ""
+        actual_version = get_vendor_version_from_module(module_name)
+        if not actual_version:
+            extra_message = (
+                " (Unable to locate actual module version, using"
+                " vendor.txt specified version)"
+            )
+            actual_version = expected_version
+        elif parse_version(actual_version) != parse_version(expected_version):
+            extra_message = (
+                " (CONFLICT: vendor.txt suggests version should"
+                f" be {expected_version})"
+            )
+        logger.info("%s==%s%s", module_name, actual_version, extra_message)
+
+
+def show_vendor_versions() -> None:
+    logger.info("vendored library versions:")
+
+    vendor_txt_versions = create_vendor_txt_map()
+    with indent_log():
+        show_actual_vendor_versions(vendor_txt_versions)
+
+
+def show_tags(options: Values) -> None:
+    tag_limit = 10
+
+    target_python = make_target_python(options)
+    tags = target_python.get_sorted_tags()
+
+    # Display the target options that were explicitly provided.
+    formatted_target = target_python.format_given()
+    suffix = ""
+    if formatted_target:
+        suffix = f" (target: {formatted_target})"
+
+    msg = f"Compatible tags: {len(tags)}{suffix}"
+    logger.info(msg)
+
+    if options.verbose < 1 and len(tags) > tag_limit:
+        tags_limited = True
+        tags = tags[:tag_limit]
+    else:
+        tags_limited = False
+
+    with indent_log():
+        for tag in tags:
+            logger.info(str(tag))
+
+        if tags_limited:
+            msg = f"...\n[First {tag_limit} tags shown. Pass --verbose to show all.]"
+            logger.info(msg)
+
+
+def ca_bundle_info(config: Configuration) -> str:
+    levels = {key.split(".", 1)[0] for key, _ in config.items()}
+    if not levels:
+        return "Not specified"
+
+    levels_that_override_global = ["install", "wheel", "download"]
+    global_overriding_level = [
+        level for level in levels if level in levels_that_override_global
+    ]
+    if not global_overriding_level:
+        return "global"
+
+    if "global" in levels:
+        levels.remove("global")
+    return ", ".join(levels)
+
+
+class DebugCommand(Command):
+    """
+    Display debug information.
+    """
+
+    usage = """
+      %prog <options>"""
+    ignore_require_venv = True
+
+    def add_options(self) -> None:
+        cmdoptions.add_target_python_options(self.cmd_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+        self.parser.config.load()
+
+    def run(self, options: Values, args: List[str]) -> int:
+        logger.warning(
+            "This command is only meant for debugging. "
+            "Do not use this with automation for parsing and getting these "
+            "details, since the output and options of this command may "
+            "change without notice."
+        )
+        show_value("pip version", get_pip_version())
+        show_value("sys.version", sys.version)
+        show_value("sys.executable", sys.executable)
+        show_value("sys.getdefaultencoding", sys.getdefaultencoding())
+        show_value("sys.getfilesystemencoding", sys.getfilesystemencoding())
+        show_value(
+            "locale.getpreferredencoding",
+            locale.getpreferredencoding(),
+        )
+        show_value("sys.platform", sys.platform)
+        show_sys_implementation()
+
+        show_value("'cert' config value", ca_bundle_info(self.parser.config))
+        show_value("REQUESTS_CA_BUNDLE", os.environ.get("REQUESTS_CA_BUNDLE"))
+        show_value("CURL_CA_BUNDLE", os.environ.get("CURL_CA_BUNDLE"))
+        show_value("pip._vendor.certifi.where()", where())
+        show_value("pip._vendor.DEBUNDLED", pip._vendor.DEBUNDLED)
+
+        show_vendor_versions()
+
+        show_tags(options)
+
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/download.py

@@ -0,0 +1,147 @@
+import logging
+import os
+from optparse import Values
+from typing import List
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.cmdoptions import make_target_python
+from pip._internal.cli.req_command import RequirementCommand, with_cleanup
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.operations.build.build_tracker import get_build_tracker
+from pip._internal.req.req_install import check_legacy_setup_py_options
+from pip._internal.utils.misc import ensure_dir, normalize_path, write_output
+from pip._internal.utils.temp_dir import TempDirectory
+
+logger = logging.getLogger(__name__)
+
+
+class DownloadCommand(RequirementCommand):
+    """
+    Download packages from:
+
+    - PyPI (and other indexes) using requirement specifiers.
+    - VCS project urls.
+    - Local project directories.
+    - Local or remote source archives.
+
+    pip also supports downloading from "requirements files", which provide
+    an easy way to specify a whole environment to be downloaded.
+    """
+
+    usage = """
+      %prog [options] <requirement specifier> [package-index-options] ...
+      %prog [options] -r <requirements file> [package-index-options] ...
+      %prog [options] <vcs project url> ...
+      %prog [options] <local project path> ...
+      %prog [options] <archive url/path> ..."""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(cmdoptions.constraints())
+        self.cmd_opts.add_option(cmdoptions.requirements())
+        self.cmd_opts.add_option(cmdoptions.no_deps())
+        self.cmd_opts.add_option(cmdoptions.global_options())
+        self.cmd_opts.add_option(cmdoptions.no_binary())
+        self.cmd_opts.add_option(cmdoptions.only_binary())
+        self.cmd_opts.add_option(cmdoptions.prefer_binary())
+        self.cmd_opts.add_option(cmdoptions.src())
+        self.cmd_opts.add_option(cmdoptions.pre())
+        self.cmd_opts.add_option(cmdoptions.require_hashes())
+        self.cmd_opts.add_option(cmdoptions.progress_bar())
+        self.cmd_opts.add_option(cmdoptions.no_build_isolation())
+        self.cmd_opts.add_option(cmdoptions.use_pep517())
+        self.cmd_opts.add_option(cmdoptions.no_use_pep517())
+        self.cmd_opts.add_option(cmdoptions.check_build_deps())
+        self.cmd_opts.add_option(cmdoptions.ignore_requires_python())
+
+        self.cmd_opts.add_option(
+            "-d",
+            "--dest",
+            "--destination-dir",
+            "--destination-directory",
+            dest="download_dir",
+            metavar="dir",
+            default=os.curdir,
+            help="Download packages into <dir>.",
+        )
+
+        cmdoptions.add_target_python_options(self.cmd_opts)
+
+        index_opts = cmdoptions.make_option_group(
+            cmdoptions.index_group,
+            self.parser,
+        )
+
+        self.parser.insert_option_group(0, index_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    @with_cleanup
+    def run(self, options: Values, args: List[str]) -> int:
+        options.ignore_installed = True
+        # editable doesn't really make sense for `pip download`, but the bowels
+        # of the RequirementSet code require that property.
+        options.editables = []
+
+        cmdoptions.check_dist_restriction(options)
+
+        options.download_dir = normalize_path(options.download_dir)
+        ensure_dir(options.download_dir)
+
+        session = self.get_default_session(options)
+
+        target_python = make_target_python(options)
+        finder = self._build_package_finder(
+            options=options,
+            session=session,
+            target_python=target_python,
+            ignore_requires_python=options.ignore_requires_python,
+        )
+
+        build_tracker = self.enter_context(get_build_tracker())
+
+        directory = TempDirectory(
+            delete=not options.no_clean,
+            kind="download",
+            globally_managed=True,
+        )
+
+        reqs = self.get_requirements(args, options, finder, session)
+        check_legacy_setup_py_options(options, reqs)
+
+        preparer = self.make_requirement_preparer(
+            temp_build_dir=directory,
+            options=options,
+            build_tracker=build_tracker,
+            session=session,
+            finder=finder,
+            download_dir=options.download_dir,
+            use_user_site=False,
+            verbosity=self.verbosity,
+        )
+
+        resolver = self.make_resolver(
+            preparer=preparer,
+            finder=finder,
+            options=options,
+            ignore_requires_python=options.ignore_requires_python,
+            use_pep517=options.use_pep517,
+            py_version_info=options.python_version,
+        )
+
+        self.trace_basic_info(finder)
+
+        requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
+
+        downloaded: List[str] = []
+        for req in requirement_set.requirements.values():
+            if req.satisfied_by is None:
+                assert req.name is not None
+                preparer.save_linked_requirement(req)
+                downloaded.append(req.name)
+
+        preparer.prepare_linked_requirements_more(requirement_set.requirements.values())
+        requirement_set.warn_legacy_versions_and_specifiers()
+
+        if downloaded:
+            write_output("Successfully downloaded %s", " ".join(downloaded))
+
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/freeze.py

@@ -0,0 +1,109 @@
+import sys
+from optparse import Values
+from typing import AbstractSet, List
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.operations.freeze import freeze
+from pip._internal.utils.compat import stdlib_pkgs
+
+
+def _should_suppress_build_backends() -> bool:
+    return sys.version_info < (3, 12)
+
+
+def _dev_pkgs() -> AbstractSet[str]:
+    pkgs = {"pip"}
+
+    if _should_suppress_build_backends():
+        pkgs |= {"setuptools", "distribute", "wheel"}
+        pkgs |= {"setuptools", "distribute", "wheel", "pkg-resources"}
+
+    return pkgs
+
+
+class FreezeCommand(Command):
+    """
+    Output installed packages in requirements format.
+
+    packages are listed in a case-insensitive sorted order.
+    """
+
+    usage = """
+      %prog [options]"""
+    log_streams = ("ext://sys.stderr", "ext://sys.stderr")
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-r",
+            "--requirement",
+            dest="requirements",
+            action="append",
+            default=[],
+            metavar="file",
+            help=(
+                "Use the order in the given requirements file and its "
+                "comments when generating output. This option can be "
+                "used multiple times."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "-l",
+            "--local",
+            dest="local",
+            action="store_true",
+            default=False,
+            help=(
+                "If in a virtualenv that has global access, do not output "
+                "globally-installed packages."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "--user",
+            dest="user",
+            action="store_true",
+            default=False,
+            help="Only output packages installed in user-site.",
+        )
+        self.cmd_opts.add_option(cmdoptions.list_path())
+        self.cmd_opts.add_option(
+            "--all",
+            dest="freeze_all",
+            action="store_true",
+            help=(
+                "Do not skip these packages in the output:"
+                " {}".format(", ".join(_dev_pkgs()))
+            ),
+        )
+        self.cmd_opts.add_option(
+            "--exclude-editable",
+            dest="exclude_editable",
+            action="store_true",
+            help="Exclude editable package from output.",
+        )
+        self.cmd_opts.add_option(cmdoptions.list_exclude())
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        skip = set(stdlib_pkgs)
+        if not options.freeze_all:
+            skip.update(_dev_pkgs())
+
+        if options.excludes:
+            skip.update(options.excludes)
+
+        cmdoptions.check_list_path_option(options)
+
+        for line in freeze(
+            requirement=options.requirements,
+            local_only=options.local,
+            user_only=options.user,
+            paths=options.path,
+            isolated=options.isolated_mode,
+            skip=skip,
+            exclude_editable=options.exclude_editable,
+        ):
+            sys.stdout.write(line + "\n")
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/hash.py

@@ -0,0 +1,59 @@
+import hashlib
+import logging
+import sys
+from optparse import Values
+from typing import List
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.utils.hashes import FAVORITE_HASH, STRONG_HASHES
+from pip._internal.utils.misc import read_chunks, write_output
+
+logger = logging.getLogger(__name__)
+
+
+class HashCommand(Command):
+    """
+    Compute a hash of a local package archive.
+
+    These can be used with --hash in a requirements file to do repeatable
+    installs.
+    """
+
+    usage = "%prog [options] <file> ..."
+    ignore_require_venv = True
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-a",
+            "--algorithm",
+            dest="algorithm",
+            choices=STRONG_HASHES,
+            action="store",
+            default=FAVORITE_HASH,
+            help="The hash algorithm to use: one of {}".format(
+                ", ".join(STRONG_HASHES)
+            ),
+        )
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        if not args:
+            self.parser.print_usage(sys.stderr)
+            return ERROR
+
+        algorithm = options.algorithm
+        for path in args:
+            write_output(
+                "%s:\n--hash=%s:%s", path, algorithm, _hash_of_file(path, algorithm)
+            )
+        return SUCCESS
+
+
+def _hash_of_file(path: str, algorithm: str) -> str:
+    """Return the hash digest of a file."""
+    with open(path, "rb") as archive:
+        hash = hashlib.new(algorithm)
+        for chunk in read_chunks(archive):
+            hash.update(chunk)
+    return hash.hexdigest()

galaxy/lib/python3.12/site-packages/pip/_internal/commands/help.py

@@ -0,0 +1,41 @@
+from optparse import Values
+from typing import List
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.exceptions import CommandError
+
+
+class HelpCommand(Command):
+    """Show help for commands"""
+
+    usage = """
+      %prog <command>"""
+    ignore_require_venv = True
+
+    def run(self, options: Values, args: List[str]) -> int:
+        from pip._internal.commands import (
+            commands_dict,
+            create_command,
+            get_similar_commands,
+        )
+
+        try:
+            # 'pip help' with no args is handled by pip.__init__.parseopt()
+            cmd_name = args[0]  # the command we need help for
+        except IndexError:
+            return SUCCESS
+
+        if cmd_name not in commands_dict:
+            guess = get_similar_commands(cmd_name)
+
+            msg = [f'unknown command "{cmd_name}"']
+            if guess:
+                msg.append(f'maybe you meant "{guess}"')
+
+            raise CommandError(" - ".join(msg))
+
+        command = create_command(cmd_name)
+        command.parser.print_help()
+
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/index.py

@@ -0,0 +1,139 @@
+import logging
+from optparse import Values
+from typing import Any, Iterable, List, Optional, Union
+
+from pip._vendor.packaging.version import LegacyVersion, Version
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.req_command import IndexGroupCommand
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.commands.search import print_dist_installation_info
+from pip._internal.exceptions import CommandError, DistributionNotFound, PipError
+from pip._internal.index.collector import LinkCollector
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.models.selection_prefs import SelectionPreferences
+from pip._internal.models.target_python import TargetPython
+from pip._internal.network.session import PipSession
+from pip._internal.utils.misc import write_output
+
+logger = logging.getLogger(__name__)
+
+
+class IndexCommand(IndexGroupCommand):
+    """
+    Inspect information available from package indexes.
+    """
+
+    ignore_require_venv = True
+    usage = """
+        %prog versions <package>
+    """
+
+    def add_options(self) -> None:
+        cmdoptions.add_target_python_options(self.cmd_opts)
+
+        self.cmd_opts.add_option(cmdoptions.ignore_requires_python())
+        self.cmd_opts.add_option(cmdoptions.pre())
+        self.cmd_opts.add_option(cmdoptions.no_binary())
+        self.cmd_opts.add_option(cmdoptions.only_binary())
+
+        index_opts = cmdoptions.make_option_group(
+            cmdoptions.index_group,
+            self.parser,
+        )
+
+        self.parser.insert_option_group(0, index_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        handlers = {
+            "versions": self.get_available_package_versions,
+        }
+
+        logger.warning(
+            "pip index is currently an experimental command. "
+            "It may be removed/changed in a future release "
+            "without prior warning."
+        )
+
+        # Determine action
+        if not args or args[0] not in handlers:
+            logger.error(
+                "Need an action (%s) to perform.",
+                ", ".join(sorted(handlers)),
+            )
+            return ERROR
+
+        action = args[0]
+
+        # Error handling happens here, not in the action-handlers.
+        try:
+            handlers[action](options, args[1:])
+        except PipError as e:
+            logger.error(e.args[0])
+            return ERROR
+
+        return SUCCESS
+
+    def _build_package_finder(
+        self,
+        options: Values,
+        session: PipSession,
+        target_python: Optional[TargetPython] = None,
+        ignore_requires_python: Optional[bool] = None,
+    ) -> PackageFinder:
+        """
+        Create a package finder appropriate to the index command.
+        """
+        link_collector = LinkCollector.create(session, options=options)
+
+        # Pass allow_yanked=False to ignore yanked versions.
+        selection_prefs = SelectionPreferences(
+            allow_yanked=False,
+            allow_all_prereleases=options.pre,
+            ignore_requires_python=ignore_requires_python,
+        )
+
+        return PackageFinder.create(
+            link_collector=link_collector,
+            selection_prefs=selection_prefs,
+            target_python=target_python,
+        )
+
+    def get_available_package_versions(self, options: Values, args: List[Any]) -> None:
+        if len(args) != 1:
+            raise CommandError("You need to specify exactly one argument")
+
+        target_python = cmdoptions.make_target_python(options)
+        query = args[0]
+
+        with self._build_session(options) as session:
+            finder = self._build_package_finder(
+                options=options,
+                session=session,
+                target_python=target_python,
+                ignore_requires_python=options.ignore_requires_python,
+            )
+
+            versions: Iterable[Union[LegacyVersion, Version]] = (
+                candidate.version for candidate in finder.find_all_candidates(query)
+            )
+
+            if not options.pre:
+                # Remove prereleases
+                versions = (
+                    version for version in versions if not version.is_prerelease
+                )
+            versions = set(versions)
+
+            if not versions:
+                raise DistributionNotFound(
+                    f"No matching distribution found for {query}"
+                )
+
+            formatted_versions = [str(ver) for ver in sorted(versions, reverse=True)]
+            latest = formatted_versions[0]
+
+        write_output(f"{query} ({latest})")
+        write_output("Available versions: {}".format(", ".join(formatted_versions)))
+        print_dist_installation_info(query, latest)

galaxy/lib/python3.12/site-packages/pip/_internal/commands/inspect.py

@@ -0,0 +1,92 @@
+import logging
+from optparse import Values
+from typing import Any, Dict, List
+
+from pip._vendor.packaging.markers import default_environment
+from pip._vendor.rich import print_json
+
+from pip import __version__
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.req_command import Command
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.metadata import BaseDistribution, get_environment
+from pip._internal.utils.compat import stdlib_pkgs
+from pip._internal.utils.urls import path_to_url
+
+logger = logging.getLogger(__name__)
+
+
+class InspectCommand(Command):
+    """
+    Inspect the content of a Python environment and produce a report in JSON format.
+    """
+
+    ignore_require_venv = True
+    usage = """
+      %prog [options]"""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "--local",
+            action="store_true",
+            default=False,
+            help=(
+                "If in a virtualenv that has global access, do not list "
+                "globally-installed packages."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "--user",
+            dest="user",
+            action="store_true",
+            default=False,
+            help="Only output packages installed in user-site.",
+        )
+        self.cmd_opts.add_option(cmdoptions.list_path())
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        cmdoptions.check_list_path_option(options)
+        dists = get_environment(options.path).iter_installed_distributions(
+            local_only=options.local,
+            user_only=options.user,
+            skip=set(stdlib_pkgs),
+        )
+        output = {
+            "version": "1",
+            "pip_version": __version__,
+            "installed": [self._dist_to_dict(dist) for dist in dists],
+            "environment": default_environment(),
+            # TODO tags? scheme?
+        }
+        print_json(data=output)
+        return SUCCESS
+
+    def _dist_to_dict(self, dist: BaseDistribution) -> Dict[str, Any]:
+        res: Dict[str, Any] = {
+            "metadata": dist.metadata_dict,
+            "metadata_location": dist.info_location,
+        }
+        # direct_url. Note that we don't have download_info (as in the installation
+        # report) since it is not recorded in installed metadata.
+        direct_url = dist.direct_url
+        if direct_url is not None:
+            res["direct_url"] = direct_url.to_dict()
+        else:
+            # Emulate direct_url for legacy editable installs.
+            editable_project_location = dist.editable_project_location
+            if editable_project_location is not None:
+                res["direct_url"] = {
+                    "url": path_to_url(editable_project_location),
+                    "dir_info": {
+                        "editable": True,
+                    },
+                }
+        # installer
+        installer = dist.installer
+        if dist.installer:
+            res["installer"] = installer
+        # requested
+        if dist.installed_with_dist_info:
+            res["requested"] = dist.requested
+        return res

galaxy/lib/python3.12/site-packages/pip/_internal/commands/install.py

@@ -0,0 +1,774 @@
+import errno
+import json
+import operator
+import os
+import shutil
+import site
+from optparse import SUPPRESS_HELP, Values
+from typing import List, Optional
+
+from pip._vendor.rich import print_json
+
+from pip._internal.cache import WheelCache
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.cmdoptions import make_target_python
+from pip._internal.cli.req_command import (
+    RequirementCommand,
+    warn_if_run_as_root,
+    with_cleanup,
+)
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.exceptions import CommandError, InstallationError
+from pip._internal.locations import get_scheme
+from pip._internal.metadata import get_environment
+from pip._internal.models.installation_report import InstallationReport
+from pip._internal.operations.build.build_tracker import get_build_tracker
+from pip._internal.operations.check import ConflictDetails, check_install_conflicts
+from pip._internal.req import install_given_reqs
+from pip._internal.req.req_install import (
+    InstallRequirement,
+    check_legacy_setup_py_options,
+)
+from pip._internal.utils.compat import WINDOWS
+from pip._internal.utils.filesystem import test_writable_dir
+from pip._internal.utils.logging import getLogger
+from pip._internal.utils.misc import (
+    check_externally_managed,
+    ensure_dir,
+    get_pip_version,
+    protect_pip_from_modification_on_windows,
+    write_output,
+)
+from pip._internal.utils.temp_dir import TempDirectory
+from pip._internal.utils.virtualenv import (
+    running_under_virtualenv,
+    virtualenv_no_global,
+)
+from pip._internal.wheel_builder import build, should_build_for_install_command
+
+logger = getLogger(__name__)
+
+
+class InstallCommand(RequirementCommand):
+    """
+    Install packages from:
+
+    - PyPI (and other indexes) using requirement specifiers.
+    - VCS project urls.
+    - Local project directories.
+    - Local or remote source archives.
+
+    pip also supports installing from "requirements files", which provide
+    an easy way to specify a whole environment to be installed.
+    """
+
+    usage = """
+      %prog [options] <requirement specifier> [package-index-options] ...
+      %prog [options] -r <requirements file> [package-index-options] ...
+      %prog [options] [-e] <vcs project url> ...
+      %prog [options] [-e] <local project path> ...
+      %prog [options] <archive url/path> ..."""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(cmdoptions.requirements())
+        self.cmd_opts.add_option(cmdoptions.constraints())
+        self.cmd_opts.add_option(cmdoptions.no_deps())
+        self.cmd_opts.add_option(cmdoptions.pre())
+
+        self.cmd_opts.add_option(cmdoptions.editable())
+        self.cmd_opts.add_option(
+            "--dry-run",
+            action="store_true",
+            dest="dry_run",
+            default=False,
+            help=(
+                "Don't actually install anything, just print what would be. "
+                "Can be used in combination with --ignore-installed "
+                "to 'resolve' the requirements."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "-t",
+            "--target",
+            dest="target_dir",
+            metavar="dir",
+            default=None,
+            help=(
+                "Install packages into <dir>. "
+                "By default this will not replace existing files/folders in "
+                "<dir>. Use --upgrade to replace existing packages in <dir> "
+                "with new versions."
+            ),
+        )
+        cmdoptions.add_target_python_options(self.cmd_opts)
+
+        self.cmd_opts.add_option(
+            "--user",
+            dest="use_user_site",
+            action="store_true",
+            help=(
+                "Install to the Python user install directory for your "
+                "platform. Typically ~/.local/, or %APPDATA%\\Python on "
+                "Windows. (See the Python documentation for site.USER_BASE "
+                "for full details.)"
+            ),
+        )
+        self.cmd_opts.add_option(
+            "--no-user",
+            dest="use_user_site",
+            action="store_false",
+            help=SUPPRESS_HELP,
+        )
+        self.cmd_opts.add_option(
+            "--root",
+            dest="root_path",
+            metavar="dir",
+            default=None,
+            help="Install everything relative to this alternate root directory.",
+        )
+        self.cmd_opts.add_option(
+            "--prefix",
+            dest="prefix_path",
+            metavar="dir",
+            default=None,
+            help=(
+                "Installation prefix where lib, bin and other top-level "
+                "folders are placed. Note that the resulting installation may "
+                "contain scripts and other resources which reference the "
+                "Python interpreter of pip, and not that of ``--prefix``. "
+                "See also the ``--python`` option if the intention is to "
+                "install packages into another (possibly pip-free) "
+                "environment."
+            ),
+        )
+
+        self.cmd_opts.add_option(cmdoptions.src())
+
+        self.cmd_opts.add_option(
+            "-U",
+            "--upgrade",
+            dest="upgrade",
+            action="store_true",
+            help=(
+                "Upgrade all specified packages to the newest available "
+                "version. The handling of dependencies depends on the "
+                "upgrade-strategy used."
+            ),
+        )
+
+        self.cmd_opts.add_option(
+            "--upgrade-strategy",
+            dest="upgrade_strategy",
+            default="only-if-needed",
+            choices=["only-if-needed", "eager"],
+            help=(
+                "Determines how dependency upgrading should be handled "
+                "[default: %default]. "
+                '"eager" - dependencies are upgraded regardless of '
+                "whether the currently installed version satisfies the "
+                "requirements of the upgraded package(s). "
+                '"only-if-needed" -  are upgraded only when they do not '
+                "satisfy the requirements of the upgraded package(s)."
+            ),
+        )
+
+        self.cmd_opts.add_option(
+            "--force-reinstall",
+            dest="force_reinstall",
+            action="store_true",
+            help="Reinstall all packages even if they are already up-to-date.",
+        )
+
+        self.cmd_opts.add_option(
+            "-I",
+            "--ignore-installed",
+            dest="ignore_installed",
+            action="store_true",
+            help=(
+                "Ignore the installed packages, overwriting them. "
+                "This can break your system if the existing package "
+                "is of a different version or was installed "
+                "with a different package manager!"
+            ),
+        )
+
+        self.cmd_opts.add_option(cmdoptions.ignore_requires_python())
+        self.cmd_opts.add_option(cmdoptions.no_build_isolation())
+        self.cmd_opts.add_option(cmdoptions.use_pep517())
+        self.cmd_opts.add_option(cmdoptions.no_use_pep517())
+        self.cmd_opts.add_option(cmdoptions.check_build_deps())
+        self.cmd_opts.add_option(cmdoptions.override_externally_managed())
+
+        self.cmd_opts.add_option(cmdoptions.config_settings())
+        self.cmd_opts.add_option(cmdoptions.global_options())
+
+        self.cmd_opts.add_option(
+            "--compile",
+            action="store_true",
+            dest="compile",
+            default=True,
+            help="Compile Python source files to bytecode",
+        )
+
+        self.cmd_opts.add_option(
+            "--no-compile",
+            action="store_false",
+            dest="compile",
+            help="Do not compile Python source files to bytecode",
+        )
+
+        self.cmd_opts.add_option(
+            "--no-warn-script-location",
+            action="store_false",
+            dest="warn_script_location",
+            default=True,
+            help="Do not warn when installing scripts outside PATH",
+        )
+        self.cmd_opts.add_option(
+            "--no-warn-conflicts",
+            action="store_false",
+            dest="warn_about_conflicts",
+            default=True,
+            help="Do not warn about broken dependencies",
+        )
+        self.cmd_opts.add_option(cmdoptions.no_binary())
+        self.cmd_opts.add_option(cmdoptions.only_binary())
+        self.cmd_opts.add_option(cmdoptions.prefer_binary())
+        self.cmd_opts.add_option(cmdoptions.require_hashes())
+        self.cmd_opts.add_option(cmdoptions.progress_bar())
+        self.cmd_opts.add_option(cmdoptions.root_user_action())
+
+        index_opts = cmdoptions.make_option_group(
+            cmdoptions.index_group,
+            self.parser,
+        )
+
+        self.parser.insert_option_group(0, index_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+        self.cmd_opts.add_option(
+            "--report",
+            dest="json_report_file",
+            metavar="file",
+            default=None,
+            help=(
+                "Generate a JSON file describing what pip did to install "
+                "the provided requirements. "
+                "Can be used in combination with --dry-run and --ignore-installed "
+                "to 'resolve' the requirements. "
+                "When - is used as file name it writes to stdout. "
+                "When writing to stdout, please combine with the --quiet option "
+                "to avoid mixing pip logging output with JSON output."
+            ),
+        )
+
+    @with_cleanup
+    def run(self, options: Values, args: List[str]) -> int:
+        if options.use_user_site and options.target_dir is not None:
+            raise CommandError("Can not combine '--user' and '--target'")
+
+        # Check whether the environment we're installing into is externally
+        # managed, as specified in PEP 668. Specifying --root, --target, or
+        # --prefix disables the check, since there's no reliable way to locate
+        # the EXTERNALLY-MANAGED file for those cases. An exception is also
+        # made specifically for "--dry-run --report" for convenience.
+        installing_into_current_environment = (
+            not (options.dry_run and options.json_report_file)
+            and options.root_path is None
+            and options.target_dir is None
+            and options.prefix_path is None
+        )
+        if (
+            installing_into_current_environment
+            and not options.override_externally_managed
+        ):
+            check_externally_managed()
+
+        upgrade_strategy = "to-satisfy-only"
+        if options.upgrade:
+            upgrade_strategy = options.upgrade_strategy
+
+        cmdoptions.check_dist_restriction(options, check_target=True)
+
+        logger.verbose("Using %s", get_pip_version())
+        options.use_user_site = decide_user_install(
+            options.use_user_site,
+            prefix_path=options.prefix_path,
+            target_dir=options.target_dir,
+            root_path=options.root_path,
+            isolated_mode=options.isolated_mode,
+        )
+
+        target_temp_dir: Optional[TempDirectory] = None
+        target_temp_dir_path: Optional[str] = None
+        if options.target_dir:
+            options.ignore_installed = True
+            options.target_dir = os.path.abspath(options.target_dir)
+            if (
+                # fmt: off
+                os.path.exists(options.target_dir) and
+                not os.path.isdir(options.target_dir)
+                # fmt: on
+            ):
+                raise CommandError(
+                    "Target path exists but is not a directory, will not continue."
+                )
+
+            # Create a target directory for using with the target option
+            target_temp_dir = TempDirectory(kind="target")
+            target_temp_dir_path = target_temp_dir.path
+            self.enter_context(target_temp_dir)
+
+        global_options = options.global_options or []
+
+        session = self.get_default_session(options)
+
+        target_python = make_target_python(options)
+        finder = self._build_package_finder(
+            options=options,
+            session=session,
+            target_python=target_python,
+            ignore_requires_python=options.ignore_requires_python,
+        )
+        build_tracker = self.enter_context(get_build_tracker())
+
+        directory = TempDirectory(
+            delete=not options.no_clean,
+            kind="install",
+            globally_managed=True,
+        )
+
+        try:
+            reqs = self.get_requirements(args, options, finder, session)
+            check_legacy_setup_py_options(options, reqs)
+
+            wheel_cache = WheelCache(options.cache_dir)
+
+            # Only when installing is it permitted to use PEP 660.
+            # In other circumstances (pip wheel, pip download) we generate
+            # regular (i.e. non editable) metadata and wheels.
+            for req in reqs:
+                req.permit_editable_wheels = True
+
+            preparer = self.make_requirement_preparer(
+                temp_build_dir=directory,
+                options=options,
+                build_tracker=build_tracker,
+                session=session,
+                finder=finder,
+                use_user_site=options.use_user_site,
+                verbosity=self.verbosity,
+            )
+            resolver = self.make_resolver(
+                preparer=preparer,
+                finder=finder,
+                options=options,
+                wheel_cache=wheel_cache,
+                use_user_site=options.use_user_site,
+                ignore_installed=options.ignore_installed,
+                ignore_requires_python=options.ignore_requires_python,
+                force_reinstall=options.force_reinstall,
+                upgrade_strategy=upgrade_strategy,
+                use_pep517=options.use_pep517,
+            )
+
+            self.trace_basic_info(finder)
+
+            requirement_set = resolver.resolve(
+                reqs, check_supported_wheels=not options.target_dir
+            )
+
+            if options.json_report_file:
+                report = InstallationReport(requirement_set.requirements_to_install)
+                if options.json_report_file == "-":
+                    print_json(data=report.to_dict())
+                else:
+                    with open(options.json_report_file, "w", encoding="utf-8") as f:
+                        json.dump(report.to_dict(), f, indent=2, ensure_ascii=False)
+
+            if options.dry_run:
+                # In non dry-run mode, the legacy versions and specifiers check
+                # will be done as part of conflict detection.
+                requirement_set.warn_legacy_versions_and_specifiers()
+                would_install_items = sorted(
+                    (r.metadata["name"], r.metadata["version"])
+                    for r in requirement_set.requirements_to_install
+                )
+                if would_install_items:
+                    write_output(
+                        "Would install %s",
+                        " ".join("-".join(item) for item in would_install_items),
+                    )
+                return SUCCESS
+
+            try:
+                pip_req = requirement_set.get_requirement("pip")
+            except KeyError:
+                modifying_pip = False
+            else:
+                # If we're not replacing an already installed pip,
+                # we're not modifying it.
+                modifying_pip = pip_req.satisfied_by is None
+            protect_pip_from_modification_on_windows(modifying_pip=modifying_pip)
+
+            reqs_to_build = [
+                r
+                for r in requirement_set.requirements.values()
+                if should_build_for_install_command(r)
+            ]
+
+            _, build_failures = build(
+                reqs_to_build,
+                wheel_cache=wheel_cache,
+                verify=True,
+                build_options=[],
+                global_options=global_options,
+            )
+
+            if build_failures:
+                raise InstallationError(
+                    "Could not build wheels for {}, which is required to "
+                    "install pyproject.toml-based projects".format(
+                        ", ".join(r.name for r in build_failures)  # type: ignore
+                    )
+                )
+
+            to_install = resolver.get_installation_order(requirement_set)
+
+            # Check for conflicts in the package set we're installing.
+            conflicts: Optional[ConflictDetails] = None
+            should_warn_about_conflicts = (
+                not options.ignore_dependencies and options.warn_about_conflicts
+            )
+            if should_warn_about_conflicts:
+                conflicts = self._determine_conflicts(to_install)
+
+            # Don't warn about script install locations if
+            # --target or --prefix has been specified
+            warn_script_location = options.warn_script_location
+            if options.target_dir or options.prefix_path:
+                warn_script_location = False
+
+            installed = install_given_reqs(
+                to_install,
+                global_options,
+                root=options.root_path,
+                home=target_temp_dir_path,
+                prefix=options.prefix_path,
+                warn_script_location=warn_script_location,
+                use_user_site=options.use_user_site,
+                pycompile=options.compile,
+            )
+
+            lib_locations = get_lib_location_guesses(
+                user=options.use_user_site,
+                home=target_temp_dir_path,
+                root=options.root_path,
+                prefix=options.prefix_path,
+                isolated=options.isolated_mode,
+            )
+            env = get_environment(lib_locations)
+
+            installed.sort(key=operator.attrgetter("name"))
+            items = []
+            for result in installed:
+                item = result.name
+                try:
+                    installed_dist = env.get_distribution(item)
+                    if installed_dist is not None:
+                        item = f"{item}-{installed_dist.version}"
+                except Exception:
+                    pass
+                items.append(item)
+
+            if conflicts is not None:
+                self._warn_about_conflicts(
+                    conflicts,
+                    resolver_variant=self.determine_resolver_variant(options),
+                )
+
+            installed_desc = " ".join(items)
+            if installed_desc:
+                write_output(
+                    "Successfully installed %s",
+                    installed_desc,
+                )
+        except OSError as error:
+            show_traceback = self.verbosity >= 1
+
+            message = create_os_error_message(
+                error,
+                show_traceback,
+                options.use_user_site,
+            )
+            logger.error(message, exc_info=show_traceback)
+
+            return ERROR
+
+        if options.target_dir:
+            assert target_temp_dir
+            self._handle_target_dir(
+                options.target_dir, target_temp_dir, options.upgrade
+            )
+        if options.root_user_action == "warn":
+            warn_if_run_as_root()
+        return SUCCESS
+
+    def _handle_target_dir(
+        self, target_dir: str, target_temp_dir: TempDirectory, upgrade: bool
+    ) -> None:
+        ensure_dir(target_dir)
+
+        # Checking both purelib and platlib directories for installed
+        # packages to be moved to target directory
+        lib_dir_list = []
+
+        # Checking both purelib and platlib directories for installed
+        # packages to be moved to target directory
+        scheme = get_scheme("", home=target_temp_dir.path)
+        purelib_dir = scheme.purelib
+        platlib_dir = scheme.platlib
+        data_dir = scheme.data
+
+        if os.path.exists(purelib_dir):
+            lib_dir_list.append(purelib_dir)
+        if os.path.exists(platlib_dir) and platlib_dir != purelib_dir:
+            lib_dir_list.append(platlib_dir)
+        if os.path.exists(data_dir):
+            lib_dir_list.append(data_dir)
+
+        for lib_dir in lib_dir_list:
+            for item in os.listdir(lib_dir):
+                if lib_dir == data_dir:
+                    ddir = os.path.join(data_dir, item)
+                    if any(s.startswith(ddir) for s in lib_dir_list[:-1]):
+                        continue
+                target_item_dir = os.path.join(target_dir, item)
+                if os.path.exists(target_item_dir):
+                    if not upgrade:
+                        logger.warning(
+                            "Target directory %s already exists. Specify "
+                            "--upgrade to force replacement.",
+                            target_item_dir,
+                        )
+                        continue
+                    if os.path.islink(target_item_dir):
+                        logger.warning(
+                            "Target directory %s already exists and is "
+                            "a link. pip will not automatically replace "
+                            "links, please remove if replacement is "
+                            "desired.",
+                            target_item_dir,
+                        )
+                        continue
+                    if os.path.isdir(target_item_dir):
+                        shutil.rmtree(target_item_dir)
+                    else:
+                        os.remove(target_item_dir)
+
+                shutil.move(os.path.join(lib_dir, item), target_item_dir)
+
+    def _determine_conflicts(
+        self, to_install: List[InstallRequirement]
+    ) -> Optional[ConflictDetails]:
+        try:
+            return check_install_conflicts(to_install)
+        except Exception:
+            logger.exception(
+                "Error while checking for conflicts. Please file an issue on "
+                "pip's issue tracker: https://github.com/pypa/pip/issues/new"
+            )
+            return None
+
+    def _warn_about_conflicts(
+        self, conflict_details: ConflictDetails, resolver_variant: str
+    ) -> None:
+        package_set, (missing, conflicting) = conflict_details
+        if not missing and not conflicting:
+            return
+
+        parts: List[str] = []
+        if resolver_variant == "legacy":
+            parts.append(
+                "pip's legacy dependency resolver does not consider dependency "
+                "conflicts when selecting packages. This behaviour is the "
+                "source of the following dependency conflicts."
+            )
+        else:
+            assert resolver_variant == "resolvelib"
+            parts.append(
+                "pip's dependency resolver does not currently take into account "
+                "all the packages that are installed. This behaviour is the "
+                "source of the following dependency conflicts."
+            )
+
+        # NOTE: There is some duplication here, with commands/check.py
+        for project_name in missing:
+            version = package_set[project_name][0]
+            for dependency in missing[project_name]:
+                message = (
+                    f"{project_name} {version} requires {dependency[1]}, "
+                    "which is not installed."
+                )
+                parts.append(message)
+
+        for project_name in conflicting:
+            version = package_set[project_name][0]
+            for dep_name, dep_version, req in conflicting[project_name]:
+                message = (
+                    "{name} {version} requires {requirement}, but {you} have "
+                    "{dep_name} {dep_version} which is incompatible."
+                ).format(
+                    name=project_name,
+                    version=version,
+                    requirement=req,
+                    dep_name=dep_name,
+                    dep_version=dep_version,
+                    you=("you" if resolver_variant == "resolvelib" else "you'll"),
+                )
+                parts.append(message)
+
+        logger.critical("\n".join(parts))
+
+
+def get_lib_location_guesses(
+    user: bool = False,
+    home: Optional[str] = None,
+    root: Optional[str] = None,
+    isolated: bool = False,
+    prefix: Optional[str] = None,
+) -> List[str]:
+    scheme = get_scheme(
+        "",
+        user=user,
+        home=home,
+        root=root,
+        isolated=isolated,
+        prefix=prefix,
+    )
+    return [scheme.purelib, scheme.platlib]
+
+
+def site_packages_writable(root: Optional[str], isolated: bool) -> bool:
+    return all(
+        test_writable_dir(d)
+        for d in set(get_lib_location_guesses(root=root, isolated=isolated))
+    )
+
+
+def decide_user_install(
+    use_user_site: Optional[bool],
+    prefix_path: Optional[str] = None,
+    target_dir: Optional[str] = None,
+    root_path: Optional[str] = None,
+    isolated_mode: bool = False,
+) -> bool:
+    """Determine whether to do a user install based on the input options.
+
+    If use_user_site is False, no additional checks are done.
+    If use_user_site is True, it is checked for compatibility with other
+    options.
+    If use_user_site is None, the default behaviour depends on the environment,
+    which is provided by the other arguments.
+    """
+    # In some cases (config from tox), use_user_site can be set to an integer
+    # rather than a bool, which 'use_user_site is False' wouldn't catch.
+    if (use_user_site is not None) and (not use_user_site):
+        logger.debug("Non-user install by explicit request")
+        return False
+
+    if use_user_site:
+        if prefix_path:
+            raise CommandError(
+                "Can not combine '--user' and '--prefix' as they imply "
+                "different installation locations"
+            )
+        if virtualenv_no_global():
+            raise InstallationError(
+                "Can not perform a '--user' install. User site-packages "
+                "are not visible in this virtualenv."
+            )
+        logger.debug("User install by explicit request")
+        return True
+
+    # If we are here, user installs have not been explicitly requested/avoided
+    assert use_user_site is None
+
+    # user install incompatible with --prefix/--target
+    if prefix_path or target_dir:
+        logger.debug("Non-user install due to --prefix or --target option")
+        return False
+
+    # If user installs are not enabled, choose a non-user install
+    if not site.ENABLE_USER_SITE:
+        logger.debug("Non-user install because user site-packages disabled")
+        return False
+
+    # If we have permission for a non-user install, do that,
+    # otherwise do a user install.
+    if site_packages_writable(root=root_path, isolated=isolated_mode):
+        logger.debug("Non-user install because site-packages writeable")
+        return False
+
+    logger.info(
+        "Defaulting to user installation because normal site-packages "
+        "is not writeable"
+    )
+    return True
+
+
+def create_os_error_message(
+    error: OSError, show_traceback: bool, using_user_site: bool
+) -> str:
+    """Format an error message for an OSError
+
+    It may occur anytime during the execution of the install command.
+    """
+    parts = []
+
+    # Mention the error if we are not going to show a traceback
+    parts.append("Could not install packages due to an OSError")
+    if not show_traceback:
+        parts.append(": ")
+        parts.append(str(error))
+    else:
+        parts.append(".")
+
+    # Spilt the error indication from a helper message (if any)
+    parts[-1] += "\n"
+
+    # Suggest useful actions to the user:
+    #  (1) using user site-packages or (2) verifying the permissions
+    if error.errno == errno.EACCES:
+        user_option_part = "Consider using the `--user` option"
+        permissions_part = "Check the permissions"
+
+        if not running_under_virtualenv() and not using_user_site:
+            parts.extend(
+                [
+                    user_option_part,
+                    " or ",
+                    permissions_part.lower(),
+                ]
+            )
+        else:
+            parts.append(permissions_part)
+        parts.append(".\n")
+
+    # Suggest the user to enable Long Paths if path length is
+    # more than 260
+    if (
+        WINDOWS
+        and error.errno == errno.ENOENT
+        and error.filename
+        and len(error.filename) > 260
+    ):
+        parts.append(
+            "HINT: This error might have occurred since "
+            "this system does not have Windows Long Path "
+            "support enabled. You can find information on "
+            "how to enable this at "
+            "https://pip.pypa.io/warnings/enable-long-paths\n"
+        )
+
+    return "".join(parts).strip() + "\n"

galaxy/lib/python3.12/site-packages/pip/_internal/commands/list.py

@@ -0,0 +1,370 @@
+import json
+import logging
+from optparse import Values
+from typing import TYPE_CHECKING, Generator, List, Optional, Sequence, Tuple, cast
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.req_command import IndexGroupCommand
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.exceptions import CommandError
+from pip._internal.index.collector import LinkCollector
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.metadata import BaseDistribution, get_environment
+from pip._internal.models.selection_prefs import SelectionPreferences
+from pip._internal.network.session import PipSession
+from pip._internal.utils.compat import stdlib_pkgs
+from pip._internal.utils.misc import tabulate, write_output
+
+if TYPE_CHECKING:
+    from pip._internal.metadata.base import DistributionVersion
+
+    class _DistWithLatestInfo(BaseDistribution):
+        """Give the distribution object a couple of extra fields.
+
+        These will be populated during ``get_outdated()``. This is dirty but
+        makes the rest of the code much cleaner.
+        """
+
+        latest_version: DistributionVersion
+        latest_filetype: str
+
+    _ProcessedDists = Sequence[_DistWithLatestInfo]
+
+
+from pip._vendor.packaging.version import parse
+
+logger = logging.getLogger(__name__)
+
+
+class ListCommand(IndexGroupCommand):
+    """
+    List installed packages, including editables.
+
+    Packages are listed in a case-insensitive sorted order.
+    """
+
+    ignore_require_venv = True
+    usage = """
+      %prog [options]"""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-o",
+            "--outdated",
+            action="store_true",
+            default=False,
+            help="List outdated packages",
+        )
+        self.cmd_opts.add_option(
+            "-u",
+            "--uptodate",
+            action="store_true",
+            default=False,
+            help="List uptodate packages",
+        )
+        self.cmd_opts.add_option(
+            "-e",
+            "--editable",
+            action="store_true",
+            default=False,
+            help="List editable projects.",
+        )
+        self.cmd_opts.add_option(
+            "-l",
+            "--local",
+            action="store_true",
+            default=False,
+            help=(
+                "If in a virtualenv that has global access, do not list "
+                "globally-installed packages."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "--user",
+            dest="user",
+            action="store_true",
+            default=False,
+            help="Only output packages installed in user-site.",
+        )
+        self.cmd_opts.add_option(cmdoptions.list_path())
+        self.cmd_opts.add_option(
+            "--pre",
+            action="store_true",
+            default=False,
+            help=(
+                "Include pre-release and development versions. By default, "
+                "pip only finds stable versions."
+            ),
+        )
+
+        self.cmd_opts.add_option(
+            "--format",
+            action="store",
+            dest="list_format",
+            default="columns",
+            choices=("columns", "freeze", "json"),
+            help=(
+                "Select the output format among: columns (default), freeze, or json. "
+                "The 'freeze' format cannot be used with the --outdated option."
+            ),
+        )
+
+        self.cmd_opts.add_option(
+            "--not-required",
+            action="store_true",
+            dest="not_required",
+            help="List packages that are not dependencies of installed packages.",
+        )
+
+        self.cmd_opts.add_option(
+            "--exclude-editable",
+            action="store_false",
+            dest="include_editable",
+            help="Exclude editable package from output.",
+        )
+        self.cmd_opts.add_option(
+            "--include-editable",
+            action="store_true",
+            dest="include_editable",
+            help="Include editable package from output.",
+            default=True,
+        )
+        self.cmd_opts.add_option(cmdoptions.list_exclude())
+        index_opts = cmdoptions.make_option_group(cmdoptions.index_group, self.parser)
+
+        self.parser.insert_option_group(0, index_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def _build_package_finder(
+        self, options: Values, session: PipSession
+    ) -> PackageFinder:
+        """
+        Create a package finder appropriate to this list command.
+        """
+        link_collector = LinkCollector.create(session, options=options)
+
+        # Pass allow_yanked=False to ignore yanked versions.
+        selection_prefs = SelectionPreferences(
+            allow_yanked=False,
+            allow_all_prereleases=options.pre,
+        )
+
+        return PackageFinder.create(
+            link_collector=link_collector,
+            selection_prefs=selection_prefs,
+        )
+
+    def run(self, options: Values, args: List[str]) -> int:
+        if options.outdated and options.uptodate:
+            raise CommandError("Options --outdated and --uptodate cannot be combined.")
+
+        if options.outdated and options.list_format == "freeze":
+            raise CommandError(
+                "List format 'freeze' cannot be used with the --outdated option."
+            )
+
+        cmdoptions.check_list_path_option(options)
+
+        skip = set(stdlib_pkgs)
+        if options.excludes:
+            skip.update(canonicalize_name(n) for n in options.excludes)
+
+        packages: "_ProcessedDists" = [
+            cast("_DistWithLatestInfo", d)
+            for d in get_environment(options.path).iter_installed_distributions(
+                local_only=options.local,
+                user_only=options.user,
+                editables_only=options.editable,
+                include_editables=options.include_editable,
+                skip=skip,
+            )
+        ]
+
+        # get_not_required must be called firstly in order to find and
+        # filter out all dependencies correctly. Otherwise a package
+        # can't be identified as requirement because some parent packages
+        # could be filtered out before.
+        if options.not_required:
+            packages = self.get_not_required(packages, options)
+
+        if options.outdated:
+            packages = self.get_outdated(packages, options)
+        elif options.uptodate:
+            packages = self.get_uptodate(packages, options)
+
+        self.output_package_listing(packages, options)
+        return SUCCESS
+
+    def get_outdated(
+        self, packages: "_ProcessedDists", options: Values
+    ) -> "_ProcessedDists":
+        return [
+            dist
+            for dist in self.iter_packages_latest_infos(packages, options)
+            if parse(str(dist.latest_version)) > parse(str(dist.version))
+        ]
+
+    def get_uptodate(
+        self, packages: "_ProcessedDists", options: Values
+    ) -> "_ProcessedDists":
+        return [
+            dist
+            for dist in self.iter_packages_latest_infos(packages, options)
+            if parse(str(dist.latest_version)) == parse(str(dist.version))
+        ]
+
+    def get_not_required(
+        self, packages: "_ProcessedDists", options: Values
+    ) -> "_ProcessedDists":
+        dep_keys = {
+            canonicalize_name(dep.name)
+            for dist in packages
+            for dep in (dist.iter_dependencies() or ())
+        }
+
+        # Create a set to remove duplicate packages, and cast it to a list
+        # to keep the return type consistent with get_outdated and
+        # get_uptodate
+        return list({pkg for pkg in packages if pkg.canonical_name not in dep_keys})
+
+    def iter_packages_latest_infos(
+        self, packages: "_ProcessedDists", options: Values
+    ) -> Generator["_DistWithLatestInfo", None, None]:
+        with self._build_session(options) as session:
+            finder = self._build_package_finder(options, session)
+
+            def latest_info(
+                dist: "_DistWithLatestInfo",
+            ) -> Optional["_DistWithLatestInfo"]:
+                all_candidates = finder.find_all_candidates(dist.canonical_name)
+                if not options.pre:
+                    # Remove prereleases
+                    all_candidates = [
+                        candidate
+                        for candidate in all_candidates
+                        if not candidate.version.is_prerelease
+                    ]
+
+                evaluator = finder.make_candidate_evaluator(
+                    project_name=dist.canonical_name,
+                )
+                best_candidate = evaluator.sort_best_candidate(all_candidates)
+                if best_candidate is None:
+                    return None
+
+                remote_version = best_candidate.version
+                if best_candidate.link.is_wheel:
+                    typ = "wheel"
+                else:
+                    typ = "sdist"
+                dist.latest_version = remote_version
+                dist.latest_filetype = typ
+                return dist
+
+            for dist in map(latest_info, packages):
+                if dist is not None:
+                    yield dist
+
+    def output_package_listing(
+        self, packages: "_ProcessedDists", options: Values
+    ) -> None:
+        packages = sorted(
+            packages,
+            key=lambda dist: dist.canonical_name,
+        )
+        if options.list_format == "columns" and packages:
+            data, header = format_for_columns(packages, options)
+            self.output_package_listing_columns(data, header)
+        elif options.list_format == "freeze":
+            for dist in packages:
+                if options.verbose >= 1:
+                    write_output(
+                        "%s==%s (%s)", dist.raw_name, dist.version, dist.location
+                    )
+                else:
+                    write_output("%s==%s", dist.raw_name, dist.version)
+        elif options.list_format == "json":
+            write_output(format_for_json(packages, options))
+
+    def output_package_listing_columns(
+        self, data: List[List[str]], header: List[str]
+    ) -> None:
+        # insert the header first: we need to know the size of column names
+        if len(data) > 0:
+            data.insert(0, header)
+
+        pkg_strings, sizes = tabulate(data)
+
+        # Create and add a separator.
+        if len(data) > 0:
+            pkg_strings.insert(1, " ".join("-" * x for x in sizes))
+
+        for val in pkg_strings:
+            write_output(val)
+
+
+def format_for_columns(
+    pkgs: "_ProcessedDists", options: Values
+) -> Tuple[List[List[str]], List[str]]:
+    """
+    Convert the package data into something usable
+    by output_package_listing_columns.
+    """
+    header = ["Package", "Version"]
+
+    running_outdated = options.outdated
+    if running_outdated:
+        header.extend(["Latest", "Type"])
+
+    has_editables = any(x.editable for x in pkgs)
+    if has_editables:
+        header.append("Editable project location")
+
+    if options.verbose >= 1:
+        header.append("Location")
+    if options.verbose >= 1:
+        header.append("Installer")
+
+    data = []
+    for proj in pkgs:
+        # if we're working on the 'outdated' list, separate out the
+        # latest_version and type
+        row = [proj.raw_name, str(proj.version)]
+
+        if running_outdated:
+            row.append(str(proj.latest_version))
+            row.append(proj.latest_filetype)
+
+        if has_editables:
+            row.append(proj.editable_project_location or "")
+
+        if options.verbose >= 1:
+            row.append(proj.location or "")
+        if options.verbose >= 1:
+            row.append(proj.installer)
+
+        data.append(row)
+
+    return data, header
+
+
+def format_for_json(packages: "_ProcessedDists", options: Values) -> str:
+    data = []
+    for dist in packages:
+        info = {
+            "name": dist.raw_name,
+            "version": str(dist.version),
+        }
+        if options.verbose >= 1:
+            info["location"] = dist.location or ""
+            info["installer"] = dist.installer
+        if options.outdated:
+            info["latest_version"] = str(dist.latest_version)
+            info["latest_filetype"] = dist.latest_filetype
+        editable_project_location = dist.editable_project_location
+        if editable_project_location:
+            info["editable_project_location"] = editable_project_location
+        data.append(info)
+    return json.dumps(data)

galaxy/lib/python3.12/site-packages/pip/_internal/commands/search.py

@@ -0,0 +1,174 @@
+import logging
+import shutil
+import sys
+import textwrap
+import xmlrpc.client
+from collections import OrderedDict
+from optparse import Values
+from typing import TYPE_CHECKING, Dict, List, Optional
+
+from pip._vendor.packaging.version import parse as parse_version
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.req_command import SessionCommandMixin
+from pip._internal.cli.status_codes import NO_MATCHES_FOUND, SUCCESS
+from pip._internal.exceptions import CommandError
+from pip._internal.metadata import get_default_environment
+from pip._internal.models.index import PyPI
+from pip._internal.network.xmlrpc import PipXmlrpcTransport
+from pip._internal.utils.logging import indent_log
+from pip._internal.utils.misc import write_output
+
+if TYPE_CHECKING:
+    from typing import TypedDict
+
+    class TransformedHit(TypedDict):
+        name: str
+        summary: str
+        versions: List[str]
+
+
+logger = logging.getLogger(__name__)
+
+
+class SearchCommand(Command, SessionCommandMixin):
+    """Search for PyPI packages whose name or summary contains <query>."""
+
+    usage = """
+      %prog [options] <query>"""
+    ignore_require_venv = True
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-i",
+            "--index",
+            dest="index",
+            metavar="URL",
+            default=PyPI.pypi_url,
+            help="Base URL of Python Package Index (default %default)",
+        )
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        if not args:
+            raise CommandError("Missing required argument (search query).")
+        query = args
+        pypi_hits = self.search(query, options)
+        hits = transform_hits(pypi_hits)
+
+        terminal_width = None
+        if sys.stdout.isatty():
+            terminal_width = shutil.get_terminal_size()[0]
+
+        print_results(hits, terminal_width=terminal_width)
+        if pypi_hits:
+            return SUCCESS
+        return NO_MATCHES_FOUND
+
+    def search(self, query: List[str], options: Values) -> List[Dict[str, str]]:
+        index_url = options.index
+
+        session = self.get_default_session(options)
+
+        transport = PipXmlrpcTransport(index_url, session)
+        pypi = xmlrpc.client.ServerProxy(index_url, transport)
+        try:
+            hits = pypi.search({"name": query, "summary": query}, "or")
+        except xmlrpc.client.Fault as fault:
+            message = "XMLRPC request failed [code: {code}]\n{string}".format(
+                code=fault.faultCode,
+                string=fault.faultString,
+            )
+            raise CommandError(message)
+        assert isinstance(hits, list)
+        return hits
+
+
+def transform_hits(hits: List[Dict[str, str]]) -> List["TransformedHit"]:
+    """
+    The list from pypi is really a list of versions. We want a list of
+    packages with the list of versions stored inline. This converts the
+    list from pypi into one we can use.
+    """
+    packages: Dict[str, "TransformedHit"] = OrderedDict()
+    for hit in hits:
+        name = hit["name"]
+        summary = hit["summary"]
+        version = hit["version"]
+
+        if name not in packages.keys():
+            packages[name] = {
+                "name": name,
+                "summary": summary,
+                "versions": [version],
+            }
+        else:
+            packages[name]["versions"].append(version)
+
+            # if this is the highest version, replace summary and score
+            if version == highest_version(packages[name]["versions"]):
+                packages[name]["summary"] = summary
+
+    return list(packages.values())
+
+
+def print_dist_installation_info(name: str, latest: str) -> None:
+    env = get_default_environment()
+    dist = env.get_distribution(name)
+    if dist is not None:
+        with indent_log():
+            if dist.version == latest:
+                write_output("INSTALLED: %s (latest)", dist.version)
+            else:
+                write_output("INSTALLED: %s", dist.version)
+                if parse_version(latest).pre:
+                    write_output(
+                        "LATEST:    %s (pre-release; install"
+                        " with `pip install --pre`)",
+                        latest,
+                    )
+                else:
+                    write_output("LATEST:    %s", latest)
+
+
+def print_results(
+    hits: List["TransformedHit"],
+    name_column_width: Optional[int] = None,
+    terminal_width: Optional[int] = None,
+) -> None:
+    if not hits:
+        return
+    if name_column_width is None:
+        name_column_width = (
+            max(
+                [
+                    len(hit["name"]) + len(highest_version(hit.get("versions", ["-"])))
+                    for hit in hits
+                ]
+            )
+            + 4
+        )
+
+    for hit in hits:
+        name = hit["name"]
+        summary = hit["summary"] or ""
+        latest = highest_version(hit.get("versions", ["-"]))
+        if terminal_width is not None:
+            target_width = terminal_width - name_column_width - 5
+            if target_width > 10:
+                # wrap and indent summary to fit terminal
+                summary_lines = textwrap.wrap(summary, target_width)
+                summary = ("\n" + " " * (name_column_width + 3)).join(summary_lines)
+
+        name_latest = f"{name} ({latest})"
+        line = f"{name_latest:{name_column_width}} - {summary}"
+        try:
+            write_output(line)
+            print_dist_installation_info(name, latest)
+        except UnicodeEncodeError:
+            pass
+
+
+def highest_version(versions: List[str]) -> str:
+    return max(versions, key=parse_version)

galaxy/lib/python3.12/site-packages/pip/_internal/commands/show.py

@@ -0,0 +1,189 @@
+import logging
+from optparse import Values
+from typing import Generator, Iterable, Iterator, List, NamedTuple, Optional
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.status_codes import ERROR, SUCCESS
+from pip._internal.metadata import BaseDistribution, get_default_environment
+from pip._internal.utils.misc import write_output
+
+logger = logging.getLogger(__name__)
+
+
+class ShowCommand(Command):
+    """
+    Show information about one or more installed packages.
+
+    The output is in RFC-compliant mail header format.
+    """
+
+    usage = """
+      %prog [options] <package> ..."""
+    ignore_require_venv = True
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-f",
+            "--files",
+            dest="files",
+            action="store_true",
+            default=False,
+            help="Show the full list of installed files for each package.",
+        )
+
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        if not args:
+            logger.warning("ERROR: Please provide a package name or names.")
+            return ERROR
+        query = args
+
+        results = search_packages_info(query)
+        if not print_results(
+            results, list_files=options.files, verbose=options.verbose
+        ):
+            return ERROR
+        return SUCCESS
+
+
+class _PackageInfo(NamedTuple):
+    name: str
+    version: str
+    location: str
+    editable_project_location: Optional[str]
+    requires: List[str]
+    required_by: List[str]
+    installer: str
+    metadata_version: str
+    classifiers: List[str]
+    summary: str
+    homepage: str
+    project_urls: List[str]
+    author: str
+    author_email: str
+    license: str
+    entry_points: List[str]
+    files: Optional[List[str]]
+
+
+def search_packages_info(query: List[str]) -> Generator[_PackageInfo, None, None]:
+    """
+    Gather details from installed distributions. Print distribution name,
+    version, location, and installed files. Installed files requires a
+    pip generated 'installed-files.txt' in the distributions '.egg-info'
+    directory.
+    """
+    env = get_default_environment()
+
+    installed = {dist.canonical_name: dist for dist in env.iter_all_distributions()}
+    query_names = [canonicalize_name(name) for name in query]
+    missing = sorted(
+        [name for name, pkg in zip(query, query_names) if pkg not in installed]
+    )
+    if missing:
+        logger.warning("Package(s) not found: %s", ", ".join(missing))
+
+    def _get_requiring_packages(current_dist: BaseDistribution) -> Iterator[str]:
+        return (
+            dist.metadata["Name"] or "UNKNOWN"
+            for dist in installed.values()
+            if current_dist.canonical_name
+            in {canonicalize_name(d.name) for d in dist.iter_dependencies()}
+        )
+
+    for query_name in query_names:
+        try:
+            dist = installed[query_name]
+        except KeyError:
+            continue
+
+        requires = sorted((req.name for req in dist.iter_dependencies()), key=str.lower)
+        required_by = sorted(_get_requiring_packages(dist), key=str.lower)
+
+        try:
+            entry_points_text = dist.read_text("entry_points.txt")
+            entry_points = entry_points_text.splitlines(keepends=False)
+        except FileNotFoundError:
+            entry_points = []
+
+        files_iter = dist.iter_declared_entries()
+        if files_iter is None:
+            files: Optional[List[str]] = None
+        else:
+            files = sorted(files_iter)
+
+        metadata = dist.metadata
+
+        yield _PackageInfo(
+            name=dist.raw_name,
+            version=str(dist.version),
+            location=dist.location or "",
+            editable_project_location=dist.editable_project_location,
+            requires=requires,
+            required_by=required_by,
+            installer=dist.installer,
+            metadata_version=dist.metadata_version or "",
+            classifiers=metadata.get_all("Classifier", []),
+            summary=metadata.get("Summary", ""),
+            homepage=metadata.get("Home-page", ""),
+            project_urls=metadata.get_all("Project-URL", []),
+            author=metadata.get("Author", ""),
+            author_email=metadata.get("Author-email", ""),
+            license=metadata.get("License", ""),
+            entry_points=entry_points,
+            files=files,
+        )
+
+
+def print_results(
+    distributions: Iterable[_PackageInfo],
+    list_files: bool,
+    verbose: bool,
+) -> bool:
+    """
+    Print the information from installed distributions found.
+    """
+    results_printed = False
+    for i, dist in enumerate(distributions):
+        results_printed = True
+        if i > 0:
+            write_output("---")
+
+        write_output("Name: %s", dist.name)
+        write_output("Version: %s", dist.version)
+        write_output("Summary: %s", dist.summary)
+        write_output("Home-page: %s", dist.homepage)
+        write_output("Author: %s", dist.author)
+        write_output("Author-email: %s", dist.author_email)
+        write_output("License: %s", dist.license)
+        write_output("Location: %s", dist.location)
+        if dist.editable_project_location is not None:
+            write_output(
+                "Editable project location: %s", dist.editable_project_location
+            )
+        write_output("Requires: %s", ", ".join(dist.requires))
+        write_output("Required-by: %s", ", ".join(dist.required_by))
+
+        if verbose:
+            write_output("Metadata-Version: %s", dist.metadata_version)
+            write_output("Installer: %s", dist.installer)
+            write_output("Classifiers:")
+            for classifier in dist.classifiers:
+                write_output("  %s", classifier)
+            write_output("Entry-points:")
+            for entry in dist.entry_points:
+                write_output("  %s", entry.strip())
+            write_output("Project-URLs:")
+            for project_url in dist.project_urls:
+                write_output("  %s", project_url)
+        if list_files:
+            write_output("Files:")
+            if dist.files is None:
+                write_output("Cannot locate RECORD or installed-files.txt")
+            else:
+                for line in dist.files:
+                    write_output("  %s", line.strip())
+    return results_printed

galaxy/lib/python3.12/site-packages/pip/_internal/commands/uninstall.py

@@ -0,0 +1,113 @@
+import logging
+from optparse import Values
+from typing import List
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.base_command import Command
+from pip._internal.cli.req_command import SessionCommandMixin, warn_if_run_as_root
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.exceptions import InstallationError
+from pip._internal.req import parse_requirements
+from pip._internal.req.constructors import (
+    install_req_from_line,
+    install_req_from_parsed_requirement,
+)
+from pip._internal.utils.misc import (
+    check_externally_managed,
+    protect_pip_from_modification_on_windows,
+)
+
+logger = logging.getLogger(__name__)
+
+
+class UninstallCommand(Command, SessionCommandMixin):
+    """
+    Uninstall packages.
+
+    pip is able to uninstall most installed packages. Known exceptions are:
+
+    - Pure distutils packages installed with ``python setup.py install``, which
+      leave behind no metadata to determine what files were installed.
+    - Script wrappers installed by ``python setup.py develop``.
+    """
+
+    usage = """
+      %prog [options] <package> ...
+      %prog [options] -r <requirements file> ..."""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-r",
+            "--requirement",
+            dest="requirements",
+            action="append",
+            default=[],
+            metavar="file",
+            help=(
+                "Uninstall all the packages listed in the given requirements "
+                "file.  This option can be used multiple times."
+            ),
+        )
+        self.cmd_opts.add_option(
+            "-y",
+            "--yes",
+            dest="yes",
+            action="store_true",
+            help="Don't ask for confirmation of uninstall deletions.",
+        )
+        self.cmd_opts.add_option(cmdoptions.root_user_action())
+        self.cmd_opts.add_option(cmdoptions.override_externally_managed())
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    def run(self, options: Values, args: List[str]) -> int:
+        session = self.get_default_session(options)
+
+        reqs_to_uninstall = {}
+        for name in args:
+            req = install_req_from_line(
+                name,
+                isolated=options.isolated_mode,
+            )
+            if req.name:
+                reqs_to_uninstall[canonicalize_name(req.name)] = req
+            else:
+                logger.warning(
+                    "Invalid requirement: %r ignored -"
+                    " the uninstall command expects named"
+                    " requirements.",
+                    name,
+                )
+        for filename in options.requirements:
+            for parsed_req in parse_requirements(
+                filename, options=options, session=session
+            ):
+                req = install_req_from_parsed_requirement(
+                    parsed_req, isolated=options.isolated_mode
+                )
+                if req.name:
+                    reqs_to_uninstall[canonicalize_name(req.name)] = req
+        if not reqs_to_uninstall:
+            raise InstallationError(
+                f"You must give at least one requirement to {self.name} (see "
+                f'"pip help {self.name}")'
+            )
+
+        if not options.override_externally_managed:
+            check_externally_managed()
+
+        protect_pip_from_modification_on_windows(
+            modifying_pip="pip" in reqs_to_uninstall
+        )
+
+        for req in reqs_to_uninstall.values():
+            uninstall_pathset = req.uninstall(
+                auto_confirm=options.yes,
+                verbose=self.verbosity > 0,
+            )
+            if uninstall_pathset:
+                uninstall_pathset.commit()
+        if options.root_user_action == "warn":
+            warn_if_run_as_root()
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/commands/wheel.py

@@ -0,0 +1,183 @@
+import logging
+import os
+import shutil
+from optparse import Values
+from typing import List
+
+from pip._internal.cache import WheelCache
+from pip._internal.cli import cmdoptions
+from pip._internal.cli.req_command import RequirementCommand, with_cleanup
+from pip._internal.cli.status_codes import SUCCESS
+from pip._internal.exceptions import CommandError
+from pip._internal.operations.build.build_tracker import get_build_tracker
+from pip._internal.req.req_install import (
+    InstallRequirement,
+    check_legacy_setup_py_options,
+)
+from pip._internal.utils.misc import ensure_dir, normalize_path
+from pip._internal.utils.temp_dir import TempDirectory
+from pip._internal.wheel_builder import build, should_build_for_wheel_command
+
+logger = logging.getLogger(__name__)
+
+
+class WheelCommand(RequirementCommand):
+    """
+    Build Wheel archives for your requirements and dependencies.
+
+    Wheel is a built-package format, and offers the advantage of not
+    recompiling your software during every install. For more details, see the
+    wheel docs: https://wheel.readthedocs.io/en/latest/
+
+    'pip wheel' uses the build system interface as described here:
+    https://pip.pypa.io/en/stable/reference/build-system/
+
+    """
+
+    usage = """
+      %prog [options] <requirement specifier> ...
+      %prog [options] -r <requirements file> ...
+      %prog [options] [-e] <vcs project url> ...
+      %prog [options] [-e] <local project path> ...
+      %prog [options] <archive url/path> ..."""
+
+    def add_options(self) -> None:
+        self.cmd_opts.add_option(
+            "-w",
+            "--wheel-dir",
+            dest="wheel_dir",
+            metavar="dir",
+            default=os.curdir,
+            help=(
+                "Build wheels into <dir>, where the default is the "
+                "current working directory."
+            ),
+        )
+        self.cmd_opts.add_option(cmdoptions.no_binary())
+        self.cmd_opts.add_option(cmdoptions.only_binary())
+        self.cmd_opts.add_option(cmdoptions.prefer_binary())
+        self.cmd_opts.add_option(cmdoptions.no_build_isolation())
+        self.cmd_opts.add_option(cmdoptions.use_pep517())
+        self.cmd_opts.add_option(cmdoptions.no_use_pep517())
+        self.cmd_opts.add_option(cmdoptions.check_build_deps())
+        self.cmd_opts.add_option(cmdoptions.constraints())
+        self.cmd_opts.add_option(cmdoptions.editable())
+        self.cmd_opts.add_option(cmdoptions.requirements())
+        self.cmd_opts.add_option(cmdoptions.src())
+        self.cmd_opts.add_option(cmdoptions.ignore_requires_python())
+        self.cmd_opts.add_option(cmdoptions.no_deps())
+        self.cmd_opts.add_option(cmdoptions.progress_bar())
+
+        self.cmd_opts.add_option(
+            "--no-verify",
+            dest="no_verify",
+            action="store_true",
+            default=False,
+            help="Don't verify if built wheel is valid.",
+        )
+
+        self.cmd_opts.add_option(cmdoptions.config_settings())
+        self.cmd_opts.add_option(cmdoptions.build_options())
+        self.cmd_opts.add_option(cmdoptions.global_options())
+
+        self.cmd_opts.add_option(
+            "--pre",
+            action="store_true",
+            default=False,
+            help=(
+                "Include pre-release and development versions. By default, "
+                "pip only finds stable versions."
+            ),
+        )
+
+        self.cmd_opts.add_option(cmdoptions.require_hashes())
+
+        index_opts = cmdoptions.make_option_group(
+            cmdoptions.index_group,
+            self.parser,
+        )
+
+        self.parser.insert_option_group(0, index_opts)
+        self.parser.insert_option_group(0, self.cmd_opts)
+
+    @with_cleanup
+    def run(self, options: Values, args: List[str]) -> int:
+        session = self.get_default_session(options)
+
+        finder = self._build_package_finder(options, session)
+
+        options.wheel_dir = normalize_path(options.wheel_dir)
+        ensure_dir(options.wheel_dir)
+
+        build_tracker = self.enter_context(get_build_tracker())
+
+        directory = TempDirectory(
+            delete=not options.no_clean,
+            kind="wheel",
+            globally_managed=True,
+        )
+
+        reqs = self.get_requirements(args, options, finder, session)
+        check_legacy_setup_py_options(options, reqs)
+
+        wheel_cache = WheelCache(options.cache_dir)
+
+        preparer = self.make_requirement_preparer(
+            temp_build_dir=directory,
+            options=options,
+            build_tracker=build_tracker,
+            session=session,
+            finder=finder,
+            download_dir=options.wheel_dir,
+            use_user_site=False,
+            verbosity=self.verbosity,
+        )
+
+        resolver = self.make_resolver(
+            preparer=preparer,
+            finder=finder,
+            options=options,
+            wheel_cache=wheel_cache,
+            ignore_requires_python=options.ignore_requires_python,
+            use_pep517=options.use_pep517,
+        )
+
+        self.trace_basic_info(finder)
+
+        requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
+
+        reqs_to_build: List[InstallRequirement] = []
+        for req in requirement_set.requirements.values():
+            if req.is_wheel:
+                preparer.save_linked_requirement(req)
+            elif should_build_for_wheel_command(req):
+                reqs_to_build.append(req)
+
+        preparer.prepare_linked_requirements_more(requirement_set.requirements.values())
+        requirement_set.warn_legacy_versions_and_specifiers()
+
+        # build wheels
+        build_successes, build_failures = build(
+            reqs_to_build,
+            wheel_cache=wheel_cache,
+            verify=(not options.no_verify),
+            build_options=options.build_options or [],
+            global_options=options.global_options or [],
+        )
+        for req in build_successes:
+            assert req.link and req.link.is_wheel
+            assert req.local_file_path
+            # copy from cache to target directory
+            try:
+                shutil.copy(req.local_file_path, options.wheel_dir)
+            except OSError as e:
+                logger.warning(
+                    "Building wheel for %s failed: %s",
+                    req.name,
+                    e,
+                )
+                build_failures.append(req)
+        if len(build_failures) != 0:
+            raise CommandError("Failed to build one or more wheels")
+
+        return SUCCESS

galaxy/lib/python3.12/site-packages/pip/_internal/configuration.py

@@ -0,0 +1,383 @@
+"""Configuration management setup
+
+Some terminology:
+- name
+  As written in config files.
+- value
+  Value associated with a name
+- key
+  Name combined with it's section (section.name)
+- variant
+  A single word describing where the configuration key-value pair came from
+"""
+
+import configparser
+import locale
+import os
+import sys
+from typing import Any, Dict, Iterable, List, NewType, Optional, Tuple
+
+from pip._internal.exceptions import (
+    ConfigurationError,
+    ConfigurationFileCouldNotBeLoaded,
+)
+from pip._internal.utils import appdirs
+from pip._internal.utils.compat import WINDOWS
+from pip._internal.utils.logging import getLogger
+from pip._internal.utils.misc import ensure_dir, enum
+
+RawConfigParser = configparser.RawConfigParser  # Shorthand
+Kind = NewType("Kind", str)
+
+CONFIG_BASENAME = "pip.ini" if WINDOWS else "pip.conf"
+ENV_NAMES_IGNORED = "version", "help"
+
+# The kinds of configurations there are.
+kinds = enum(
+    USER="user",  # User Specific
+    GLOBAL="global",  # System Wide
+    SITE="site",  # [Virtual] Environment Specific
+    ENV="env",  # from PIP_CONFIG_FILE
+    ENV_VAR="env-var",  # from Environment Variables
+)
+OVERRIDE_ORDER = kinds.GLOBAL, kinds.USER, kinds.SITE, kinds.ENV, kinds.ENV_VAR
+VALID_LOAD_ONLY = kinds.USER, kinds.GLOBAL, kinds.SITE
+
+logger = getLogger(__name__)
+
+
+# NOTE: Maybe use the optionx attribute to normalize keynames.
+def _normalize_name(name: str) -> str:
+    """Make a name consistent regardless of source (environment or file)"""
+    name = name.lower().replace("_", "-")
+    if name.startswith("--"):
+        name = name[2:]  # only prefer long opts
+    return name
+
+
+def _disassemble_key(name: str) -> List[str]:
+    if "." not in name:
+        error_message = (
+            "Key does not contain dot separated section and key. "
+            f"Perhaps you wanted to use 'global.{name}' instead?"
+        )
+        raise ConfigurationError(error_message)
+    return name.split(".", 1)
+
+
+def get_configuration_files() -> Dict[Kind, List[str]]:
+    global_config_files = [
+        os.path.join(path, CONFIG_BASENAME) for path in appdirs.site_config_dirs("pip")
+    ]
+
+    site_config_file = os.path.join(sys.prefix, CONFIG_BASENAME)
+    legacy_config_file = os.path.join(
+        os.path.expanduser("~"),
+        "pip" if WINDOWS else ".pip",
+        CONFIG_BASENAME,
+    )
+    new_config_file = os.path.join(appdirs.user_config_dir("pip"), CONFIG_BASENAME)
+    return {
+        kinds.GLOBAL: global_config_files,
+        kinds.SITE: [site_config_file],
+        kinds.USER: [legacy_config_file, new_config_file],
+    }
+
+
+class Configuration:
+    """Handles management of configuration.
+
+    Provides an interface to accessing and managing configuration files.
+
+    This class converts provides an API that takes "section.key-name" style
+    keys and stores the value associated with it as "key-name" under the
+    section "section".
+
+    This allows for a clean interface wherein the both the section and the
+    key-name are preserved in an easy to manage form in the configuration files
+    and the data stored is also nice.
+    """
+
+    def __init__(self, isolated: bool, load_only: Optional[Kind] = None) -> None:
+        super().__init__()
+
+        if load_only is not None and load_only not in VALID_LOAD_ONLY:
+            raise ConfigurationError(
+                "Got invalid value for load_only - should be one of {}".format(
+                    ", ".join(map(repr, VALID_LOAD_ONLY))
+                )
+            )
+        self.isolated = isolated
+        self.load_only = load_only
+
+        # Because we keep track of where we got the data from
+        self._parsers: Dict[Kind, List[Tuple[str, RawConfigParser]]] = {
+            variant: [] for variant in OVERRIDE_ORDER
+        }
+        self._config: Dict[Kind, Dict[str, Any]] = {
+            variant: {} for variant in OVERRIDE_ORDER
+        }
+        self._modified_parsers: List[Tuple[str, RawConfigParser]] = []
+
+    def load(self) -> None:
+        """Loads configuration from configuration files and environment"""
+        self._load_config_files()
+        if not self.isolated:
+            self._load_environment_vars()
+
+    def get_file_to_edit(self) -> Optional[str]:
+        """Returns the file with highest priority in configuration"""
+        assert self.load_only is not None, "Need to be specified a file to be editing"
+
+        try:
+            return self._get_parser_to_modify()[0]
+        except IndexError:
+            return None
+
+    def items(self) -> Iterable[Tuple[str, Any]]:
+        """Returns key-value pairs like dict.items() representing the loaded
+        configuration
+        """
+        return self._dictionary.items()
+
+    def get_value(self, key: str) -> Any:
+        """Get a value from the configuration."""
+        orig_key = key
+        key = _normalize_name(key)
+        try:
+            return self._dictionary[key]
+        except KeyError:
+            # disassembling triggers a more useful error message than simply
+            # "No such key" in the case that the key isn't in the form command.option
+            _disassemble_key(key)
+            raise ConfigurationError(f"No such key - {orig_key}")
+
+    def set_value(self, key: str, value: Any) -> None:
+        """Modify a value in the configuration."""
+        key = _normalize_name(key)
+        self._ensure_have_load_only()
+
+        assert self.load_only
+        fname, parser = self._get_parser_to_modify()
+
+        if parser is not None:
+            section, name = _disassemble_key(key)
+
+            # Modify the parser and the configuration
+            if not parser.has_section(section):
+                parser.add_section(section)
+            parser.set(section, name, value)
+
+        self._config[self.load_only][key] = value
+        self._mark_as_modified(fname, parser)
+
+    def unset_value(self, key: str) -> None:
+        """Unset a value in the configuration."""
+        orig_key = key
+        key = _normalize_name(key)
+        self._ensure_have_load_only()
+
+        assert self.load_only
+        if key not in self._config[self.load_only]:
+            raise ConfigurationError(f"No such key - {orig_key}")
+
+        fname, parser = self._get_parser_to_modify()
+
+        if parser is not None:
+            section, name = _disassemble_key(key)
+            if not (
+                parser.has_section(section) and parser.remove_option(section, name)
+            ):
+                # The option was not removed.
+                raise ConfigurationError(
+                    "Fatal Internal error [id=1]. Please report as a bug."
+                )
+
+            # The section may be empty after the option was removed.
+            if not parser.items(section):
+                parser.remove_section(section)
+            self._mark_as_modified(fname, parser)
+
+        del self._config[self.load_only][key]
+
+    def save(self) -> None:
+        """Save the current in-memory state."""
+        self._ensure_have_load_only()
+
+        for fname, parser in self._modified_parsers:
+            logger.info("Writing to %s", fname)
+
+            # Ensure directory exists.
+            ensure_dir(os.path.dirname(fname))
+
+            # Ensure directory's permission(need to be writeable)
+            try:
+                with open(fname, "w") as f:
+                    parser.write(f)
+            except OSError as error:
+                raise ConfigurationError(
+                    f"An error occurred while writing to the configuration file "
+                    f"{fname}: {error}"
+                )
+
+    #
+    # Private routines
+    #
+
+    def _ensure_have_load_only(self) -> None:
+        if self.load_only is None:
+            raise ConfigurationError("Needed a specific file to be modifying.")
+        logger.debug("Will be working with %s variant only", self.load_only)
+
+    @property
+    def _dictionary(self) -> Dict[str, Any]:
+        """A dictionary representing the loaded configuration."""
+        # NOTE: Dictionaries are not populated if not loaded. So, conditionals
+        #       are not needed here.
+        retval = {}
+
+        for variant in OVERRIDE_ORDER:
+            retval.update(self._config[variant])
+
+        return retval
+
+    def _load_config_files(self) -> None:
+        """Loads configuration from configuration files"""
+        config_files = dict(self.iter_config_files())
+        if config_files[kinds.ENV][0:1] == [os.devnull]:
+            logger.debug(
+                "Skipping loading configuration files due to "
+                "environment's PIP_CONFIG_FILE being os.devnull"
+            )
+            return
+
+        for variant, files in config_files.items():
+            for fname in files:
+                # If there's specific variant set in `load_only`, load only
+                # that variant, not the others.
+                if self.load_only is not None and variant != self.load_only:
+                    logger.debug("Skipping file '%s' (variant: %s)", fname, variant)
+                    continue
+
+                parser = self._load_file(variant, fname)
+
+                # Keeping track of the parsers used
+                self._parsers[variant].append((fname, parser))
+
+    def _load_file(self, variant: Kind, fname: str) -> RawConfigParser:
+        logger.verbose("For variant '%s', will try loading '%s'", variant, fname)
+        parser = self._construct_parser(fname)
+
+        for section in parser.sections():
+            items = parser.items(section)
+            self._config[variant].update(self._normalized_keys(section, items))
+
+        return parser
+
+    def _construct_parser(self, fname: str) -> RawConfigParser:
+        parser = configparser.RawConfigParser()
+        # If there is no such file, don't bother reading it but create the
+        # parser anyway, to hold the data.
+        # Doing this is useful when modifying and saving files, where we don't
+        # need to construct a parser.
+        if os.path.exists(fname):
+            locale_encoding = locale.getpreferredencoding(False)
+            try:
+                parser.read(fname, encoding=locale_encoding)
+            except UnicodeDecodeError:
+                # See https://github.com/pypa/pip/issues/4963
+                raise ConfigurationFileCouldNotBeLoaded(
+                    reason=f"contains invalid {locale_encoding} characters",
+                    fname=fname,
+                )
+            except configparser.Error as error:
+                # See https://github.com/pypa/pip/issues/4893
+                raise ConfigurationFileCouldNotBeLoaded(error=error)
+        return parser
+
+    def _load_environment_vars(self) -> None:
+        """Loads configuration from environment variables"""
+        self._config[kinds.ENV_VAR].update(
+            self._normalized_keys(":env:", self.get_environ_vars())
+        )
+
+    def _normalized_keys(
+        self, section: str, items: Iterable[Tuple[str, Any]]
+    ) -> Dict[str, Any]:
+        """Normalizes items to construct a dictionary with normalized keys.
+
+        This routine is where the names become keys and are made the same
+        regardless of source - configuration files or environment.
+        """
+        normalized = {}
+        for name, val in items:
+            key = section + "." + _normalize_name(name)
+            normalized[key] = val
+        return normalized
+
+    def get_environ_vars(self) -> Iterable[Tuple[str, str]]:
+        """Returns a generator with all environmental vars with prefix PIP_"""
+        for key, val in os.environ.items():
+            if key.startswith("PIP_"):
+                name = key[4:].lower()
+                if name not in ENV_NAMES_IGNORED:
+                    yield name, val
+
+    # XXX: This is patched in the tests.
+    def iter_config_files(self) -> Iterable[Tuple[Kind, List[str]]]:
+        """Yields variant and configuration files associated with it.
+
+        This should be treated like items of a dictionary. The order
+        here doesn't affect what gets overridden. That is controlled
+        by OVERRIDE_ORDER. However this does control the order they are
+        displayed to the user. It's probably most ergononmic to display
+        things in the same order as OVERRIDE_ORDER
+        """
+        # SMELL: Move the conditions out of this function
+
+        env_config_file = os.environ.get("PIP_CONFIG_FILE", None)
+        config_files = get_configuration_files()
+
+        yield kinds.GLOBAL, config_files[kinds.GLOBAL]
+
+        # per-user config is not loaded when env_config_file exists
+        should_load_user_config = not self.isolated and not (
+            env_config_file and os.path.exists(env_config_file)
+        )
+        if should_load_user_config:
+            # The legacy config file is overridden by the new config file
+            yield kinds.USER, config_files[kinds.USER]
+
+        # virtualenv config
+        yield kinds.SITE, config_files[kinds.SITE]
+
+        if env_config_file is not None:
+            yield kinds.ENV, [env_config_file]
+        else:
+            yield kinds.ENV, []
+
+    def get_values_in_config(self, variant: Kind) -> Dict[str, Any]:
+        """Get values present in a config file"""
+        return self._config[variant]
+
+    def _get_parser_to_modify(self) -> Tuple[str, RawConfigParser]:
+        # Determine which parser to modify
+        assert self.load_only
+        parsers = self._parsers[self.load_only]
+        if not parsers:
+            # This should not happen if everything works correctly.
+            raise ConfigurationError(
+                "Fatal Internal error [id=2]. Please report as a bug."
+            )
+
+        # Use the highest priority parser.
+        return parsers[-1]
+
+    # XXX: This is patched in the tests.
+    def _mark_as_modified(self, fname: str, parser: RawConfigParser) -> None:
+        file_parser_tuple = (fname, parser)
+        if file_parser_tuple not in self._modified_parsers:
+            self._modified_parsers.append(file_parser_tuple)
+
+    def __repr__(self) -> str:
+        return f"{self.__class__.__name__}({self._dictionary!r})"

galaxy/lib/python3.12/site-packages/pip/_internal/distributions/__init__.py

@@ -0,0 +1,21 @@
+from pip._internal.distributions.base import AbstractDistribution
+from pip._internal.distributions.sdist import SourceDistribution
+from pip._internal.distributions.wheel import WheelDistribution
+from pip._internal.req.req_install import InstallRequirement
+
+
+def make_distribution_for_install_requirement(
+    install_req: InstallRequirement,
+) -> AbstractDistribution:
+    """Returns a Distribution for the given InstallRequirement"""
+    # Editable requirements will always be source distributions. They use the
+    # legacy logic until we create a modern standard for them.
+    if install_req.editable:
+        return SourceDistribution(install_req)
+
+    # If it's a wheel, it's a WheelDistribution
+    if install_req.is_wheel:
+        return WheelDistribution(install_req)
+
+    # Otherwise, a SourceDistribution
+    return SourceDistribution(install_req)

galaxy/lib/python3.12/site-packages/pip/_internal/distributions/base.py

@@ -0,0 +1,51 @@
+import abc
+from typing import Optional
+
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.metadata.base import BaseDistribution
+from pip._internal.req import InstallRequirement
+
+
+class AbstractDistribution(metaclass=abc.ABCMeta):
+    """A base class for handling installable artifacts.
+
+    The requirements for anything installable are as follows:
+
+     - we must be able to determine the requirement name
+       (or we can't correctly handle the non-upgrade case).
+
+     - for packages with setup requirements, we must also be able
+       to determine their requirements without installing additional
+       packages (for the same reason as run-time dependencies)
+
+     - we must be able to create a Distribution object exposing the
+       above metadata.
+
+     - if we need to do work in the build tracker, we must be able to generate a unique
+       string to identify the requirement in the build tracker.
+    """
+
+    def __init__(self, req: InstallRequirement) -> None:
+        super().__init__()
+        self.req = req
+
+    @abc.abstractproperty
+    def build_tracker_id(self) -> Optional[str]:
+        """A string that uniquely identifies this requirement to the build tracker.
+
+        If None, then this dist has no work to do in the build tracker, and
+        ``.prepare_distribution_metadata()`` will not be called."""
+        raise NotImplementedError()
+
+    @abc.abstractmethod
+    def get_metadata_distribution(self) -> BaseDistribution:
+        raise NotImplementedError()
+
+    @abc.abstractmethod
+    def prepare_distribution_metadata(
+        self,
+        finder: PackageFinder,
+        build_isolation: bool,
+        check_build_deps: bool,
+    ) -> None:
+        raise NotImplementedError()

galaxy/lib/python3.12/site-packages/pip/_internal/distributions/installed.py

@@ -0,0 +1,29 @@
+from typing import Optional
+
+from pip._internal.distributions.base import AbstractDistribution
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.metadata import BaseDistribution
+
+
+class InstalledDistribution(AbstractDistribution):
+    """Represents an installed package.
+
+    This does not need any preparation as the required information has already
+    been computed.
+    """
+
+    @property
+    def build_tracker_id(self) -> Optional[str]:
+        return None
+
+    def get_metadata_distribution(self) -> BaseDistribution:
+        assert self.req.satisfied_by is not None, "not actually installed"
+        return self.req.satisfied_by
+
+    def prepare_distribution_metadata(
+        self,
+        finder: PackageFinder,
+        build_isolation: bool,
+        check_build_deps: bool,
+    ) -> None:
+        pass

galaxy/lib/python3.12/site-packages/pip/_internal/distributions/sdist.py

@@ -0,0 +1,156 @@
+import logging
+from typing import Iterable, Optional, Set, Tuple
+
+from pip._internal.build_env import BuildEnvironment
+from pip._internal.distributions.base import AbstractDistribution
+from pip._internal.exceptions import InstallationError
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.metadata import BaseDistribution
+from pip._internal.utils.subprocess import runner_with_spinner_message
+
+logger = logging.getLogger(__name__)
+
+
+class SourceDistribution(AbstractDistribution):
+    """Represents a source distribution.
+
+    The preparation step for these needs metadata for the packages to be
+    generated, either using PEP 517 or using the legacy `setup.py egg_info`.
+    """
+
+    @property
+    def build_tracker_id(self) -> Optional[str]:
+        """Identify this requirement uniquely by its link."""
+        assert self.req.link
+        return self.req.link.url_without_fragment
+
+    def get_metadata_distribution(self) -> BaseDistribution:
+        return self.req.get_dist()
+
+    def prepare_distribution_metadata(
+        self,
+        finder: PackageFinder,
+        build_isolation: bool,
+        check_build_deps: bool,
+    ) -> None:
+        # Load pyproject.toml, to determine whether PEP 517 is to be used
+        self.req.load_pyproject_toml()
+
+        # Set up the build isolation, if this requirement should be isolated
+        should_isolate = self.req.use_pep517 and build_isolation
+        if should_isolate:
+            # Setup an isolated environment and install the build backend static
+            # requirements in it.
+            self._prepare_build_backend(finder)
+            # Check that if the requirement is editable, it either supports PEP 660 or
+            # has a setup.py or a setup.cfg. This cannot be done earlier because we need
+            # to setup the build backend to verify it supports build_editable, nor can
+            # it be done later, because we want to avoid installing build requirements
+            # needlessly. Doing it here also works around setuptools generating
+            # UNKNOWN.egg-info when running get_requires_for_build_wheel on a directory
+            # without setup.py nor setup.cfg.
+            self.req.isolated_editable_sanity_check()
+            # Install the dynamic build requirements.
+            self._install_build_reqs(finder)
+        # Check if the current environment provides build dependencies
+        should_check_deps = self.req.use_pep517 and check_build_deps
+        if should_check_deps:
+            pyproject_requires = self.req.pyproject_requires
+            assert pyproject_requires is not None
+            conflicting, missing = self.req.build_env.check_requirements(
+                pyproject_requires
+            )
+            if conflicting:
+                self._raise_conflicts("the backend dependencies", conflicting)
+            if missing:
+                self._raise_missing_reqs(missing)
+        self.req.prepare_metadata()
+
+    def _prepare_build_backend(self, finder: PackageFinder) -> None:
+        # Isolate in a BuildEnvironment and install the build-time
+        # requirements.
+        pyproject_requires = self.req.pyproject_requires
+        assert pyproject_requires is not None
+
+        self.req.build_env = BuildEnvironment()
+        self.req.build_env.install_requirements(
+            finder, pyproject_requires, "overlay", kind="build dependencies"
+        )
+        conflicting, missing = self.req.build_env.check_requirements(
+            self.req.requirements_to_check
+        )
+        if conflicting:
+            self._raise_conflicts("PEP 517/518 supported requirements", conflicting)
+        if missing:
+            logger.warning(
+                "Missing build requirements in pyproject.toml for %s.",
+                self.req,
+            )
+            logger.warning(
+                "The project does not specify a build backend, and "
+                "pip cannot fall back to setuptools without %s.",
+                " and ".join(map(repr, sorted(missing))),
+            )
+
+    def _get_build_requires_wheel(self) -> Iterable[str]:
+        with self.req.build_env:
+            runner = runner_with_spinner_message("Getting requirements to build wheel")
+            backend = self.req.pep517_backend
+            assert backend is not None
+            with backend.subprocess_runner(runner):
+                return backend.get_requires_for_build_wheel()
+
+    def _get_build_requires_editable(self) -> Iterable[str]:
+        with self.req.build_env:
+            runner = runner_with_spinner_message(
+                "Getting requirements to build editable"
+            )
+            backend = self.req.pep517_backend
+            assert backend is not None
+            with backend.subprocess_runner(runner):
+                return backend.get_requires_for_build_editable()
+
+    def _install_build_reqs(self, finder: PackageFinder) -> None:
+        # Install any extra build dependencies that the backend requests.
+        # This must be done in a second pass, as the pyproject.toml
+        # dependencies must be installed before we can call the backend.
+        if (
+            self.req.editable
+            and self.req.permit_editable_wheels
+            and self.req.supports_pyproject_editable()
+        ):
+            build_reqs = self._get_build_requires_editable()
+        else:
+            build_reqs = self._get_build_requires_wheel()
+        conflicting, missing = self.req.build_env.check_requirements(build_reqs)
+        if conflicting:
+            self._raise_conflicts("the backend dependencies", conflicting)
+        self.req.build_env.install_requirements(
+            finder, missing, "normal", kind="backend dependencies"
+        )
+
+    def _raise_conflicts(
+        self, conflicting_with: str, conflicting_reqs: Set[Tuple[str, str]]
+    ) -> None:
+        format_string = (
+            "Some build dependencies for {requirement} "
+            "conflict with {conflicting_with}: {description}."
+        )
+        error_message = format_string.format(
+            requirement=self.req,
+            conflicting_with=conflicting_with,
+            description=", ".join(
+                f"{installed} is incompatible with {wanted}"
+                for installed, wanted in sorted(conflicting_reqs)
+            ),
+        )
+        raise InstallationError(error_message)
+
+    def _raise_missing_reqs(self, missing: Set[str]) -> None:
+        format_string = (
+            "Some build dependencies for {requirement} are missing: {missing}."
+        )
+        error_message = format_string.format(
+            requirement=self.req, missing=", ".join(map(repr, sorted(missing)))
+        )
+        raise InstallationError(error_message)

galaxy/lib/python3.12/site-packages/pip/_internal/distributions/wheel.py

@@ -0,0 +1,40 @@
+from typing import Optional
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.distributions.base import AbstractDistribution
+from pip._internal.index.package_finder import PackageFinder
+from pip._internal.metadata import (
+    BaseDistribution,
+    FilesystemWheel,
+    get_wheel_distribution,
+)
+
+
+class WheelDistribution(AbstractDistribution):
+    """Represents a wheel distribution.
+
+    This does not need any preparation as wheels can be directly unpacked.
+    """
+
+    @property
+    def build_tracker_id(self) -> Optional[str]:
+        return None
+
+    def get_metadata_distribution(self) -> BaseDistribution:
+        """Loads the metadata from the wheel file into memory and returns a
+        Distribution that uses it, not relying on the wheel file or
+        requirement.
+        """
+        assert self.req.local_file_path, "Set as part of preparation during download"
+        assert self.req.name, "Wheels are never unnamed"
+        wheel = FilesystemWheel(self.req.local_file_path)
+        return get_wheel_distribution(wheel, canonicalize_name(self.req.name))
+
+    def prepare_distribution_metadata(
+        self,
+        finder: PackageFinder,
+        build_isolation: bool,
+        check_build_deps: bool,
+    ) -> None:
+        pass

galaxy/lib/python3.12/site-packages/pip/_internal/exceptions.py

@@ -0,0 +1,728 @@
+"""Exceptions used throughout package.
+
+This module MUST NOT try to import from anything within `pip._internal` to
+operate. This is expected to be importable from any/all files within the
+subpackage and, thus, should not depend on them.
+"""
+
+import configparser
+import contextlib
+import locale
+import logging
+import pathlib
+import re
+import sys
+from itertools import chain, groupby, repeat
+from typing import TYPE_CHECKING, Dict, Iterator, List, Optional, Union
+
+from pip._vendor.requests.models import Request, Response
+from pip._vendor.rich.console import Console, ConsoleOptions, RenderResult
+from pip._vendor.rich.markup import escape
+from pip._vendor.rich.text import Text
+
+if TYPE_CHECKING:
+    from hashlib import _Hash
+    from typing import Literal
+
+    from pip._internal.metadata import BaseDistribution
+    from pip._internal.req.req_install import InstallRequirement
+
+logger = logging.getLogger(__name__)
+
+
+#
+# Scaffolding
+#
+def _is_kebab_case(s: str) -> bool:
+    return re.match(r"^[a-z]+(-[a-z]+)*$", s) is not None
+
+
+def _prefix_with_indent(
+    s: Union[Text, str],
+    console: Console,
+    *,
+    prefix: str,
+    indent: str,
+) -> Text:
+    if isinstance(s, Text):
+        text = s
+    else:
+        text = console.render_str(s)
+
+    return console.render_str(prefix, overflow="ignore") + console.render_str(
+        f"\n{indent}", overflow="ignore"
+    ).join(text.split(allow_blank=True))
+
+
+class PipError(Exception):
+    """The base pip error."""
+
+
+class DiagnosticPipError(PipError):
+    """An error, that presents diagnostic information to the user.
+
+    This contains a bunch of logic, to enable pretty presentation of our error
+    messages. Each error gets a unique reference. Each error can also include
+    additional context, a hint and/or a note -- which are presented with the
+    main error message in a consistent style.
+
+    This is adapted from the error output styling in `sphinx-theme-builder`.
+    """
+
+    reference: str
+
+    def __init__(
+        self,
+        *,
+        kind: 'Literal["error", "warning"]' = "error",
+        reference: Optional[str] = None,
+        message: Union[str, Text],
+        context: Optional[Union[str, Text]],
+        hint_stmt: Optional[Union[str, Text]],
+        note_stmt: Optional[Union[str, Text]] = None,
+        link: Optional[str] = None,
+    ) -> None:
+        # Ensure a proper reference is provided.
+        if reference is None:
+            assert hasattr(self, "reference"), "error reference not provided!"
+            reference = self.reference
+        assert _is_kebab_case(reference), "error reference must be kebab-case!"
+
+        self.kind = kind
+        self.reference = reference
+
+        self.message = message
+        self.context = context
+
+        self.note_stmt = note_stmt
+        self.hint_stmt = hint_stmt
+
+        self.link = link
+
+        super().__init__(f"<{self.__class__.__name__}: {self.reference}>")
+
+    def __repr__(self) -> str:
+        return (
+            f"<{self.__class__.__name__}("
+            f"reference={self.reference!r}, "
+            f"message={self.message!r}, "
+            f"context={self.context!r}, "
+            f"note_stmt={self.note_stmt!r}, "
+            f"hint_stmt={self.hint_stmt!r}"
+            ")>"
+        )
+
+    def __rich_console__(
+        self,
+        console: Console,
+        options: ConsoleOptions,
+    ) -> RenderResult:
+        colour = "red" if self.kind == "error" else "yellow"
+
+        yield f"[{colour} bold]{self.kind}[/]: [bold]{self.reference}[/]"
+        yield ""
+
+        if not options.ascii_only:
+            # Present the main message, with relevant context indented.
+            if self.context is not None:
+                yield _prefix_with_indent(
+                    self.message,
+                    console,
+                    prefix=f"[{colour}]×[/] ",
+                    indent=f"[{colour}]│[/] ",
+                )
+                yield _prefix_with_indent(
+                    self.context,
+                    console,
+                    prefix=f"[{colour}]╰─>[/] ",
+                    indent=f"[{colour}]   [/] ",
+                )
+            else:
+                yield _prefix_with_indent(
+                    self.message,
+                    console,
+                    prefix="[red]×[/] ",
+                    indent="  ",
+                )
+        else:
+            yield self.message
+            if self.context is not None:
+                yield ""
+                yield self.context
+
+        if self.note_stmt is not None or self.hint_stmt is not None:
+            yield ""
+
+        if self.note_stmt is not None:
+            yield _prefix_with_indent(
+                self.note_stmt,
+                console,
+                prefix="[magenta bold]note[/]: ",
+                indent="      ",
+            )
+        if self.hint_stmt is not None:
+            yield _prefix_with_indent(
+                self.hint_stmt,
+                console,
+                prefix="[cyan bold]hint[/]: ",
+                indent="      ",
+            )
+
+        if self.link is not None:
+            yield ""
+            yield f"Link: {self.link}"
+
+
+#
+# Actual Errors
+#
+class ConfigurationError(PipError):
+    """General exception in configuration"""
+
+
+class InstallationError(PipError):
+    """General exception during installation"""
+
+
+class UninstallationError(PipError):
+    """General exception during uninstallation"""
+
+
+class MissingPyProjectBuildRequires(DiagnosticPipError):
+    """Raised when pyproject.toml has `build-system`, but no `build-system.requires`."""
+
+    reference = "missing-pyproject-build-system-requires"
+
+    def __init__(self, *, package: str) -> None:
+        super().__init__(
+            message=f"Can not process {escape(package)}",
+            context=Text(
+                "This package has an invalid pyproject.toml file.\n"
+                "The [build-system] table is missing the mandatory `requires` key."
+            ),
+            note_stmt="This is an issue with the package mentioned above, not pip.",
+            hint_stmt=Text("See PEP 518 for the detailed specification."),
+        )
+
+
+class InvalidPyProjectBuildRequires(DiagnosticPipError):
+    """Raised when pyproject.toml an invalid `build-system.requires`."""
+
+    reference = "invalid-pyproject-build-system-requires"
+
+    def __init__(self, *, package: str, reason: str) -> None:
+        super().__init__(
+            message=f"Can not process {escape(package)}",
+            context=Text(
+                "This package has an invalid `build-system.requires` key in "
+                f"pyproject.toml.\n{reason}"
+            ),
+            note_stmt="This is an issue with the package mentioned above, not pip.",
+            hint_stmt=Text("See PEP 518 for the detailed specification."),
+        )
+
+
+class NoneMetadataError(PipError):
+    """Raised when accessing a Distribution's "METADATA" or "PKG-INFO".
+
+    This signifies an inconsistency, when the Distribution claims to have
+    the metadata file (if not, raise ``FileNotFoundError`` instead), but is
+    not actually able to produce its content. This may be due to permission
+    errors.
+    """
+
+    def __init__(
+        self,
+        dist: "BaseDistribution",
+        metadata_name: str,
+    ) -> None:
+        """
+        :param dist: A Distribution object.
+        :param metadata_name: The name of the metadata being accessed
+            (can be "METADATA" or "PKG-INFO").
+        """
+        self.dist = dist
+        self.metadata_name = metadata_name
+
+    def __str__(self) -> str:
+        # Use `dist` in the error message because its stringification
+        # includes more information, like the version and location.
+        return f"None {self.metadata_name} metadata found for distribution: {self.dist}"
+
+
+class UserInstallationInvalid(InstallationError):
+    """A --user install is requested on an environment without user site."""
+
+    def __str__(self) -> str:
+        return "User base directory is not specified"
+
+
+class InvalidSchemeCombination(InstallationError):
+    def __str__(self) -> str:
+        before = ", ".join(str(a) for a in self.args[:-1])
+        return f"Cannot set {before} and {self.args[-1]} together"
+
+
+class DistributionNotFound(InstallationError):
+    """Raised when a distribution cannot be found to satisfy a requirement"""
+
+
+class RequirementsFileParseError(InstallationError):
+    """Raised when a general error occurs parsing a requirements file line."""
+
+
+class BestVersionAlreadyInstalled(PipError):
+    """Raised when the most up-to-date version of a package is already
+    installed."""
+
+
+class BadCommand(PipError):
+    """Raised when virtualenv or a command is not found"""
+
+
+class CommandError(PipError):
+    """Raised when there is an error in command-line arguments"""
+
+
+class PreviousBuildDirError(PipError):
+    """Raised when there's a previous conflicting build directory"""
+
+
+class NetworkConnectionError(PipError):
+    """HTTP connection error"""
+
+    def __init__(
+        self,
+        error_msg: str,
+        response: Optional[Response] = None,
+        request: Optional[Request] = None,
+    ) -> None:
+        """
+        Initialize NetworkConnectionError with  `request` and `response`
+        objects.
+        """
+        self.response = response
+        self.request = request
+        self.error_msg = error_msg
+        if (
+            self.response is not None
+            and not self.request
+            and hasattr(response, "request")
+        ):
+            self.request = self.response.request
+        super().__init__(error_msg, response, request)
+
+    def __str__(self) -> str:
+        return str(self.error_msg)
+
+
+class InvalidWheelFilename(InstallationError):
+    """Invalid wheel filename."""
+
+
+class UnsupportedWheel(InstallationError):
+    """Unsupported wheel."""
+
+
+class InvalidWheel(InstallationError):
+    """Invalid (e.g. corrupt) wheel."""
+
+    def __init__(self, location: str, name: str):
+        self.location = location
+        self.name = name
+
+    def __str__(self) -> str:
+        return f"Wheel '{self.name}' located at {self.location} is invalid."
+
+
+class MetadataInconsistent(InstallationError):
+    """Built metadata contains inconsistent information.
+
+    This is raised when the metadata contains values (e.g. name and version)
+    that do not match the information previously obtained from sdist filename,
+    user-supplied ``#egg=`` value, or an install requirement name.
+    """
+
+    def __init__(
+        self, ireq: "InstallRequirement", field: str, f_val: str, m_val: str
+    ) -> None:
+        self.ireq = ireq
+        self.field = field
+        self.f_val = f_val
+        self.m_val = m_val
+
+    def __str__(self) -> str:
+        return (
+            f"Requested {self.ireq} has inconsistent {self.field}: "
+            f"expected {self.f_val!r}, but metadata has {self.m_val!r}"
+        )
+
+
+class InstallationSubprocessError(DiagnosticPipError, InstallationError):
+    """A subprocess call failed."""
+
+    reference = "subprocess-exited-with-error"
+
+    def __init__(
+        self,
+        *,
+        command_description: str,
+        exit_code: int,
+        output_lines: Optional[List[str]],
+    ) -> None:
+        if output_lines is None:
+            output_prompt = Text("See above for output.")
+        else:
+            output_prompt = (
+                Text.from_markup(f"[red][{len(output_lines)} lines of output][/]\n")
+                + Text("".join(output_lines))
+                + Text.from_markup(R"[red]\[end of output][/]")
+            )
+
+        super().__init__(
+            message=(
+                f"[green]{escape(command_description)}[/] did not run successfully.\n"
+                f"exit code: {exit_code}"
+            ),
+            context=output_prompt,
+            hint_stmt=None,
+            note_stmt=(
+                "This error originates from a subprocess, and is likely not a "
+                "problem with pip."
+            ),
+        )
+
+        self.command_description = command_description
+        self.exit_code = exit_code
+
+    def __str__(self) -> str:
+        return f"{self.command_description} exited with {self.exit_code}"
+
+
+class MetadataGenerationFailed(InstallationSubprocessError, InstallationError):
+    reference = "metadata-generation-failed"
+
+    def __init__(
+        self,
+        *,
+        package_details: str,
+    ) -> None:
+        super(InstallationSubprocessError, self).__init__(
+            message="Encountered error while generating package metadata.",
+            context=escape(package_details),
+            hint_stmt="See above for details.",
+            note_stmt="This is an issue with the package mentioned above, not pip.",
+        )
+
+    def __str__(self) -> str:
+        return "metadata generation failed"
+
+
+class HashErrors(InstallationError):
+    """Multiple HashError instances rolled into one for reporting"""
+
+    def __init__(self) -> None:
+        self.errors: List["HashError"] = []
+
+    def append(self, error: "HashError") -> None:
+        self.errors.append(error)
+
+    def __str__(self) -> str:
+        lines = []
+        self.errors.sort(key=lambda e: e.order)
+        for cls, errors_of_cls in groupby(self.errors, lambda e: e.__class__):
+            lines.append(cls.head)
+            lines.extend(e.body() for e in errors_of_cls)
+        if lines:
+            return "\n".join(lines)
+        return ""
+
+    def __bool__(self) -> bool:
+        return bool(self.errors)
+
+
+class HashError(InstallationError):
+    """
+    A failure to verify a package against known-good hashes
+
+    :cvar order: An int sorting hash exception classes by difficulty of
+        recovery (lower being harder), so the user doesn't bother fretting
+        about unpinned packages when he has deeper issues, like VCS
+        dependencies, to deal with. Also keeps error reports in a
+        deterministic order.
+    :cvar head: A section heading for display above potentially many
+        exceptions of this kind
+    :ivar req: The InstallRequirement that triggered this error. This is
+        pasted on after the exception is instantiated, because it's not
+        typically available earlier.
+
+    """
+
+    req: Optional["InstallRequirement"] = None
+    head = ""
+    order: int = -1
+
+    def body(self) -> str:
+        """Return a summary of me for display under the heading.
+
+        This default implementation simply prints a description of the
+        triggering requirement.
+
+        :param req: The InstallRequirement that provoked this error, with
+            its link already populated by the resolver's _populate_link().
+
+        """
+        return f"    {self._requirement_name()}"
+
+    def __str__(self) -> str:
+        return f"{self.head}\n{self.body()}"
+
+    def _requirement_name(self) -> str:
+        """Return a description of the requirement that triggered me.
+
+        This default implementation returns long description of the req, with
+        line numbers
+
+        """
+        return str(self.req) if self.req else "unknown package"
+
+
+class VcsHashUnsupported(HashError):
+    """A hash was provided for a version-control-system-based requirement, but
+    we don't have a method for hashing those."""
+
+    order = 0
+    head = (
+        "Can't verify hashes for these requirements because we don't "
+        "have a way to hash version control repositories:"
+    )
+
+
+class DirectoryUrlHashUnsupported(HashError):
+    """A hash was provided for a version-control-system-based requirement, but
+    we don't have a method for hashing those."""
+
+    order = 1
+    head = (
+        "Can't verify hashes for these file:// requirements because they "
+        "point to directories:"
+    )
+
+
+class HashMissing(HashError):
+    """A hash was needed for a requirement but is absent."""
+
+    order = 2
+    head = (
+        "Hashes are required in --require-hashes mode, but they are "
+        "missing from some requirements. Here is a list of those "
+        "requirements along with the hashes their downloaded archives "
+        "actually had. Add lines like these to your requirements files to "
+        "prevent tampering. (If you did not enable --require-hashes "
+        "manually, note that it turns on automatically when any package "
+        "has a hash.)"
+    )
+
+    def __init__(self, gotten_hash: str) -> None:
+        """
+        :param gotten_hash: The hash of the (possibly malicious) archive we
+            just downloaded
+        """
+        self.gotten_hash = gotten_hash
+
+    def body(self) -> str:
+        # Dodge circular import.
+        from pip._internal.utils.hashes import FAVORITE_HASH
+
+        package = None
+        if self.req:
+            # In the case of URL-based requirements, display the original URL
+            # seen in the requirements file rather than the package name,
+            # so the output can be directly copied into the requirements file.
+            package = (
+                self.req.original_link
+                if self.req.is_direct
+                # In case someone feeds something downright stupid
+                # to InstallRequirement's constructor.
+                else getattr(self.req, "req", None)
+            )
+        return "    {} --hash={}:{}".format(
+            package or "unknown package", FAVORITE_HASH, self.gotten_hash
+        )
+
+
+class HashUnpinned(HashError):
+    """A requirement had a hash specified but was not pinned to a specific
+    version."""
+
+    order = 3
+    head = (
+        "In --require-hashes mode, all requirements must have their "
+        "versions pinned with ==. These do not:"
+    )
+
+
+class HashMismatch(HashError):
+    """
+    Distribution file hash values don't match.
+
+    :ivar package_name: The name of the package that triggered the hash
+        mismatch. Feel free to write to this after the exception is raise to
+        improve its error message.
+
+    """
+
+    order = 4
+    head = (
+        "THESE PACKAGES DO NOT MATCH THE HASHES FROM THE REQUIREMENTS "
+        "FILE. If you have updated the package versions, please update "
+        "the hashes. Otherwise, examine the package contents carefully; "
+        "someone may have tampered with them."
+    )
+
+    def __init__(self, allowed: Dict[str, List[str]], gots: Dict[str, "_Hash"]) -> None:
+        """
+        :param allowed: A dict of algorithm names pointing to lists of allowed
+            hex digests
+        :param gots: A dict of algorithm names pointing to hashes we
+            actually got from the files under suspicion
+        """
+        self.allowed = allowed
+        self.gots = gots
+
+    def body(self) -> str:
+        return f"    {self._requirement_name()}:\n{self._hash_comparison()}"
+
+    def _hash_comparison(self) -> str:
+        """
+        Return a comparison of actual and expected hash values.
+
+        Example::
+
+               Expected sha256 abcdeabcdeabcdeabcdeabcdeabcdeabcdeabcdeabcde
+                            or 123451234512345123451234512345123451234512345
+                    Got        bcdefbcdefbcdefbcdefbcdefbcdefbcdefbcdefbcdef
+
+        """
+
+        def hash_then_or(hash_name: str) -> "chain[str]":
+            # For now, all the decent hashes have 6-char names, so we can get
+            # away with hard-coding space literals.
+            return chain([hash_name], repeat("    or"))
+
+        lines: List[str] = []
+        for hash_name, expecteds in self.allowed.items():
+            prefix = hash_then_or(hash_name)
+            lines.extend((f"        Expected {next(prefix)} {e}") for e in expecteds)
+            lines.append(
+                f"             Got        {self.gots[hash_name].hexdigest()}\n"
+            )
+        return "\n".join(lines)
+
+
+class UnsupportedPythonVersion(InstallationError):
+    """Unsupported python version according to Requires-Python package
+    metadata."""
+
+
+class ConfigurationFileCouldNotBeLoaded(ConfigurationError):
+    """When there are errors while loading a configuration file"""
+
+    def __init__(
+        self,
+        reason: str = "could not be loaded",
+        fname: Optional[str] = None,
+        error: Optional[configparser.Error] = None,
+    ) -> None:
+        super().__init__(error)
+        self.reason = reason
+        self.fname = fname
+        self.error = error
+
+    def __str__(self) -> str:
+        if self.fname is not None:
+            message_part = f" in {self.fname}."
+        else:
+            assert self.error is not None
+            message_part = f".\n{self.error}\n"
+        return f"Configuration file {self.reason}{message_part}"
+
+
+_DEFAULT_EXTERNALLY_MANAGED_ERROR = f"""\
+The Python environment under {sys.prefix} is managed externally, and may not be
+manipulated by the user. Please use specific tooling from the distributor of
+the Python installation to interact with this environment instead.
+"""
+
+
+class ExternallyManagedEnvironment(DiagnosticPipError):
+    """The current environment is externally managed.
+
+    This is raised when the current environment is externally managed, as
+    defined by `PEP 668`_. The ``EXTERNALLY-MANAGED`` configuration is checked
+    and displayed when the error is bubbled up to the user.
+
+    :param error: The error message read from ``EXTERNALLY-MANAGED``.
+    """
+
+    reference = "externally-managed-environment"
+
+    def __init__(self, error: Optional[str]) -> None:
+        if error is None:
+            context = Text(_DEFAULT_EXTERNALLY_MANAGED_ERROR)
+        else:
+            context = Text(error)
+        super().__init__(
+            message="This environment is externally managed",
+            context=context,
+            note_stmt=(
+                "If you believe this is a mistake, please contact your "
+                "Python installation or OS distribution provider. "
+                "You can override this, at the risk of breaking your Python "
+                "installation or OS, by passing --break-system-packages."
+            ),
+            hint_stmt=Text("See PEP 668 for the detailed specification."),
+        )
+
+    @staticmethod
+    def _iter_externally_managed_error_keys() -> Iterator[str]:
+        # LC_MESSAGES is in POSIX, but not the C standard. The most common
+        # platform that does not implement this category is Windows, where
+        # using other categories for console message localization is equally
+        # unreliable, so we fall back to the locale-less vendor message. This
+        # can always be re-evaluated when a vendor proposes a new alternative.
+        try:
+            category = locale.LC_MESSAGES
+        except AttributeError:
+            lang: Optional[str] = None
+        else:
+            lang, _ = locale.getlocale(category)
+        if lang is not None:
+            yield f"Error-{lang}"
+            for sep in ("-", "_"):
+                before, found, _ = lang.partition(sep)
+                if not found:
+                    continue
+                yield f"Error-{before}"
+        yield "Error"
+
+    @classmethod
+    def from_config(
+        cls,
+        config: Union[pathlib.Path, str],
+    ) -> "ExternallyManagedEnvironment":
+        parser = configparser.ConfigParser(interpolation=None)
+        try:
+            parser.read(config, encoding="utf-8")
+            section = parser["externally-managed"]
+            for key in cls._iter_externally_managed_error_keys():
+                with contextlib.suppress(KeyError):
+                    return cls(section[key])
+        except KeyError:
+            pass
+        except (OSError, UnicodeDecodeError, configparser.ParsingError):
+            from pip._internal.utils._log import VERBOSE
+
+            exc_info = logger.isEnabledFor(VERBOSE)
+            logger.warning("Failed to read %s", config, exc_info=exc_info)
+        return cls(None)

galaxy/lib/python3.12/site-packages/pip/_internal/index/__init__.py

@@ -0,0 +1,2 @@
+"""Index interaction code
+"""

galaxy/lib/python3.12/site-packages/pip/_internal/index/collector.py

@@ -0,0 +1,507 @@
+"""
+The main purpose of this module is to expose LinkCollector.collect_sources().
+"""
+
+import collections
+import email.message
+import functools
+import itertools
+import json
+import logging
+import os
+import urllib.parse
+import urllib.request
+from html.parser import HTMLParser
+from optparse import Values
+from typing import (
+    TYPE_CHECKING,
+    Callable,
+    Dict,
+    Iterable,
+    List,
+    MutableMapping,
+    NamedTuple,
+    Optional,
+    Sequence,
+    Tuple,
+    Union,
+)
+
+from pip._vendor import requests
+from pip._vendor.requests import Response
+from pip._vendor.requests.exceptions import RetryError, SSLError
+
+from pip._internal.exceptions import NetworkConnectionError
+from pip._internal.models.link import Link
+from pip._internal.models.search_scope import SearchScope
+from pip._internal.network.session import PipSession
+from pip._internal.network.utils import raise_for_status
+from pip._internal.utils.filetypes import is_archive_file
+from pip._internal.utils.misc import redact_auth_from_url
+from pip._internal.vcs import vcs
+
+from .sources import CandidatesFromPage, LinkSource, build_source
+
+if TYPE_CHECKING:
+    from typing import Protocol
+else:
+    Protocol = object
+
+logger = logging.getLogger(__name__)
+
+ResponseHeaders = MutableMapping[str, str]
+
+
+def _match_vcs_scheme(url: str) -> Optional[str]:
+    """Look for VCS schemes in the URL.
+
+    Returns the matched VCS scheme, or None if there's no match.
+    """
+    for scheme in vcs.schemes:
+        if url.lower().startswith(scheme) and url[len(scheme)] in "+:":
+            return scheme
+    return None
+
+
+class _NotAPIContent(Exception):
+    def __init__(self, content_type: str, request_desc: str) -> None:
+        super().__init__(content_type, request_desc)
+        self.content_type = content_type
+        self.request_desc = request_desc
+
+
+def _ensure_api_header(response: Response) -> None:
+    """
+    Check the Content-Type header to ensure the response contains a Simple
+    API Response.
+
+    Raises `_NotAPIContent` if the content type is not a valid content-type.
+    """
+    content_type = response.headers.get("Content-Type", "Unknown")
+
+    content_type_l = content_type.lower()
+    if content_type_l.startswith(
+        (
+            "text/html",
+            "application/vnd.pypi.simple.v1+html",
+            "application/vnd.pypi.simple.v1+json",
+        )
+    ):
+        return
+
+    raise _NotAPIContent(content_type, response.request.method)
+
+
+class _NotHTTP(Exception):
+    pass
+
+
+def _ensure_api_response(url: str, session: PipSession) -> None:
+    """
+    Send a HEAD request to the URL, and ensure the response contains a simple
+    API Response.
+
+    Raises `_NotHTTP` if the URL is not available for a HEAD request, or
+    `_NotAPIContent` if the content type is not a valid content type.
+    """
+    scheme, netloc, path, query, fragment = urllib.parse.urlsplit(url)
+    if scheme not in {"http", "https"}:
+        raise _NotHTTP()
+
+    resp = session.head(url, allow_redirects=True)
+    raise_for_status(resp)
+
+    _ensure_api_header(resp)
+
+
+def _get_simple_response(url: str, session: PipSession) -> Response:
+    """Access an Simple API response with GET, and return the response.
+
+    This consists of three parts:
+
+    1. If the URL looks suspiciously like an archive, send a HEAD first to
+       check the Content-Type is HTML or Simple API, to avoid downloading a
+       large file. Raise `_NotHTTP` if the content type cannot be determined, or
+       `_NotAPIContent` if it is not HTML or a Simple API.
+    2. Actually perform the request. Raise HTTP exceptions on network failures.
+    3. Check the Content-Type header to make sure we got a Simple API response,
+       and raise `_NotAPIContent` otherwise.
+    """
+    if is_archive_file(Link(url).filename):
+        _ensure_api_response(url, session=session)
+
+    logger.debug("Getting page %s", redact_auth_from_url(url))
+
+    resp = session.get(
+        url,
+        headers={
+            "Accept": ", ".join(
+                [
+                    "application/vnd.pypi.simple.v1+json",
+                    "application/vnd.pypi.simple.v1+html; q=0.1",
+                    "text/html; q=0.01",
+                ]
+            ),
+            # We don't want to blindly returned cached data for
+            # /simple/, because authors generally expecting that
+            # twine upload && pip install will function, but if
+            # they've done a pip install in the last ~10 minutes
+            # it won't. Thus by setting this to zero we will not
+            # blindly use any cached data, however the benefit of
+            # using max-age=0 instead of no-cache, is that we will
+            # still support conditional requests, so we will still
+            # minimize traffic sent in cases where the page hasn't
+            # changed at all, we will just always incur the round
+            # trip for the conditional GET now instead of only
+            # once per 10 minutes.
+            # For more information, please see pypa/pip#5670.
+            "Cache-Control": "max-age=0",
+        },
+    )
+    raise_for_status(resp)
+
+    # The check for archives above only works if the url ends with
+    # something that looks like an archive. However that is not a
+    # requirement of an url. Unless we issue a HEAD request on every
+    # url we cannot know ahead of time for sure if something is a
+    # Simple API response or not. However we can check after we've
+    # downloaded it.
+    _ensure_api_header(resp)
+
+    logger.debug(
+        "Fetched page %s as %s",
+        redact_auth_from_url(url),
+        resp.headers.get("Content-Type", "Unknown"),
+    )
+
+    return resp
+
+
+def _get_encoding_from_headers(headers: ResponseHeaders) -> Optional[str]:
+    """Determine if we have any encoding information in our headers."""
+    if headers and "Content-Type" in headers:
+        m = email.message.Message()
+        m["content-type"] = headers["Content-Type"]
+        charset = m.get_param("charset")
+        if charset:
+            return str(charset)
+    return None
+
+
+class CacheablePageContent:
+    def __init__(self, page: "IndexContent") -> None:
+        assert page.cache_link_parsing
+        self.page = page
+
+    def __eq__(self, other: object) -> bool:
+        return isinstance(other, type(self)) and self.page.url == other.page.url
+
+    def __hash__(self) -> int:
+        return hash(self.page.url)
+
+
+class ParseLinks(Protocol):
+    def __call__(self, page: "IndexContent") -> Iterable[Link]:
+        ...
+
+
+def with_cached_index_content(fn: ParseLinks) -> ParseLinks:
+    """
+    Given a function that parses an Iterable[Link] from an IndexContent, cache the
+    function's result (keyed by CacheablePageContent), unless the IndexContent
+    `page` has `page.cache_link_parsing == False`.
+    """
+
+    @functools.lru_cache(maxsize=None)
+    def wrapper(cacheable_page: CacheablePageContent) -> List[Link]:
+        return list(fn(cacheable_page.page))
+
+    @functools.wraps(fn)
+    def wrapper_wrapper(page: "IndexContent") -> List[Link]:
+        if page.cache_link_parsing:
+            return wrapper(CacheablePageContent(page))
+        return list(fn(page))
+
+    return wrapper_wrapper
+
+
+@with_cached_index_content
+def parse_links(page: "IndexContent") -> Iterable[Link]:
+    """
+    Parse a Simple API's Index Content, and yield its anchor elements as Link objects.
+    """
+
+    content_type_l = page.content_type.lower()
+    if content_type_l.startswith("application/vnd.pypi.simple.v1+json"):
+        data = json.loads(page.content)
+        for file in data.get("files", []):
+            link = Link.from_json(file, page.url)
+            if link is None:
+                continue
+            yield link
+        return
+
+    parser = HTMLLinkParser(page.url)
+    encoding = page.encoding or "utf-8"
+    parser.feed(page.content.decode(encoding))
+
+    url = page.url
+    base_url = parser.base_url or url
+    for anchor in parser.anchors:
+        link = Link.from_element(anchor, page_url=url, base_url=base_url)
+        if link is None:
+            continue
+        yield link
+
+
+class IndexContent:
+    """Represents one response (or page), along with its URL"""
+
+    def __init__(
+        self,
+        content: bytes,
+        content_type: str,
+        encoding: Optional[str],
+        url: str,
+        cache_link_parsing: bool = True,
+    ) -> None:
+        """
+        :param encoding: the encoding to decode the given content.
+        :param url: the URL from which the HTML was downloaded.
+        :param cache_link_parsing: whether links parsed from this page's url
+                                   should be cached. PyPI index urls should
+                                   have this set to False, for example.
+        """
+        self.content = content
+        self.content_type = content_type
+        self.encoding = encoding
+        self.url = url
+        self.cache_link_parsing = cache_link_parsing
+
+    def __str__(self) -> str:
+        return redact_auth_from_url(self.url)
+
+
+class HTMLLinkParser(HTMLParser):
+    """
+    HTMLParser that keeps the first base HREF and a list of all anchor
+    elements' attributes.
+    """
+
+    def __init__(self, url: str) -> None:
+        super().__init__(convert_charrefs=True)
+
+        self.url: str = url
+        self.base_url: Optional[str] = None
+        self.anchors: List[Dict[str, Optional[str]]] = []
+
+    def handle_starttag(self, tag: str, attrs: List[Tuple[str, Optional[str]]]) -> None:
+        if tag == "base" and self.base_url is None:
+            href = self.get_href(attrs)
+            if href is not None:
+                self.base_url = href
+        elif tag == "a":
+            self.anchors.append(dict(attrs))
+
+    def get_href(self, attrs: List[Tuple[str, Optional[str]]]) -> Optional[str]:
+        for name, value in attrs:
+            if name == "href":
+                return value
+        return None
+
+
+def _handle_get_simple_fail(
+    link: Link,
+    reason: Union[str, Exception],
+    meth: Optional[Callable[..., None]] = None,
+) -> None:
+    if meth is None:
+        meth = logger.debug
+    meth("Could not fetch URL %s: %s - skipping", link, reason)
+
+
+def _make_index_content(
+    response: Response, cache_link_parsing: bool = True
+) -> IndexContent:
+    encoding = _get_encoding_from_headers(response.headers)
+    return IndexContent(
+        response.content,
+        response.headers["Content-Type"],
+        encoding=encoding,
+        url=response.url,
+        cache_link_parsing=cache_link_parsing,
+    )
+
+
+def _get_index_content(link: Link, *, session: PipSession) -> Optional["IndexContent"]:
+    url = link.url.split("#", 1)[0]
+
+    # Check for VCS schemes that do not support lookup as web pages.
+    vcs_scheme = _match_vcs_scheme(url)
+    if vcs_scheme:
+        logger.warning(
+            "Cannot look at %s URL %s because it does not support lookup as web pages.",
+            vcs_scheme,
+            link,
+        )
+        return None
+
+    # Tack index.html onto file:// URLs that point to directories
+    scheme, _, path, _, _, _ = urllib.parse.urlparse(url)
+    if scheme == "file" and os.path.isdir(urllib.request.url2pathname(path)):
+        # add trailing slash if not present so urljoin doesn't trim
+        # final segment
+        if not url.endswith("/"):
+            url += "/"
+        # TODO: In the future, it would be nice if pip supported PEP 691
+        #       style responses in the file:// URLs, however there's no
+        #       standard file extension for application/vnd.pypi.simple.v1+json
+        #       so we'll need to come up with something on our own.
+        url = urllib.parse.urljoin(url, "index.html")
+        logger.debug(" file: URL is directory, getting %s", url)
+
+    try:
+        resp = _get_simple_response(url, session=session)
+    except _NotHTTP:
+        logger.warning(
+            "Skipping page %s because it looks like an archive, and cannot "
+            "be checked by a HTTP HEAD request.",
+            link,
+        )
+    except _NotAPIContent as exc:
+        logger.warning(
+            "Skipping page %s because the %s request got Content-Type: %s. "
+            "The only supported Content-Types are application/vnd.pypi.simple.v1+json, "
+            "application/vnd.pypi.simple.v1+html, and text/html",
+            link,
+            exc.request_desc,
+            exc.content_type,
+        )
+    except NetworkConnectionError as exc:
+        _handle_get_simple_fail(link, exc)
+    except RetryError as exc:
+        _handle_get_simple_fail(link, exc)
+    except SSLError as exc:
+        reason = "There was a problem confirming the ssl certificate: "
+        reason += str(exc)
+        _handle_get_simple_fail(link, reason, meth=logger.info)
+    except requests.ConnectionError as exc:
+        _handle_get_simple_fail(link, f"connection error: {exc}")
+    except requests.Timeout:
+        _handle_get_simple_fail(link, "timed out")
+    else:
+        return _make_index_content(resp, cache_link_parsing=link.cache_link_parsing)
+    return None
+
+
+class CollectedSources(NamedTuple):
+    find_links: Sequence[Optional[LinkSource]]
+    index_urls: Sequence[Optional[LinkSource]]
+
+
+class LinkCollector:
+
+    """
+    Responsible for collecting Link objects from all configured locations,
+    making network requests as needed.
+
+    The class's main method is its collect_sources() method.
+    """
+
+    def __init__(
+        self,
+        session: PipSession,
+        search_scope: SearchScope,
+    ) -> None:
+        self.search_scope = search_scope
+        self.session = session
+
+    @classmethod
+    def create(
+        cls,
+        session: PipSession,
+        options: Values,
+        suppress_no_index: bool = False,
+    ) -> "LinkCollector":
+        """
+        :param session: The Session to use to make requests.
+        :param suppress_no_index: Whether to ignore the --no-index option
+            when constructing the SearchScope object.
+        """
+        index_urls = [options.index_url] + options.extra_index_urls
+        if options.no_index and not suppress_no_index:
+            logger.debug(
+                "Ignoring indexes: %s",
+                ",".join(redact_auth_from_url(url) for url in index_urls),
+            )
+            index_urls = []
+
+        # Make sure find_links is a list before passing to create().
+        find_links = options.find_links or []
+
+        search_scope = SearchScope.create(
+            find_links=find_links,
+            index_urls=index_urls,
+            no_index=options.no_index,
+        )
+        link_collector = LinkCollector(
+            session=session,
+            search_scope=search_scope,
+        )
+        return link_collector
+
+    @property
+    def find_links(self) -> List[str]:
+        return self.search_scope.find_links
+
+    def fetch_response(self, location: Link) -> Optional[IndexContent]:
+        """
+        Fetch an HTML page containing package links.
+        """
+        return _get_index_content(location, session=self.session)
+
+    def collect_sources(
+        self,
+        project_name: str,
+        candidates_from_page: CandidatesFromPage,
+    ) -> CollectedSources:
+        # The OrderedDict calls deduplicate sources by URL.
+        index_url_sources = collections.OrderedDict(
+            build_source(
+                loc,
+                candidates_from_page=candidates_from_page,
+                page_validator=self.session.is_secure_origin,
+                expand_dir=False,
+                cache_link_parsing=False,
+                project_name=project_name,
+            )
+            for loc in self.search_scope.get_index_urls_locations(project_name)
+        ).values()
+        find_links_sources = collections.OrderedDict(
+            build_source(
+                loc,
+                candidates_from_page=candidates_from_page,
+                page_validator=self.session.is_secure_origin,
+                expand_dir=True,
+                cache_link_parsing=True,
+                project_name=project_name,
+            )
+            for loc in self.find_links
+        ).values()
+
+        if logger.isEnabledFor(logging.DEBUG):
+            lines = [
+                f"* {s.link}"
+                for s in itertools.chain(find_links_sources, index_url_sources)
+                if s is not None and s.link is not None
+            ]
+            lines = [
+                f"{len(lines)} location(s) to search "
+                f"for versions of {project_name}:"
+            ] + lines
+            logger.debug("\n".join(lines))
+
+        return CollectedSources(
+            find_links=list(find_links_sources),
+            index_urls=list(index_url_sources),
+        )

galaxy/lib/python3.12/site-packages/pip/_internal/index/sources.py

@@ -0,0 +1,285 @@
+import logging
+import mimetypes
+import os
+from collections import defaultdict
+from typing import Callable, Dict, Iterable, List, Optional, Tuple
+
+from pip._vendor.packaging.utils import (
+    InvalidSdistFilename,
+    InvalidVersion,
+    InvalidWheelFilename,
+    canonicalize_name,
+    parse_sdist_filename,
+    parse_wheel_filename,
+)
+
+from pip._internal.models.candidate import InstallationCandidate
+from pip._internal.models.link import Link
+from pip._internal.utils.urls import path_to_url, url_to_path
+from pip._internal.vcs import is_url
+
+logger = logging.getLogger(__name__)
+
+FoundCandidates = Iterable[InstallationCandidate]
+FoundLinks = Iterable[Link]
+CandidatesFromPage = Callable[[Link], Iterable[InstallationCandidate]]
+PageValidator = Callable[[Link], bool]
+
+
+class LinkSource:
+    @property
+    def link(self) -> Optional[Link]:
+        """Returns the underlying link, if there's one."""
+        raise NotImplementedError()
+
+    def page_candidates(self) -> FoundCandidates:
+        """Candidates found by parsing an archive listing HTML file."""
+        raise NotImplementedError()
+
+    def file_links(self) -> FoundLinks:
+        """Links found by specifying archives directly."""
+        raise NotImplementedError()
+
+
+def _is_html_file(file_url: str) -> bool:
+    return mimetypes.guess_type(file_url, strict=False)[0] == "text/html"
+
+
+class _FlatDirectoryToUrls:
+    """Scans directory and caches results"""
+
+    def __init__(self, path: str) -> None:
+        self._path = path
+        self._page_candidates: List[str] = []
+        self._project_name_to_urls: Dict[str, List[str]] = defaultdict(list)
+        self._scanned_directory = False
+
+    def _scan_directory(self) -> None:
+        """Scans directory once and populates both page_candidates
+        and project_name_to_urls at the same time
+        """
+        for entry in os.scandir(self._path):
+            url = path_to_url(entry.path)
+            if _is_html_file(url):
+                self._page_candidates.append(url)
+                continue
+
+            # File must have a valid wheel or sdist name,
+            # otherwise not worth considering as a package
+            try:
+                project_filename = parse_wheel_filename(entry.name)[0]
+            except (InvalidWheelFilename, InvalidVersion):
+                try:
+                    project_filename = parse_sdist_filename(entry.name)[0]
+                except (InvalidSdistFilename, InvalidVersion):
+                    continue
+
+            self._project_name_to_urls[project_filename].append(url)
+        self._scanned_directory = True
+
+    @property
+    def page_candidates(self) -> List[str]:
+        if not self._scanned_directory:
+            self._scan_directory()
+
+        return self._page_candidates
+
+    @property
+    def project_name_to_urls(self) -> Dict[str, List[str]]:
+        if not self._scanned_directory:
+            self._scan_directory()
+
+        return self._project_name_to_urls
+
+
+class _FlatDirectorySource(LinkSource):
+    """Link source specified by ``--find-links=<path-to-dir>``.
+
+    This looks the content of the directory, and returns:
+
+    * ``page_candidates``: Links listed on each HTML file in the directory.
+    * ``file_candidates``: Archives in the directory.
+    """
+
+    _paths_to_urls: Dict[str, _FlatDirectoryToUrls] = {}
+
+    def __init__(
+        self,
+        candidates_from_page: CandidatesFromPage,
+        path: str,
+        project_name: str,
+    ) -> None:
+        self._candidates_from_page = candidates_from_page
+        self._project_name = canonicalize_name(project_name)
+
+        # Get existing instance of _FlatDirectoryToUrls if it exists
+        if path in self._paths_to_urls:
+            self._path_to_urls = self._paths_to_urls[path]
+        else:
+            self._path_to_urls = _FlatDirectoryToUrls(path=path)
+            self._paths_to_urls[path] = self._path_to_urls
+
+    @property
+    def link(self) -> Optional[Link]:
+        return None
+
+    def page_candidates(self) -> FoundCandidates:
+        for url in self._path_to_urls.page_candidates:
+            yield from self._candidates_from_page(Link(url))
+
+    def file_links(self) -> FoundLinks:
+        for url in self._path_to_urls.project_name_to_urls[self._project_name]:
+            yield Link(url)
+
+
+class _LocalFileSource(LinkSource):
+    """``--find-links=<path-or-url>`` or ``--[extra-]index-url=<path-or-url>``.
+
+    If a URL is supplied, it must be a ``file:`` URL. If a path is supplied to
+    the option, it is converted to a URL first. This returns:
+
+    * ``page_candidates``: Links listed on an HTML file.
+    * ``file_candidates``: The non-HTML file.
+    """
+
+    def __init__(
+        self,
+        candidates_from_page: CandidatesFromPage,
+        link: Link,
+    ) -> None:
+        self._candidates_from_page = candidates_from_page
+        self._link = link
+
+    @property
+    def link(self) -> Optional[Link]:
+        return self._link
+
+    def page_candidates(self) -> FoundCandidates:
+        if not _is_html_file(self._link.url):
+            return
+        yield from self._candidates_from_page(self._link)
+
+    def file_links(self) -> FoundLinks:
+        if _is_html_file(self._link.url):
+            return
+        yield self._link
+
+
+class _RemoteFileSource(LinkSource):
+    """``--find-links=<url>`` or ``--[extra-]index-url=<url>``.
+
+    This returns:
+
+    * ``page_candidates``: Links listed on an HTML file.
+    * ``file_candidates``: The non-HTML file.
+    """
+
+    def __init__(
+        self,
+        candidates_from_page: CandidatesFromPage,
+        page_validator: PageValidator,
+        link: Link,
+    ) -> None:
+        self._candidates_from_page = candidates_from_page
+        self._page_validator = page_validator
+        self._link = link
+
+    @property
+    def link(self) -> Optional[Link]:
+        return self._link
+
+    def page_candidates(self) -> FoundCandidates:
+        if not self._page_validator(self._link):
+            return
+        yield from self._candidates_from_page(self._link)
+
+    def file_links(self) -> FoundLinks:
+        yield self._link
+
+
+class _IndexDirectorySource(LinkSource):
+    """``--[extra-]index-url=<path-to-directory>``.
+
+    This is treated like a remote URL; ``candidates_from_page`` contains logic
+    for this by appending ``index.html`` to the link.
+    """
+
+    def __init__(
+        self,
+        candidates_from_page: CandidatesFromPage,
+        link: Link,
+    ) -> None:
+        self._candidates_from_page = candidates_from_page
+        self._link = link
+
+    @property
+    def link(self) -> Optional[Link]:
+        return self._link
+
+    def page_candidates(self) -> FoundCandidates:
+        yield from self._candidates_from_page(self._link)
+
+    def file_links(self) -> FoundLinks:
+        return ()
+
+
+def build_source(
+    location: str,
+    *,
+    candidates_from_page: CandidatesFromPage,
+    page_validator: PageValidator,
+    expand_dir: bool,
+    cache_link_parsing: bool,
+    project_name: str,
+) -> Tuple[Optional[str], Optional[LinkSource]]:
+    path: Optional[str] = None
+    url: Optional[str] = None
+    if os.path.exists(location):  # Is a local path.
+        url = path_to_url(location)
+        path = location
+    elif location.startswith("file:"):  # A file: URL.
+        url = location
+        path = url_to_path(location)
+    elif is_url(location):
+        url = location
+
+    if url is None:
+        msg = (
+            "Location '%s' is ignored: "
+            "it is either a non-existing path or lacks a specific scheme."
+        )
+        logger.warning(msg, location)
+        return (None, None)
+
+    if path is None:
+        source: LinkSource = _RemoteFileSource(
+            candidates_from_page=candidates_from_page,
+            page_validator=page_validator,
+            link=Link(url, cache_link_parsing=cache_link_parsing),
+        )
+        return (url, source)
+
+    if os.path.isdir(path):
+        if expand_dir:
+            source = _FlatDirectorySource(
+                candidates_from_page=candidates_from_page,
+                path=path,
+                project_name=project_name,
+            )
+        else:
+            source = _IndexDirectorySource(
+                candidates_from_page=candidates_from_page,
+                link=Link(url, cache_link_parsing=cache_link_parsing),
+            )
+        return (url, source)
+    elif os.path.isfile(path):
+        source = _LocalFileSource(
+            candidates_from_page=candidates_from_page,
+            link=Link(url, cache_link_parsing=cache_link_parsing),
+        )
+        return (url, source)
+    logger.warning(
+        "Location '%s' is ignored: it is neither a file nor a directory.",
+        location,
+    )
+    return (url, None)

galaxy/lib/python3.12/site-packages/pip/_internal/locations/__init__.py

@@ -0,0 +1,467 @@
+import functools
+import logging
+import os
+import pathlib
+import sys
+import sysconfig
+from typing import Any, Dict, Generator, Optional, Tuple
+
+from pip._internal.models.scheme import SCHEME_KEYS, Scheme
+from pip._internal.utils.compat import WINDOWS
+from pip._internal.utils.deprecation import deprecated
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+from . import _sysconfig
+from .base import (
+    USER_CACHE_DIR,
+    get_major_minor_version,
+    get_src_prefix,
+    is_osx_framework,
+    site_packages,
+    user_site,
+)
+
+__all__ = [
+    "USER_CACHE_DIR",
+    "get_bin_prefix",
+    "get_bin_user",
+    "get_major_minor_version",
+    "get_platlib",
+    "get_purelib",
+    "get_scheme",
+    "get_src_prefix",
+    "site_packages",
+    "user_site",
+]
+
+
+logger = logging.getLogger(__name__)
+
+
+_PLATLIBDIR: str = getattr(sys, "platlibdir", "lib")
+
+_USE_SYSCONFIG_DEFAULT = sys.version_info >= (3, 10)
+
+
+def _should_use_sysconfig() -> bool:
+    """This function determines the value of _USE_SYSCONFIG.
+
+    By default, pip uses sysconfig on Python 3.10+.
+    But Python distributors can override this decision by setting:
+        sysconfig._PIP_USE_SYSCONFIG = True / False
+    Rationale in https://github.com/pypa/pip/issues/10647
+
+    This is a function for testability, but should be constant during any one
+    run.
+    """
+    return bool(getattr(sysconfig, "_PIP_USE_SYSCONFIG", _USE_SYSCONFIG_DEFAULT))
+
+
+_USE_SYSCONFIG = _should_use_sysconfig()
+
+if not _USE_SYSCONFIG:
+    # Import distutils lazily to avoid deprecation warnings,
+    # but import it soon enough that it is in memory and available during
+    # a pip reinstall.
+    from . import _distutils
+
+# Be noisy about incompatibilities if this platforms "should" be using
+# sysconfig, but is explicitly opting out and using distutils instead.
+if _USE_SYSCONFIG_DEFAULT and not _USE_SYSCONFIG:
+    _MISMATCH_LEVEL = logging.WARNING
+else:
+    _MISMATCH_LEVEL = logging.DEBUG
+
+
+def _looks_like_bpo_44860() -> bool:
+    """The resolution to bpo-44860 will change this incorrect platlib.
+
+    See <https://bugs.python.org/issue44860>.
+    """
+    from distutils.command.install import INSTALL_SCHEMES
+
+    try:
+        unix_user_platlib = INSTALL_SCHEMES["unix_user"]["platlib"]
+    except KeyError:
+        return False
+    return unix_user_platlib == "$usersite"
+
+
+def _looks_like_red_hat_patched_platlib_purelib(scheme: Dict[str, str]) -> bool:
+    platlib = scheme["platlib"]
+    if "/$platlibdir/" in platlib:
+        platlib = platlib.replace("/$platlibdir/", f"/{_PLATLIBDIR}/")
+    if "/lib64/" not in platlib:
+        return False
+    unpatched = platlib.replace("/lib64/", "/lib/")
+    return unpatched.replace("$platbase/", "$base/") == scheme["purelib"]
+
+
+@functools.lru_cache(maxsize=None)
+def _looks_like_red_hat_lib() -> bool:
+    """Red Hat patches platlib in unix_prefix and unix_home, but not purelib.
+
+    This is the only way I can see to tell a Red Hat-patched Python.
+    """
+    from distutils.command.install import INSTALL_SCHEMES
+
+    return all(
+        k in INSTALL_SCHEMES
+        and _looks_like_red_hat_patched_platlib_purelib(INSTALL_SCHEMES[k])
+        for k in ("unix_prefix", "unix_home")
+    )
+
+
+@functools.lru_cache(maxsize=None)
+def _looks_like_debian_scheme() -> bool:
+    """Debian adds two additional schemes."""
+    from distutils.command.install import INSTALL_SCHEMES
+
+    return "deb_system" in INSTALL_SCHEMES and "unix_local" in INSTALL_SCHEMES
+
+
+@functools.lru_cache(maxsize=None)
+def _looks_like_red_hat_scheme() -> bool:
+    """Red Hat patches ``sys.prefix`` and ``sys.exec_prefix``.
+
+    Red Hat's ``00251-change-user-install-location.patch`` changes the install
+    command's ``prefix`` and ``exec_prefix`` to append ``"/local"``. This is
+    (fortunately?) done quite unconditionally, so we create a default command
+    object without any configuration to detect this.
+    """
+    from distutils.command.install import install
+    from distutils.dist import Distribution
+
+    cmd: Any = install(Distribution())
+    cmd.finalize_options()
+    return (
+        cmd.exec_prefix == f"{os.path.normpath(sys.exec_prefix)}/local"
+        and cmd.prefix == f"{os.path.normpath(sys.prefix)}/local"
+    )
+
+
+@functools.lru_cache(maxsize=None)
+def _looks_like_slackware_scheme() -> bool:
+    """Slackware patches sysconfig but fails to patch distutils and site.
+
+    Slackware changes sysconfig's user scheme to use ``"lib64"`` for the lib
+    path, but does not do the same to the site module.
+    """
+    if user_site is None:  # User-site not available.
+        return False
+    try:
+        paths = sysconfig.get_paths(scheme="posix_user", expand=False)
+    except KeyError:  # User-site not available.
+        return False
+    return "/lib64/" in paths["purelib"] and "/lib64/" not in user_site
+
+
+@functools.lru_cache(maxsize=None)
+def _looks_like_msys2_mingw_scheme() -> bool:
+    """MSYS2 patches distutils and sysconfig to use a UNIX-like scheme.
+
+    However, MSYS2 incorrectly patches sysconfig ``nt`` scheme. The fix is
+    likely going to be included in their 3.10 release, so we ignore the warning.
+    See msys2/MINGW-packages#9319.
+
+    MSYS2 MINGW's patch uses lowercase ``"lib"`` instead of the usual uppercase,
+    and is missing the final ``"site-packages"``.
+    """
+    paths = sysconfig.get_paths("nt", expand=False)
+    return all(
+        "Lib" not in p and "lib" in p and not p.endswith("site-packages")
+        for p in (paths[key] for key in ("platlib", "purelib"))
+    )
+
+
+def _fix_abiflags(parts: Tuple[str]) -> Generator[str, None, None]:
+    ldversion = sysconfig.get_config_var("LDVERSION")
+    abiflags = getattr(sys, "abiflags", None)
+
+    # LDVERSION does not end with sys.abiflags. Just return the path unchanged.
+    if not ldversion or not abiflags or not ldversion.endswith(abiflags):
+        yield from parts
+        return
+
+    # Strip sys.abiflags from LDVERSION-based path components.
+    for part in parts:
+        if part.endswith(ldversion):
+            part = part[: (0 - len(abiflags))]
+        yield part
+
+
+@functools.lru_cache(maxsize=None)
+def _warn_mismatched(old: pathlib.Path, new: pathlib.Path, *, key: str) -> None:
+    issue_url = "https://github.com/pypa/pip/issues/10151"
+    message = (
+        "Value for %s does not match. Please report this to <%s>"
+        "\ndistutils: %s"
+        "\nsysconfig: %s"
+    )
+    logger.log(_MISMATCH_LEVEL, message, key, issue_url, old, new)
+
+
+def _warn_if_mismatch(old: pathlib.Path, new: pathlib.Path, *, key: str) -> bool:
+    if old == new:
+        return False
+    _warn_mismatched(old, new, key=key)
+    return True
+
+
+@functools.lru_cache(maxsize=None)
+def _log_context(
+    *,
+    user: bool = False,
+    home: Optional[str] = None,
+    root: Optional[str] = None,
+    prefix: Optional[str] = None,
+) -> None:
+    parts = [
+        "Additional context:",
+        "user = %r",
+        "home = %r",
+        "root = %r",
+        "prefix = %r",
+    ]
+
+    logger.log(_MISMATCH_LEVEL, "\n".join(parts), user, home, root, prefix)
+
+
+def get_scheme(
+    dist_name: str,
+    user: bool = False,
+    home: Optional[str] = None,
+    root: Optional[str] = None,
+    isolated: bool = False,
+    prefix: Optional[str] = None,
+) -> Scheme:
+    new = _sysconfig.get_scheme(
+        dist_name,
+        user=user,
+        home=home,
+        root=root,
+        isolated=isolated,
+        prefix=prefix,
+    )
+    if _USE_SYSCONFIG:
+        return new
+
+    old = _distutils.get_scheme(
+        dist_name,
+        user=user,
+        home=home,
+        root=root,
+        isolated=isolated,
+        prefix=prefix,
+    )
+
+    warning_contexts = []
+    for k in SCHEME_KEYS:
+        old_v = pathlib.Path(getattr(old, k))
+        new_v = pathlib.Path(getattr(new, k))
+
+        if old_v == new_v:
+            continue
+
+        # distutils incorrectly put PyPy packages under ``site-packages/python``
+        # in the ``posix_home`` scheme, but PyPy devs said they expect the
+        # directory name to be ``pypy`` instead. So we treat this as a bug fix
+        # and not warn about it. See bpo-43307 and python/cpython#24628.
+        skip_pypy_special_case = (
+            sys.implementation.name == "pypy"
+            and home is not None
+            and k in ("platlib", "purelib")
+            and old_v.parent == new_v.parent
+            and old_v.name.startswith("python")
+            and new_v.name.startswith("pypy")
+        )
+        if skip_pypy_special_case:
+            continue
+
+        # sysconfig's ``osx_framework_user`` does not include ``pythonX.Y`` in
+        # the ``include`` value, but distutils's ``headers`` does. We'll let
+        # CPython decide whether this is a bug or feature. See bpo-43948.
+        skip_osx_framework_user_special_case = (
+            user
+            and is_osx_framework()
+            and k == "headers"
+            and old_v.parent.parent == new_v.parent
+            and old_v.parent.name.startswith("python")
+        )
+        if skip_osx_framework_user_special_case:
+            continue
+
+        # On Red Hat and derived Linux distributions, distutils is patched to
+        # use "lib64" instead of "lib" for platlib.
+        if k == "platlib" and _looks_like_red_hat_lib():
+            continue
+
+        # On Python 3.9+, sysconfig's posix_user scheme sets platlib against
+        # sys.platlibdir, but distutils's unix_user incorrectly coninutes
+        # using the same $usersite for both platlib and purelib. This creates a
+        # mismatch when sys.platlibdir is not "lib".
+        skip_bpo_44860 = (
+            user
+            and k == "platlib"
+            and not WINDOWS
+            and sys.version_info >= (3, 9)
+            and _PLATLIBDIR != "lib"
+            and _looks_like_bpo_44860()
+        )
+        if skip_bpo_44860:
+            continue
+
+        # Slackware incorrectly patches posix_user to use lib64 instead of lib,
+        # but not usersite to match the location.
+        skip_slackware_user_scheme = (
+            user
+            and k in ("platlib", "purelib")
+            and not WINDOWS
+            and _looks_like_slackware_scheme()
+        )
+        if skip_slackware_user_scheme:
+            continue
+
+        # Both Debian and Red Hat patch Python to place the system site under
+        # /usr/local instead of /usr. Debian also places lib in dist-packages
+        # instead of site-packages, but the /usr/local check should cover it.
+        skip_linux_system_special_case = (
+            not (user or home or prefix or running_under_virtualenv())
+            and old_v.parts[1:3] == ("usr", "local")
+            and len(new_v.parts) > 1
+            and new_v.parts[1] == "usr"
+            and (len(new_v.parts) < 3 or new_v.parts[2] != "local")
+            and (_looks_like_red_hat_scheme() or _looks_like_debian_scheme())
+        )
+        if skip_linux_system_special_case:
+            continue
+
+        # On Python 3.7 and earlier, sysconfig does not include sys.abiflags in
+        # the "pythonX.Y" part of the path, but distutils does.
+        skip_sysconfig_abiflag_bug = (
+            sys.version_info < (3, 8)
+            and not WINDOWS
+            and k in ("headers", "platlib", "purelib")
+            and tuple(_fix_abiflags(old_v.parts)) == new_v.parts
+        )
+        if skip_sysconfig_abiflag_bug:
+            continue
+
+        # MSYS2 MINGW's sysconfig patch does not include the "site-packages"
+        # part of the path. This is incorrect and will be fixed in MSYS.
+        skip_msys2_mingw_bug = (
+            WINDOWS and k in ("platlib", "purelib") and _looks_like_msys2_mingw_scheme()
+        )
+        if skip_msys2_mingw_bug:
+            continue
+
+        # CPython's POSIX install script invokes pip (via ensurepip) against the
+        # interpreter located in the source tree, not the install site. This
+        # triggers special logic in sysconfig that's not present in distutils.
+        # https://github.com/python/cpython/blob/8c21941ddaf/Lib/sysconfig.py#L178-L194
+        skip_cpython_build = (
+            sysconfig.is_python_build(check_home=True)
+            and not WINDOWS
+            and k in ("headers", "include", "platinclude")
+        )
+        if skip_cpython_build:
+            continue
+
+        warning_contexts.append((old_v, new_v, f"scheme.{k}"))
+
+    if not warning_contexts:
+        return old
+
+    # Check if this path mismatch is caused by distutils config files. Those
+    # files will no longer work once we switch to sysconfig, so this raises a
+    # deprecation message for them.
+    default_old = _distutils.distutils_scheme(
+        dist_name,
+        user,
+        home,
+        root,
+        isolated,
+        prefix,
+        ignore_config_files=True,
+    )
+    if any(default_old[k] != getattr(old, k) for k in SCHEME_KEYS):
+        deprecated(
+            reason=(
+                "Configuring installation scheme with distutils config files "
+                "is deprecated and will no longer work in the near future. If you "
+                "are using a Homebrew or Linuxbrew Python, please see discussion "
+                "at https://github.com/Homebrew/homebrew-core/issues/76621"
+            ),
+            replacement=None,
+            gone_in=None,
+        )
+        return old
+
+    # Post warnings about this mismatch so user can report them back.
+    for old_v, new_v, key in warning_contexts:
+        _warn_mismatched(old_v, new_v, key=key)
+    _log_context(user=user, home=home, root=root, prefix=prefix)
+
+    return old
+
+
+def get_bin_prefix() -> str:
+    new = _sysconfig.get_bin_prefix()
+    if _USE_SYSCONFIG:
+        return new
+
+    old = _distutils.get_bin_prefix()
+    if _warn_if_mismatch(pathlib.Path(old), pathlib.Path(new), key="bin_prefix"):
+        _log_context()
+    return old
+
+
+def get_bin_user() -> str:
+    return _sysconfig.get_scheme("", user=True).scripts
+
+
+def _looks_like_deb_system_dist_packages(value: str) -> bool:
+    """Check if the value is Debian's APT-controlled dist-packages.
+
+    Debian's ``distutils.sysconfig.get_python_lib()`` implementation returns the
+    default package path controlled by APT, but does not patch ``sysconfig`` to
+    do the same. This is similar to the bug worked around in ``get_scheme()``,
+    but here the default is ``deb_system`` instead of ``unix_local``. Ultimately
+    we can't do anything about this Debian bug, and this detection allows us to
+    skip the warning when needed.
+    """
+    if not _looks_like_debian_scheme():
+        return False
+    if value == "/usr/lib/python3/dist-packages":
+        return True
+    return False
+
+
+def get_purelib() -> str:
+    """Return the default pure-Python lib location."""
+    new = _sysconfig.get_purelib()
+    if _USE_SYSCONFIG:
+        return new
+
+    old = _distutils.get_purelib()
+    if _looks_like_deb_system_dist_packages(old):
+        return old
+    if _warn_if_mismatch(pathlib.Path(old), pathlib.Path(new), key="purelib"):
+        _log_context()
+    return old
+
+
+def get_platlib() -> str:
+    """Return the default platform-shared lib location."""
+    new = _sysconfig.get_platlib()
+    if _USE_SYSCONFIG:
+        return new
+
+    from . import _distutils
+
+    old = _distutils.get_platlib()
+    if _looks_like_deb_system_dist_packages(old):
+        return old
+    if _warn_if_mismatch(pathlib.Path(old), pathlib.Path(new), key="platlib"):
+        _log_context()
+    return old

galaxy/lib/python3.12/site-packages/pip/_internal/locations/_distutils.py

@@ -0,0 +1,172 @@
+"""Locations where we look for configs, install stuff, etc"""
+
+# The following comment should be removed at some point in the future.
+# mypy: strict-optional=False
+
+# If pip's going to use distutils, it should not be using the copy that setuptools
+# might have injected into the environment. This is done by removing the injected
+# shim, if it's injected.
+#
+# See https://github.com/pypa/pip/issues/8761 for the original discussion and
+# rationale for why this is done within pip.
+try:
+    __import__("_distutils_hack").remove_shim()
+except (ImportError, AttributeError):
+    pass
+
+import logging
+import os
+import sys
+from distutils.cmd import Command as DistutilsCommand
+from distutils.command.install import SCHEME_KEYS
+from distutils.command.install import install as distutils_install_command
+from distutils.sysconfig import get_python_lib
+from typing import Dict, List, Optional, Union, cast
+
+from pip._internal.models.scheme import Scheme
+from pip._internal.utils.compat import WINDOWS
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+from .base import get_major_minor_version
+
+logger = logging.getLogger(__name__)
+
+
+def distutils_scheme(
+    dist_name: str,
+    user: bool = False,
+    home: Optional[str] = None,
+    root: Optional[str] = None,
+    isolated: bool = False,
+    prefix: Optional[str] = None,
+    *,
+    ignore_config_files: bool = False,
+) -> Dict[str, str]:
+    """
+    Return a distutils install scheme
+    """
+    from distutils.dist import Distribution
+
+    dist_args: Dict[str, Union[str, List[str]]] = {"name": dist_name}
+    if isolated:
+        dist_args["script_args"] = ["--no-user-cfg"]
+
+    d = Distribution(dist_args)
+    if not ignore_config_files:
+        try:
+            d.parse_config_files()
+        except UnicodeDecodeError:
+            paths = d.find_config_files()
+            logger.warning(
+                "Ignore distutils configs in %s due to encoding errors.",
+                ", ".join(os.path.basename(p) for p in paths),
+            )
+    obj: Optional[DistutilsCommand] = None
+    obj = d.get_command_obj("install", create=True)
+    assert obj is not None
+    i = cast(distutils_install_command, obj)
+    # NOTE: setting user or home has the side-effect of creating the home dir
+    # or user base for installations during finalize_options()
+    # ideally, we'd prefer a scheme class that has no side-effects.
+    assert not (user and prefix), f"user={user} prefix={prefix}"
+    assert not (home and prefix), f"home={home} prefix={prefix}"
+    i.user = user or i.user
+    if user or home:
+        i.prefix = ""
+    i.prefix = prefix or i.prefix
+    i.home = home or i.home
+    i.root = root or i.root
+    i.finalize_options()
+
+    scheme = {}
+    for key in SCHEME_KEYS:
+        scheme[key] = getattr(i, "install_" + key)
+
+    # install_lib specified in setup.cfg should install *everything*
+    # into there (i.e. it takes precedence over both purelib and
+    # platlib).  Note, i.install_lib is *always* set after
+    # finalize_options(); we only want to override here if the user
+    # has explicitly requested it hence going back to the config
+    if "install_lib" in d.get_option_dict("install"):
+        scheme.update({"purelib": i.install_lib, "platlib": i.install_lib})
+
+    if running_under_virtualenv():
+        if home:
+            prefix = home
+        elif user:
+            prefix = i.install_userbase
+        else:
+            prefix = i.prefix
+        scheme["headers"] = os.path.join(
+            prefix,
+            "include",
+            "site",
+            f"python{get_major_minor_version()}",
+            dist_name,
+        )
+
+        if root is not None:
+            path_no_drive = os.path.splitdrive(os.path.abspath(scheme["headers"]))[1]
+            scheme["headers"] = os.path.join(root, path_no_drive[1:])
+
+    return scheme
+
+
+def get_scheme(
+    dist_name: str,
+    user: bool = False,
+    home: Optional[str] = None,
+    root: Optional[str] = None,
+    isolated: bool = False,
+    prefix: Optional[str] = None,
+) -> Scheme:
+    """
+    Get the "scheme" corresponding to the input parameters. The distutils
+    documentation provides the context for the available schemes:
+    https://docs.python.org/3/install/index.html#alternate-installation
+
+    :param dist_name: the name of the package to retrieve the scheme for, used
+        in the headers scheme path
+    :param user: indicates to use the "user" scheme
+    :param home: indicates to use the "home" scheme and provides the base
+        directory for the same
+    :param root: root under which other directories are re-based
+    :param isolated: equivalent to --no-user-cfg, i.e. do not consider
+        ~/.pydistutils.cfg (posix) or ~/pydistutils.cfg (non-posix) for
+        scheme paths
+    :param prefix: indicates to use the "prefix" scheme and provides the
+        base directory for the same
+    """
+    scheme = distutils_scheme(dist_name, user, home, root, isolated, prefix)
+    return Scheme(
+        platlib=scheme["platlib"],
+        purelib=scheme["purelib"],
+        headers=scheme["headers"],
+        scripts=scheme["scripts"],
+        data=scheme["data"],
+    )
+
+
+def get_bin_prefix() -> str:
+    # XXX: In old virtualenv versions, sys.prefix can contain '..' components,
+    # so we need to call normpath to eliminate them.
+    prefix = os.path.normpath(sys.prefix)
+    if WINDOWS:
+        bin_py = os.path.join(prefix, "Scripts")
+        # buildout uses 'bin' on Windows too?
+        if not os.path.exists(bin_py):
+            bin_py = os.path.join(prefix, "bin")
+        return bin_py
+    # Forcing to use /usr/local/bin for standard macOS framework installs
+    # Also log to ~/Library/Logs/ for use with the Console.app log viewer
+    if sys.platform[:6] == "darwin" and prefix[:16] == "/System/Library/":
+        return "/usr/local/bin"
+    return os.path.join(prefix, "bin")
+
+
+def get_purelib() -> str:
+    return get_python_lib(plat_specific=False)
+
+
+def get_platlib() -> str:
+    return get_python_lib(plat_specific=True)

galaxy/lib/python3.12/site-packages/pip/_internal/locations/_sysconfig.py

@@ -0,0 +1,213 @@
+import logging
+import os
+import sys
+import sysconfig
+import typing
+
+from pip._internal.exceptions import InvalidSchemeCombination, UserInstallationInvalid
+from pip._internal.models.scheme import SCHEME_KEYS, Scheme
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+from .base import change_root, get_major_minor_version, is_osx_framework
+
+logger = logging.getLogger(__name__)
+
+
+# Notes on _infer_* functions.
+# Unfortunately ``get_default_scheme()`` didn't exist before 3.10, so there's no
+# way to ask things like "what is the '_prefix' scheme on this platform". These
+# functions try to answer that with some heuristics while accounting for ad-hoc
+# platforms not covered by CPython's default sysconfig implementation. If the
+# ad-hoc implementation does not fully implement sysconfig, we'll fall back to
+# a POSIX scheme.
+
+_AVAILABLE_SCHEMES = set(sysconfig.get_scheme_names())
+
+_PREFERRED_SCHEME_API = getattr(sysconfig, "get_preferred_scheme", None)
+
+
+def _should_use_osx_framework_prefix() -> bool:
+    """Check for Apple's ``osx_framework_library`` scheme.
+
+    Python distributed by Apple's Command Line Tools has this special scheme
+    that's used when:
+
+    * This is a framework build.
+    * We are installing into the system prefix.
+
+    This does not account for ``pip install --prefix`` (also means we're not
+    installing to the system prefix), which should use ``posix_prefix``, but
+    logic here means ``_infer_prefix()`` outputs ``osx_framework_library``. But
+    since ``prefix`` is not available for ``sysconfig.get_default_scheme()``,
+    which is the stdlib replacement for ``_infer_prefix()``, presumably Apple
+    wouldn't be able to magically switch between ``osx_framework_library`` and
+    ``posix_prefix``. ``_infer_prefix()`` returning ``osx_framework_library``
+    means its behavior is consistent whether we use the stdlib implementation
+    or our own, and we deal with this special case in ``get_scheme()`` instead.
+    """
+    return (
+        "osx_framework_library" in _AVAILABLE_SCHEMES
+        and not running_under_virtualenv()
+        and is_osx_framework()
+    )
+
+
+def _infer_prefix() -> str:
+    """Try to find a prefix scheme for the current platform.
+
+    This tries:
+
+    * A special ``osx_framework_library`` for Python distributed by Apple's
+      Command Line Tools, when not running in a virtual environment.
+    * Implementation + OS, used by PyPy on Windows (``pypy_nt``).
+    * Implementation without OS, used by PyPy on POSIX (``pypy``).
+    * OS + "prefix", used by CPython on POSIX (``posix_prefix``).
+    * Just the OS name, used by CPython on Windows (``nt``).
+
+    If none of the above works, fall back to ``posix_prefix``.
+    """
+    if _PREFERRED_SCHEME_API:
+        return _PREFERRED_SCHEME_API("prefix")
+    if _should_use_osx_framework_prefix():
+        return "osx_framework_library"
+    implementation_suffixed = f"{sys.implementation.name}_{os.name}"
+    if implementation_suffixed in _AVAILABLE_SCHEMES:
+        return implementation_suffixed
+    if sys.implementation.name in _AVAILABLE_SCHEMES:
+        return sys.implementation.name
+    suffixed = f"{os.name}_prefix"
+    if suffixed in _AVAILABLE_SCHEMES:
+        return suffixed
+    if os.name in _AVAILABLE_SCHEMES:  # On Windows, prefx is just called "nt".
+        return os.name
+    return "posix_prefix"
+
+
+def _infer_user() -> str:
+    """Try to find a user scheme for the current platform."""
+    if _PREFERRED_SCHEME_API:
+        return _PREFERRED_SCHEME_API("user")
+    if is_osx_framework() and not running_under_virtualenv():
+        suffixed = "osx_framework_user"
+    else:
+        suffixed = f"{os.name}_user"
+    if suffixed in _AVAILABLE_SCHEMES:
+        return suffixed
+    if "posix_user" not in _AVAILABLE_SCHEMES:  # User scheme unavailable.
+        raise UserInstallationInvalid()
+    return "posix_user"
+
+
+def _infer_home() -> str:
+    """Try to find a home for the current platform."""
+    if _PREFERRED_SCHEME_API:
+        return _PREFERRED_SCHEME_API("home")
+    suffixed = f"{os.name}_home"
+    if suffixed in _AVAILABLE_SCHEMES:
+        return suffixed
+    return "posix_home"
+
+
+# Update these keys if the user sets a custom home.
+_HOME_KEYS = [
+    "installed_base",
+    "base",
+    "installed_platbase",
+    "platbase",
+    "prefix",
+    "exec_prefix",
+]
+if sysconfig.get_config_var("userbase") is not None:
+    _HOME_KEYS.append("userbase")
+
+
+def get_scheme(
+    dist_name: str,
+    user: bool = False,
+    home: typing.Optional[str] = None,
+    root: typing.Optional[str] = None,
+    isolated: bool = False,
+    prefix: typing.Optional[str] = None,
+) -> Scheme:
+    """
+    Get the "scheme" corresponding to the input parameters.
+
+    :param dist_name: the name of the package to retrieve the scheme for, used
+        in the headers scheme path
+    :param user: indicates to use the "user" scheme
+    :param home: indicates to use the "home" scheme
+    :param root: root under which other directories are re-based
+    :param isolated: ignored, but kept for distutils compatibility (where
+        this controls whether the user-site pydistutils.cfg is honored)
+    :param prefix: indicates to use the "prefix" scheme and provides the
+        base directory for the same
+    """
+    if user and prefix:
+        raise InvalidSchemeCombination("--user", "--prefix")
+    if home and prefix:
+        raise InvalidSchemeCombination("--home", "--prefix")
+
+    if home is not None:
+        scheme_name = _infer_home()
+    elif user:
+        scheme_name = _infer_user()
+    else:
+        scheme_name = _infer_prefix()
+
+    # Special case: When installing into a custom prefix, use posix_prefix
+    # instead of osx_framework_library. See _should_use_osx_framework_prefix()
+    # docstring for details.
+    if prefix is not None and scheme_name == "osx_framework_library":
+        scheme_name = "posix_prefix"
+
+    if home is not None:
+        variables = {k: home for k in _HOME_KEYS}
+    elif prefix is not None:
+        variables = {k: prefix for k in _HOME_KEYS}
+    else:
+        variables = {}
+
+    paths = sysconfig.get_paths(scheme=scheme_name, vars=variables)
+
+    # Logic here is very arbitrary, we're doing it for compatibility, don't ask.
+    # 1. Pip historically uses a special header path in virtual environments.
+    # 2. If the distribution name is not known, distutils uses 'UNKNOWN'. We
+    #    only do the same when not running in a virtual environment because
+    #    pip's historical header path logic (see point 1) did not do this.
+    if running_under_virtualenv():
+        if user:
+            base = variables.get("userbase", sys.prefix)
+        else:
+            base = variables.get("base", sys.prefix)
+        python_xy = f"python{get_major_minor_version()}"
+        paths["include"] = os.path.join(base, "include", "site", python_xy)
+    elif not dist_name:
+        dist_name = "UNKNOWN"
+
+    scheme = Scheme(
+        platlib=paths["platlib"],
+        purelib=paths["purelib"],
+        headers=os.path.join(paths["include"], dist_name),
+        scripts=paths["scripts"],
+        data=paths["data"],
+    )
+    if root is not None:
+        for key in SCHEME_KEYS:
+            value = change_root(root, getattr(scheme, key))
+            setattr(scheme, key, value)
+    return scheme
+
+
+def get_bin_prefix() -> str:
+    # Forcing to use /usr/local/bin for standard macOS framework installs.
+    if sys.platform[:6] == "darwin" and sys.prefix[:16] == "/System/Library/":
+        return "/usr/local/bin"
+    return sysconfig.get_paths()["scripts"]
+
+
+def get_purelib() -> str:
+    return sysconfig.get_paths()["purelib"]
+
+
+def get_platlib() -> str:
+    return sysconfig.get_paths()["platlib"]

galaxy/lib/python3.12/site-packages/pip/_internal/locations/base.py

@@ -0,0 +1,81 @@
+import functools
+import os
+import site
+import sys
+import sysconfig
+import typing
+
+from pip._internal.exceptions import InstallationError
+from pip._internal.utils import appdirs
+from pip._internal.utils.virtualenv import running_under_virtualenv
+
+# Application Directories
+USER_CACHE_DIR = appdirs.user_cache_dir("pip")
+
+# FIXME doesn't account for venv linked to global site-packages
+site_packages: str = sysconfig.get_path("purelib")
+
+
+def get_major_minor_version() -> str:
+    """
+    Return the major-minor version of the current Python as a string, e.g.
+    "3.7" or "3.10".
+    """
+    return "{}.{}".format(*sys.version_info)
+
+
+def change_root(new_root: str, pathname: str) -> str:
+    """Return 'pathname' with 'new_root' prepended.
+
+    If 'pathname' is relative, this is equivalent to os.path.join(new_root, pathname).
+    Otherwise, it requires making 'pathname' relative and then joining the
+    two, which is tricky on DOS/Windows and Mac OS.
+
+    This is borrowed from Python's standard library's distutils module.
+    """
+    if os.name == "posix":
+        if not os.path.isabs(pathname):
+            return os.path.join(new_root, pathname)
+        else:
+            return os.path.join(new_root, pathname[1:])
+
+    elif os.name == "nt":
+        (drive, path) = os.path.splitdrive(pathname)
+        if path[0] == "\\":
+            path = path[1:]
+        return os.path.join(new_root, path)
+
+    else:
+        raise InstallationError(
+            f"Unknown platform: {os.name}\n"
+            "Can not change root path prefix on unknown platform."
+        )
+
+
+def get_src_prefix() -> str:
+    if running_under_virtualenv():
+        src_prefix = os.path.join(sys.prefix, "src")
+    else:
+        # FIXME: keep src in cwd for now (it is not a temporary folder)
+        try:
+            src_prefix = os.path.join(os.getcwd(), "src")
+        except OSError:
+            # In case the current working directory has been renamed or deleted
+            sys.exit("The folder you are executing pip from can no longer be found.")
+
+    # under macOS + virtualenv sys.prefix is not properly resolved
+    # it is something like /path/to/python/bin/..
+    return os.path.abspath(src_prefix)
+
+
+try:
+    # Use getusersitepackages if this is present, as it ensures that the
+    # value is initialised properly.
+    user_site: typing.Optional[str] = site.getusersitepackages()
+except AttributeError:
+    user_site = site.USER_SITE
+
+
+@functools.lru_cache(maxsize=None)
+def is_osx_framework() -> bool:
+    return bool(sysconfig.get_config_var("PYTHONFRAMEWORK"))

galaxy/lib/python3.12/site-packages/pip/_internal/main.py

@@ -0,0 +1,12 @@
+from typing import List, Optional
+
+
+def main(args: Optional[List[str]] = None) -> int:
+    """This is preserved for old console scripts that may still be referencing
+    it.
+
+    For additional details, see https://github.com/pypa/pip/issues/7498.
+    """
+    from pip._internal.utils.entrypoints import _wrapper
+
+    return _wrapper(args)

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/__init__.py

@@ -0,0 +1,128 @@
+import contextlib
+import functools
+import os
+import sys
+from typing import TYPE_CHECKING, List, Optional, Type, cast
+
+from pip._internal.utils.misc import strtobool
+
+from .base import BaseDistribution, BaseEnvironment, FilesystemWheel, MemoryWheel, Wheel
+
+if TYPE_CHECKING:
+    from typing import Literal, Protocol
+else:
+    Protocol = object
+
+__all__ = [
+    "BaseDistribution",
+    "BaseEnvironment",
+    "FilesystemWheel",
+    "MemoryWheel",
+    "Wheel",
+    "get_default_environment",
+    "get_environment",
+    "get_wheel_distribution",
+    "select_backend",
+]
+
+
+def _should_use_importlib_metadata() -> bool:
+    """Whether to use the ``importlib.metadata`` or ``pkg_resources`` backend.
+
+    By default, pip uses ``importlib.metadata`` on Python 3.11+, and
+    ``pkg_resourcess`` otherwise. This can be overridden by a couple of ways:
+
+    * If environment variable ``_PIP_USE_IMPORTLIB_METADATA`` is set, it
+      dictates whether ``importlib.metadata`` is used, regardless of Python
+      version.
+    * On Python 3.11+, Python distributors can patch ``importlib.metadata``
+      to add a global constant ``_PIP_USE_IMPORTLIB_METADATA = False``. This
+      makes pip use ``pkg_resources`` (unless the user set the aforementioned
+      environment variable to *True*).
+    """
+    with contextlib.suppress(KeyError, ValueError):
+        return bool(strtobool(os.environ["_PIP_USE_IMPORTLIB_METADATA"]))
+    if sys.version_info < (3, 11):
+        return False
+    import importlib.metadata
+
+    return bool(getattr(importlib.metadata, "_PIP_USE_IMPORTLIB_METADATA", True))
+
+
+class Backend(Protocol):
+    NAME: 'Literal["importlib", "pkg_resources"]'
+    Distribution: Type[BaseDistribution]
+    Environment: Type[BaseEnvironment]
+
+
+@functools.lru_cache(maxsize=None)
+def select_backend() -> Backend:
+    if _should_use_importlib_metadata():
+        from . import importlib
+
+        return cast(Backend, importlib)
+    from . import pkg_resources
+
+    return cast(Backend, pkg_resources)
+
+
+def get_default_environment() -> BaseEnvironment:
+    """Get the default representation for the current environment.
+
+    This returns an Environment instance from the chosen backend. The default
+    Environment instance should be built from ``sys.path`` and may use caching
+    to share instance state accorss calls.
+    """
+    return select_backend().Environment.default()
+
+
+def get_environment(paths: Optional[List[str]]) -> BaseEnvironment:
+    """Get a representation of the environment specified by ``paths``.
+
+    This returns an Environment instance from the chosen backend based on the
+    given import paths. The backend must build a fresh instance representing
+    the state of installed distributions when this function is called.
+    """
+    return select_backend().Environment.from_paths(paths)
+
+
+def get_directory_distribution(directory: str) -> BaseDistribution:
+    """Get the distribution metadata representation in the specified directory.
+
+    This returns a Distribution instance from the chosen backend based on
+    the given on-disk ``.dist-info`` directory.
+    """
+    return select_backend().Distribution.from_directory(directory)
+
+
+def get_wheel_distribution(wheel: Wheel, canonical_name: str) -> BaseDistribution:
+    """Get the representation of the specified wheel's distribution metadata.
+
+    This returns a Distribution instance from the chosen backend based on
+    the given wheel's ``.dist-info`` directory.
+
+    :param canonical_name: Normalized project name of the given wheel.
+    """
+    return select_backend().Distribution.from_wheel(wheel, canonical_name)
+
+
+def get_metadata_distribution(
+    metadata_contents: bytes,
+    filename: str,
+    canonical_name: str,
+) -> BaseDistribution:
+    """Get the dist representation of the specified METADATA file contents.
+
+    This returns a Distribution instance from the chosen backend sourced from the data
+    in `metadata_contents`.
+
+    :param metadata_contents: Contents of a METADATA file within a dist, or one served
+                              via PEP 658.
+    :param filename: Filename for the dist this metadata represents.
+    :param canonical_name: Normalized project name of the given dist.
+    """
+    return select_backend().Distribution.from_metadata_file_contents(
+        metadata_contents,
+        filename,
+        canonical_name,
+    )

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/_json.py

@@ -0,0 +1,84 @@
+# Extracted from https://github.com/pfmoore/pkg_metadata
+
+from email.header import Header, decode_header, make_header
+from email.message import Message
+from typing import Any, Dict, List, Union
+
+METADATA_FIELDS = [
+    # Name, Multiple-Use
+    ("Metadata-Version", False),
+    ("Name", False),
+    ("Version", False),
+    ("Dynamic", True),
+    ("Platform", True),
+    ("Supported-Platform", True),
+    ("Summary", False),
+    ("Description", False),
+    ("Description-Content-Type", False),
+    ("Keywords", False),
+    ("Home-page", False),
+    ("Download-URL", False),
+    ("Author", False),
+    ("Author-email", False),
+    ("Maintainer", False),
+    ("Maintainer-email", False),
+    ("License", False),
+    ("Classifier", True),
+    ("Requires-Dist", True),
+    ("Requires-Python", False),
+    ("Requires-External", True),
+    ("Project-URL", True),
+    ("Provides-Extra", True),
+    ("Provides-Dist", True),
+    ("Obsoletes-Dist", True),
+]
+
+
+def json_name(field: str) -> str:
+    return field.lower().replace("-", "_")
+
+
+def msg_to_json(msg: Message) -> Dict[str, Any]:
+    """Convert a Message object into a JSON-compatible dictionary."""
+
+    def sanitise_header(h: Union[Header, str]) -> str:
+        if isinstance(h, Header):
+            chunks = []
+            for bytes, encoding in decode_header(h):
+                if encoding == "unknown-8bit":
+                    try:
+                        # See if UTF-8 works
+                        bytes.decode("utf-8")
+                        encoding = "utf-8"
+                    except UnicodeDecodeError:
+                        # If not, latin1 at least won't fail
+                        encoding = "latin1"
+                chunks.append((bytes, encoding))
+            return str(make_header(chunks))
+        return str(h)
+
+    result = {}
+    for field, multi in METADATA_FIELDS:
+        if field not in msg:
+            continue
+        key = json_name(field)
+        if multi:
+            value: Union[str, List[str]] = [
+                sanitise_header(v) for v in msg.get_all(field)  # type: ignore
+            ]
+        else:
+            value = sanitise_header(msg.get(field))  # type: ignore
+            if key == "keywords":
+                # Accept both comma-separated and space-separated
+                # forms, for better compatibility with old data.
+                if "," in value:
+                    value = [v.strip() for v in value.split(",")]
+                else:
+                    value = value.split()
+        result[key] = value
+
+    payload = msg.get_payload()
+    if payload:
+        result["description"] = payload
+
+    return result

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/base.py

@@ -0,0 +1,702 @@
+import csv
+import email.message
+import functools
+import json
+import logging
+import pathlib
+import re
+import zipfile
+from typing import (
+    IO,
+    TYPE_CHECKING,
+    Any,
+    Collection,
+    Container,
+    Dict,
+    Iterable,
+    Iterator,
+    List,
+    NamedTuple,
+    Optional,
+    Tuple,
+    Union,
+)
+
+from pip._vendor.packaging.requirements import Requirement
+from pip._vendor.packaging.specifiers import InvalidSpecifier, SpecifierSet
+from pip._vendor.packaging.utils import NormalizedName, canonicalize_name
+from pip._vendor.packaging.version import LegacyVersion, Version
+
+from pip._internal.exceptions import NoneMetadataError
+from pip._internal.locations import site_packages, user_site
+from pip._internal.models.direct_url import (
+    DIRECT_URL_METADATA_NAME,
+    DirectUrl,
+    DirectUrlValidationError,
+)
+from pip._internal.utils.compat import stdlib_pkgs  # TODO: Move definition here.
+from pip._internal.utils.egg_link import egg_link_path_from_sys_path
+from pip._internal.utils.misc import is_local, normalize_path
+from pip._internal.utils.urls import url_to_path
+
+from ._json import msg_to_json
+
+if TYPE_CHECKING:
+    from typing import Protocol
+else:
+    Protocol = object
+
+DistributionVersion = Union[LegacyVersion, Version]
+
+InfoPath = Union[str, pathlib.PurePath]
+
+logger = logging.getLogger(__name__)
+
+
+class BaseEntryPoint(Protocol):
+    @property
+    def name(self) -> str:
+        raise NotImplementedError()
+
+    @property
+    def value(self) -> str:
+        raise NotImplementedError()
+
+    @property
+    def group(self) -> str:
+        raise NotImplementedError()
+
+
+def _convert_installed_files_path(
+    entry: Tuple[str, ...],
+    info: Tuple[str, ...],
+) -> str:
+    """Convert a legacy installed-files.txt path into modern RECORD path.
+
+    The legacy format stores paths relative to the info directory, while the
+    modern format stores paths relative to the package root, e.g. the
+    site-packages directory.
+
+    :param entry: Path parts of the installed-files.txt entry.
+    :param info: Path parts of the egg-info directory relative to package root.
+    :returns: The converted entry.
+
+    For best compatibility with symlinks, this does not use ``abspath()`` or
+    ``Path.resolve()``, but tries to work with path parts:
+
+    1. While ``entry`` starts with ``..``, remove the equal amounts of parts
+       from ``info``; if ``info`` is empty, start appending ``..`` instead.
+    2. Join the two directly.
+    """
+    while entry and entry[0] == "..":
+        if not info or info[-1] == "..":
+            info += ("..",)
+        else:
+            info = info[:-1]
+        entry = entry[1:]
+    return str(pathlib.Path(*info, *entry))
+
+
+class RequiresEntry(NamedTuple):
+    requirement: str
+    extra: str
+    marker: str
+
+
+class BaseDistribution(Protocol):
+    @classmethod
+    def from_directory(cls, directory: str) -> "BaseDistribution":
+        """Load the distribution from a metadata directory.
+
+        :param directory: Path to a metadata directory, e.g. ``.dist-info``.
+        """
+        raise NotImplementedError()
+
+    @classmethod
+    def from_metadata_file_contents(
+        cls,
+        metadata_contents: bytes,
+        filename: str,
+        project_name: str,
+    ) -> "BaseDistribution":
+        """Load the distribution from the contents of a METADATA file.
+
+        This is used to implement PEP 658 by generating a "shallow" dist object that can
+        be used for resolution without downloading or building the actual dist yet.
+
+        :param metadata_contents: The contents of a METADATA file.
+        :param filename: File name for the dist with this metadata.
+        :param project_name: Name of the project this dist represents.
+        """
+        raise NotImplementedError()
+
+    @classmethod
+    def from_wheel(cls, wheel: "Wheel", name: str) -> "BaseDistribution":
+        """Load the distribution from a given wheel.
+
+        :param wheel: A concrete wheel definition.
+        :param name: File name of the wheel.
+
+        :raises InvalidWheel: Whenever loading of the wheel causes a
+            :py:exc:`zipfile.BadZipFile` exception to be thrown.
+        :raises UnsupportedWheel: If the wheel is a valid zip, but malformed
+            internally.
+        """
+        raise NotImplementedError()
+
+    def __repr__(self) -> str:
+        return f"{self.raw_name} {self.version} ({self.location})"
+
+    def __str__(self) -> str:
+        return f"{self.raw_name} {self.version}"
+
+    @property
+    def location(self) -> Optional[str]:
+        """Where the distribution is loaded from.
+
+        A string value is not necessarily a filesystem path, since distributions
+        can be loaded from other sources, e.g. arbitrary zip archives. ``None``
+        means the distribution is created in-memory.
+
+        Do not canonicalize this value with e.g. ``pathlib.Path.resolve()``. If
+        this is a symbolic link, we want to preserve the relative path between
+        it and files in the distribution.
+        """
+        raise NotImplementedError()
+
+    @property
+    def editable_project_location(self) -> Optional[str]:
+        """The project location for editable distributions.
+
+        This is the directory where pyproject.toml or setup.py is located.
+        None if the distribution is not installed in editable mode.
+        """
+        # TODO: this property is relatively costly to compute, memoize it ?
+        direct_url = self.direct_url
+        if direct_url:
+            if direct_url.is_local_editable():
+                return url_to_path(direct_url.url)
+        else:
+            # Search for an .egg-link file by walking sys.path, as it was
+            # done before by dist_is_editable().
+            egg_link_path = egg_link_path_from_sys_path(self.raw_name)
+            if egg_link_path:
+                # TODO: get project location from second line of egg_link file
+                #       (https://github.com/pypa/pip/issues/10243)
+                return self.location
+        return None
+
+    @property
+    def installed_location(self) -> Optional[str]:
+        """The distribution's "installed" location.
+
+        This should generally be a ``site-packages`` directory. This is
+        usually ``dist.location``, except for legacy develop-installed packages,
+        where ``dist.location`` is the source code location, and this is where
+        the ``.egg-link`` file is.
+
+        The returned location is normalized (in particular, with symlinks removed).
+        """
+        raise NotImplementedError()
+
+    @property
+    def info_location(self) -> Optional[str]:
+        """Location of the .[egg|dist]-info directory or file.
+
+        Similarly to ``location``, a string value is not necessarily a
+        filesystem path. ``None`` means the distribution is created in-memory.
+
+        For a modern .dist-info installation on disk, this should be something
+        like ``{location}/{raw_name}-{version}.dist-info``.
+
+        Do not canonicalize this value with e.g. ``pathlib.Path.resolve()``. If
+        this is a symbolic link, we want to preserve the relative path between
+        it and other files in the distribution.
+        """
+        raise NotImplementedError()
+
+    @property
+    def installed_by_distutils(self) -> bool:
+        """Whether this distribution is installed with legacy distutils format.
+
+        A distribution installed with "raw" distutils not patched by setuptools
+        uses one single file at ``info_location`` to store metadata. We need to
+        treat this specially on uninstallation.
+        """
+        info_location = self.info_location
+        if not info_location:
+            return False
+        return pathlib.Path(info_location).is_file()
+
+    @property
+    def installed_as_egg(self) -> bool:
+        """Whether this distribution is installed as an egg.
+
+        This usually indicates the distribution was installed by (older versions
+        of) easy_install.
+        """
+        location = self.location
+        if not location:
+            return False
+        return location.endswith(".egg")
+
+    @property
+    def installed_with_setuptools_egg_info(self) -> bool:
+        """Whether this distribution is installed with the ``.egg-info`` format.
+
+        This usually indicates the distribution was installed with setuptools
+        with an old pip version or with ``single-version-externally-managed``.
+
+        Note that this ensure the metadata store is a directory. distutils can
+        also installs an ``.egg-info``, but as a file, not a directory. This
+        property is *False* for that case. Also see ``installed_by_distutils``.
+        """
+        info_location = self.info_location
+        if not info_location:
+            return False
+        if not info_location.endswith(".egg-info"):
+            return False
+        return pathlib.Path(info_location).is_dir()
+
+    @property
+    def installed_with_dist_info(self) -> bool:
+        """Whether this distribution is installed with the "modern format".
+
+        This indicates a "modern" installation, e.g. storing metadata in the
+        ``.dist-info`` directory. This applies to installations made by
+        setuptools (but through pip, not directly), or anything using the
+        standardized build backend interface (PEP 517).
+        """
+        info_location = self.info_location
+        if not info_location:
+            return False
+        if not info_location.endswith(".dist-info"):
+            return False
+        return pathlib.Path(info_location).is_dir()
+
+    @property
+    def canonical_name(self) -> NormalizedName:
+        raise NotImplementedError()
+
+    @property
+    def version(self) -> DistributionVersion:
+        raise NotImplementedError()
+
+    @property
+    def setuptools_filename(self) -> str:
+        """Convert a project name to its setuptools-compatible filename.
+
+        This is a copy of ``pkg_resources.to_filename()`` for compatibility.
+        """
+        return self.raw_name.replace("-", "_")
+
+    @property
+    def direct_url(self) -> Optional[DirectUrl]:
+        """Obtain a DirectUrl from this distribution.
+
+        Returns None if the distribution has no `direct_url.json` metadata,
+        or if `direct_url.json` is invalid.
+        """
+        try:
+            content = self.read_text(DIRECT_URL_METADATA_NAME)
+        except FileNotFoundError:
+            return None
+        try:
+            return DirectUrl.from_json(content)
+        except (
+            UnicodeDecodeError,
+            json.JSONDecodeError,
+            DirectUrlValidationError,
+        ) as e:
+            logger.warning(
+                "Error parsing %s for %s: %s",
+                DIRECT_URL_METADATA_NAME,
+                self.canonical_name,
+                e,
+            )
+            return None
+
+    @property
+    def installer(self) -> str:
+        try:
+            installer_text = self.read_text("INSTALLER")
+        except (OSError, ValueError, NoneMetadataError):
+            return ""  # Fail silently if the installer file cannot be read.
+        for line in installer_text.splitlines():
+            cleaned_line = line.strip()
+            if cleaned_line:
+                return cleaned_line
+        return ""
+
+    @property
+    def requested(self) -> bool:
+        return self.is_file("REQUESTED")
+
+    @property
+    def editable(self) -> bool:
+        return bool(self.editable_project_location)
+
+    @property
+    def local(self) -> bool:
+        """If distribution is installed in the current virtual environment.
+
+        Always True if we're not in a virtualenv.
+        """
+        if self.installed_location is None:
+            return False
+        return is_local(self.installed_location)
+
+    @property
+    def in_usersite(self) -> bool:
+        if self.installed_location is None or user_site is None:
+            return False
+        return self.installed_location.startswith(normalize_path(user_site))
+
+    @property
+    def in_site_packages(self) -> bool:
+        if self.installed_location is None or site_packages is None:
+            return False
+        return self.installed_location.startswith(normalize_path(site_packages))
+
+    def is_file(self, path: InfoPath) -> bool:
+        """Check whether an entry in the info directory is a file."""
+        raise NotImplementedError()
+
+    def iter_distutils_script_names(self) -> Iterator[str]:
+        """Find distutils 'scripts' entries metadata.
+
+        If 'scripts' is supplied in ``setup.py``, distutils records those in the
+        installed distribution's ``scripts`` directory, a file for each script.
+        """
+        raise NotImplementedError()
+
+    def read_text(self, path: InfoPath) -> str:
+        """Read a file in the info directory.
+
+        :raise FileNotFoundError: If ``path`` does not exist in the directory.
+        :raise NoneMetadataError: If ``path`` exists in the info directory, but
+            cannot be read.
+        """
+        raise NotImplementedError()
+
+    def iter_entry_points(self) -> Iterable[BaseEntryPoint]:
+        raise NotImplementedError()
+
+    def _metadata_impl(self) -> email.message.Message:
+        raise NotImplementedError()
+
+    @functools.lru_cache(maxsize=1)
+    def _metadata_cached(self) -> email.message.Message:
+        # When we drop python 3.7 support, move this to the metadata property and use
+        # functools.cached_property instead of lru_cache.
+        metadata = self._metadata_impl()
+        self._add_egg_info_requires(metadata)
+        return metadata
+
+    @property
+    def metadata(self) -> email.message.Message:
+        """Metadata of distribution parsed from e.g. METADATA or PKG-INFO.
+
+        This should return an empty message if the metadata file is unavailable.
+
+        :raises NoneMetadataError: If the metadata file is available, but does
+            not contain valid metadata.
+        """
+        return self._metadata_cached()
+
+    @property
+    def metadata_dict(self) -> Dict[str, Any]:
+        """PEP 566 compliant JSON-serializable representation of METADATA or PKG-INFO.
+
+        This should return an empty dict if the metadata file is unavailable.
+
+        :raises NoneMetadataError: If the metadata file is available, but does
+            not contain valid metadata.
+        """
+        return msg_to_json(self.metadata)
+
+    @property
+    def metadata_version(self) -> Optional[str]:
+        """Value of "Metadata-Version:" in distribution metadata, if available."""
+        return self.metadata.get("Metadata-Version")
+
+    @property
+    def raw_name(self) -> str:
+        """Value of "Name:" in distribution metadata."""
+        # The metadata should NEVER be missing the Name: key, but if it somehow
+        # does, fall back to the known canonical name.
+        return self.metadata.get("Name", self.canonical_name)
+
+    @property
+    def requires_python(self) -> SpecifierSet:
+        """Value of "Requires-Python:" in distribution metadata.
+
+        If the key does not exist or contains an invalid value, an empty
+        SpecifierSet should be returned.
+        """
+        value = self.metadata.get("Requires-Python")
+        if value is None:
+            return SpecifierSet()
+        try:
+            # Convert to str to satisfy the type checker; this can be a Header object.
+            spec = SpecifierSet(str(value))
+        except InvalidSpecifier as e:
+            message = "Package %r has an invalid Requires-Python: %s"
+            logger.warning(message, self.raw_name, e)
+            return SpecifierSet()
+        return spec
+
+    def iter_dependencies(self, extras: Collection[str] = ()) -> Iterable[Requirement]:
+        """Dependencies of this distribution.
+
+        For modern .dist-info distributions, this is the collection of
+        "Requires-Dist:" entries in distribution metadata.
+        """
+        raise NotImplementedError()
+
+    def iter_provided_extras(self) -> Iterable[str]:
+        """Extras provided by this distribution.
+
+        For modern .dist-info distributions, this is the collection of
+        "Provides-Extra:" entries in distribution metadata.
+
+        The return value of this function is not particularly useful other than
+        display purposes due to backward compatibility issues and the extra
+        names being poorly normalized prior to PEP 685. If you want to perform
+        logic operations on extras, use :func:`is_extra_provided` instead.
+        """
+        raise NotImplementedError()
+
+    def is_extra_provided(self, extra: str) -> bool:
+        """Check whether an extra is provided by this distribution.
+
+        This is needed mostly for compatibility issues with pkg_resources not
+        following the extra normalization rules defined in PEP 685.
+        """
+        raise NotImplementedError()
+
+    def _iter_declared_entries_from_record(self) -> Optional[Iterator[str]]:
+        try:
+            text = self.read_text("RECORD")
+        except FileNotFoundError:
+            return None
+        # This extra Path-str cast normalizes entries.
+        return (str(pathlib.Path(row[0])) for row in csv.reader(text.splitlines()))
+
+    def _iter_declared_entries_from_legacy(self) -> Optional[Iterator[str]]:
+        try:
+            text = self.read_text("installed-files.txt")
+        except FileNotFoundError:
+            return None
+        paths = (p for p in text.splitlines(keepends=False) if p)
+        root = self.location
+        info = self.info_location
+        if root is None or info is None:
+            return paths
+        try:
+            info_rel = pathlib.Path(info).relative_to(root)
+        except ValueError:  # info is not relative to root.
+            return paths
+        if not info_rel.parts:  # info *is* root.
+            return paths
+        return (
+            _convert_installed_files_path(pathlib.Path(p).parts, info_rel.parts)
+            for p in paths
+        )
+
+    def iter_declared_entries(self) -> Optional[Iterator[str]]:
+        """Iterate through file entries declared in this distribution.
+
+        For modern .dist-info distributions, this is the files listed in the
+        ``RECORD`` metadata file. For legacy setuptools distributions, this
+        comes from ``installed-files.txt``, with entries normalized to be
+        compatible with the format used by ``RECORD``.
+
+        :return: An iterator for listed entries, or None if the distribution
+            contains neither ``RECORD`` nor ``installed-files.txt``.
+        """
+        return (
+            self._iter_declared_entries_from_record()
+            or self._iter_declared_entries_from_legacy()
+        )
+
+    def _iter_requires_txt_entries(self) -> Iterator[RequiresEntry]:
+        """Parse a ``requires.txt`` in an egg-info directory.
+
+        This is an INI-ish format where an egg-info stores dependencies. A
+        section name describes extra other environment markers, while each entry
+        is an arbitrary string (not a key-value pair) representing a dependency
+        as a requirement string (no markers).
+
+        There is a construct in ``importlib.metadata`` called ``Sectioned`` that
+        does mostly the same, but the format is currently considered private.
+        """
+        try:
+            content = self.read_text("requires.txt")
+        except FileNotFoundError:
+            return
+        extra = marker = ""  # Section-less entries don't have markers.
+        for line in content.splitlines():
+            line = line.strip()
+            if not line or line.startswith("#"):  # Comment; ignored.
+                continue
+            if line.startswith("[") and line.endswith("]"):  # A section header.
+                extra, _, marker = line.strip("[]").partition(":")
+                continue
+            yield RequiresEntry(requirement=line, extra=extra, marker=marker)
+
+    def _iter_egg_info_extras(self) -> Iterable[str]:
+        """Get extras from the egg-info directory."""
+        known_extras = {""}
+        for entry in self._iter_requires_txt_entries():
+            extra = canonicalize_name(entry.extra)
+            if extra in known_extras:
+                continue
+            known_extras.add(extra)
+            yield extra
+
+    def _iter_egg_info_dependencies(self) -> Iterable[str]:
+        """Get distribution dependencies from the egg-info directory.
+
+        To ease parsing, this converts a legacy dependency entry into a PEP 508
+        requirement string. Like ``_iter_requires_txt_entries()``, there is code
+        in ``importlib.metadata`` that does mostly the same, but not do exactly
+        what we need.
+
+        Namely, ``importlib.metadata`` does not normalize the extra name before
+        putting it into the requirement string, which causes marker comparison
+        to fail because the dist-info format do normalize. This is consistent in
+        all currently available PEP 517 backends, although not standardized.
+        """
+        for entry in self._iter_requires_txt_entries():
+            extra = canonicalize_name(entry.extra)
+            if extra and entry.marker:
+                marker = f'({entry.marker}) and extra == "{extra}"'
+            elif extra:
+                marker = f'extra == "{extra}"'
+            elif entry.marker:
+                marker = entry.marker
+            else:
+                marker = ""
+            if marker:
+                yield f"{entry.requirement} ; {marker}"
+            else:
+                yield entry.requirement
+
+    def _add_egg_info_requires(self, metadata: email.message.Message) -> None:
+        """Add egg-info requires.txt information to the metadata."""
+        if not metadata.get_all("Requires-Dist"):
+            for dep in self._iter_egg_info_dependencies():
+                metadata["Requires-Dist"] = dep
+        if not metadata.get_all("Provides-Extra"):
+            for extra in self._iter_egg_info_extras():
+                metadata["Provides-Extra"] = extra
+
+
+class BaseEnvironment:
+    """An environment containing distributions to introspect."""
+
+    @classmethod
+    def default(cls) -> "BaseEnvironment":
+        raise NotImplementedError()
+
+    @classmethod
+    def from_paths(cls, paths: Optional[List[str]]) -> "BaseEnvironment":
+        raise NotImplementedError()
+
+    def get_distribution(self, name: str) -> Optional["BaseDistribution"]:
+        """Given a requirement name, return the installed distributions.
+
+        The name may not be normalized. The implementation must canonicalize
+        it for lookup.
+        """
+        raise NotImplementedError()
+
+    def _iter_distributions(self) -> Iterator["BaseDistribution"]:
+        """Iterate through installed distributions.
+
+        This function should be implemented by subclass, but never called
+        directly. Use the public ``iter_distribution()`` instead, which
+        implements additional logic to make sure the distributions are valid.
+        """
+        raise NotImplementedError()
+
+    def iter_all_distributions(self) -> Iterator[BaseDistribution]:
+        """Iterate through all installed distributions without any filtering."""
+        for dist in self._iter_distributions():
+            # Make sure the distribution actually comes from a valid Python
+            # packaging distribution. Pip's AdjacentTempDirectory leaves folders
+            # e.g. ``~atplotlib.dist-info`` if cleanup was interrupted. The
+            # valid project name pattern is taken from PEP 508.
+            project_name_valid = re.match(
+                r"^([A-Z0-9]|[A-Z0-9][A-Z0-9._-]*[A-Z0-9])$",
+                dist.canonical_name,
+                flags=re.IGNORECASE,
+            )
+            if not project_name_valid:
+                logger.warning(
+                    "Ignoring invalid distribution %s (%s)",
+                    dist.canonical_name,
+                    dist.location,
+                )
+                continue
+            yield dist
+
+    def iter_installed_distributions(
+        self,
+        local_only: bool = True,
+        skip: Container[str] = stdlib_pkgs,
+        include_editables: bool = True,
+        editables_only: bool = False,
+        user_only: bool = False,
+    ) -> Iterator[BaseDistribution]:
+        """Return a list of installed distributions.
+
+        This is based on ``iter_all_distributions()`` with additional filtering
+        options. Note that ``iter_installed_distributions()`` without arguments
+        is *not* equal to ``iter_all_distributions()``, since some of the
+        configurations exclude packages by default.
+
+        :param local_only: If True (default), only return installations
+        local to the current virtualenv, if in a virtualenv.
+        :param skip: An iterable of canonicalized project names to ignore;
+            defaults to ``stdlib_pkgs``.
+        :param include_editables: If False, don't report editables.
+        :param editables_only: If True, only report editables.
+        :param user_only: If True, only report installations in the user
+        site directory.
+        """
+        it = self.iter_all_distributions()
+        if local_only:
+            it = (d for d in it if d.local)
+        if not include_editables:
+            it = (d for d in it if not d.editable)
+        if editables_only:
+            it = (d for d in it if d.editable)
+        if user_only:
+            it = (d for d in it if d.in_usersite)
+        return (d for d in it if d.canonical_name not in skip)
+
+
+class Wheel(Protocol):
+    location: str
+
+    def as_zipfile(self) -> zipfile.ZipFile:
+        raise NotImplementedError()
+
+
+class FilesystemWheel(Wheel):
+    def __init__(self, location: str) -> None:
+        self.location = location
+
+    def as_zipfile(self) -> zipfile.ZipFile:
+        return zipfile.ZipFile(self.location, allowZip64=True)
+
+
+class MemoryWheel(Wheel):
+    def __init__(self, location: str, stream: IO[bytes]) -> None:
+        self.location = location
+        self.stream = stream
+
+    def as_zipfile(self) -> zipfile.ZipFile:
+        return zipfile.ZipFile(self.stream, allowZip64=True)

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/importlib/__init__.py

@@ -0,0 +1,6 @@
+from ._dists import Distribution
+from ._envs import Environment
+
+__all__ = ["NAME", "Distribution", "Environment"]
+
+NAME = "importlib"

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/importlib/_compat.py

@@ -0,0 +1,55 @@
+import importlib.metadata
+from typing import Any, Optional, Protocol, cast
+
+
+class BadMetadata(ValueError):
+    def __init__(self, dist: importlib.metadata.Distribution, *, reason: str) -> None:
+        self.dist = dist
+        self.reason = reason
+
+    def __str__(self) -> str:
+        return f"Bad metadata in {self.dist} ({self.reason})"
+
+
+class BasePath(Protocol):
+    """A protocol that various path objects conform.
+
+    This exists because importlib.metadata uses both ``pathlib.Path`` and
+    ``zipfile.Path``, and we need a common base for type hints (Union does not
+    work well since ``zipfile.Path`` is too new for our linter setup).
+
+    This does not mean to be exhaustive, but only contains things that present
+    in both classes *that we need*.
+    """
+
+    @property
+    def name(self) -> str:
+        raise NotImplementedError()
+
+    @property
+    def parent(self) -> "BasePath":
+        raise NotImplementedError()
+
+
+def get_info_location(d: importlib.metadata.Distribution) -> Optional[BasePath]:
+    """Find the path to the distribution's metadata directory.
+
+    HACK: This relies on importlib.metadata's private ``_path`` attribute. Not
+    all distributions exist on disk, so importlib.metadata is correct to not
+    expose the attribute as public. But pip's code base is old and not as clean,
+    so we do this to avoid having to rewrite too many things. Hopefully we can
+    eliminate this some day.
+    """
+    return getattr(d, "_path", None)
+
+
+def get_dist_name(dist: importlib.metadata.Distribution) -> str:
+    """Get the distribution's project name.
+
+    The ``name`` attribute is only available in Python 3.10 or later. We are
+    targeting exactly that, but Mypy does not know this.
+    """
+    name = cast(Any, dist).name
+    if not isinstance(name, str):
+        raise BadMetadata(dist, reason="invalid metadata entry 'name'")
+    return name

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/importlib/_dists.py

@@ -0,0 +1,227 @@
+import email.message
+import importlib.metadata
+import os
+import pathlib
+import zipfile
+from typing import (
+    Collection,
+    Dict,
+    Iterable,
+    Iterator,
+    Mapping,
+    Optional,
+    Sequence,
+    cast,
+)
+
+from pip._vendor.packaging.requirements import Requirement
+from pip._vendor.packaging.utils import NormalizedName, canonicalize_name
+from pip._vendor.packaging.version import parse as parse_version
+
+from pip._internal.exceptions import InvalidWheel, UnsupportedWheel
+from pip._internal.metadata.base import (
+    BaseDistribution,
+    BaseEntryPoint,
+    DistributionVersion,
+    InfoPath,
+    Wheel,
+)
+from pip._internal.utils.misc import normalize_path
+from pip._internal.utils.temp_dir import TempDirectory
+from pip._internal.utils.wheel import parse_wheel, read_wheel_metadata_file
+
+from ._compat import BasePath, get_dist_name
+
+
+class WheelDistribution(importlib.metadata.Distribution):
+    """An ``importlib.metadata.Distribution`` read from a wheel.
+
+    Although ``importlib.metadata.PathDistribution`` accepts ``zipfile.Path``,
+    its implementation is too "lazy" for pip's needs (we can't keep the ZipFile
+    handle open for the entire lifetime of the distribution object).
+
+    This implementation eagerly reads the entire metadata directory into the
+    memory instead, and operates from that.
+    """
+
+    def __init__(
+        self,
+        files: Mapping[pathlib.PurePosixPath, bytes],
+        info_location: pathlib.PurePosixPath,
+    ) -> None:
+        self._files = files
+        self.info_location = info_location
+
+    @classmethod
+    def from_zipfile(
+        cls,
+        zf: zipfile.ZipFile,
+        name: str,
+        location: str,
+    ) -> "WheelDistribution":
+        info_dir, _ = parse_wheel(zf, name)
+        paths = (
+            (name, pathlib.PurePosixPath(name.split("/", 1)[-1]))
+            for name in zf.namelist()
+            if name.startswith(f"{info_dir}/")
+        )
+        files = {
+            relpath: read_wheel_metadata_file(zf, fullpath)
+            for fullpath, relpath in paths
+        }
+        info_location = pathlib.PurePosixPath(location, info_dir)
+        return cls(files, info_location)
+
+    def iterdir(self, path: InfoPath) -> Iterator[pathlib.PurePosixPath]:
+        # Only allow iterating through the metadata directory.
+        if pathlib.PurePosixPath(str(path)) in self._files:
+            return iter(self._files)
+        raise FileNotFoundError(path)
+
+    def read_text(self, filename: str) -> Optional[str]:
+        try:
+            data = self._files[pathlib.PurePosixPath(filename)]
+        except KeyError:
+            return None
+        try:
+            text = data.decode("utf-8")
+        except UnicodeDecodeError as e:
+            wheel = self.info_location.parent
+            error = f"Error decoding metadata for {wheel}: {e} in {filename} file"
+            raise UnsupportedWheel(error)
+        return text
+
+
+class Distribution(BaseDistribution):
+    def __init__(
+        self,
+        dist: importlib.metadata.Distribution,
+        info_location: Optional[BasePath],
+        installed_location: Optional[BasePath],
+    ) -> None:
+        self._dist = dist
+        self._info_location = info_location
+        self._installed_location = installed_location
+
+    @classmethod
+    def from_directory(cls, directory: str) -> BaseDistribution:
+        info_location = pathlib.Path(directory)
+        dist = importlib.metadata.Distribution.at(info_location)
+        return cls(dist, info_location, info_location.parent)
+
+    @classmethod
+    def from_metadata_file_contents(
+        cls,
+        metadata_contents: bytes,
+        filename: str,
+        project_name: str,
+    ) -> BaseDistribution:
+        # Generate temp dir to contain the metadata file, and write the file contents.
+        temp_dir = pathlib.Path(
+            TempDirectory(kind="metadata", globally_managed=True).path
+        )
+        metadata_path = temp_dir / "METADATA"
+        metadata_path.write_bytes(metadata_contents)
+        # Construct dist pointing to the newly created directory.
+        dist = importlib.metadata.Distribution.at(metadata_path.parent)
+        return cls(dist, metadata_path.parent, None)
+
+    @classmethod
+    def from_wheel(cls, wheel: Wheel, name: str) -> BaseDistribution:
+        try:
+            with wheel.as_zipfile() as zf:
+                dist = WheelDistribution.from_zipfile(zf, name, wheel.location)
+        except zipfile.BadZipFile as e:
+            raise InvalidWheel(wheel.location, name) from e
+        except UnsupportedWheel as e:
+            raise UnsupportedWheel(f"{name} has an invalid wheel, {e}")
+        return cls(dist, dist.info_location, pathlib.PurePosixPath(wheel.location))
+
+    @property
+    def location(self) -> Optional[str]:
+        if self._info_location is None:
+            return None
+        return str(self._info_location.parent)
+
+    @property
+    def info_location(self) -> Optional[str]:
+        if self._info_location is None:
+            return None
+        return str(self._info_location)
+
+    @property
+    def installed_location(self) -> Optional[str]:
+        if self._installed_location is None:
+            return None
+        return normalize_path(str(self._installed_location))
+
+    def _get_dist_name_from_location(self) -> Optional[str]:
+        """Try to get the name from the metadata directory name.
+
+        This is much faster than reading metadata.
+        """
+        if self._info_location is None:
+            return None
+        stem, suffix = os.path.splitext(self._info_location.name)
+        if suffix not in (".dist-info", ".egg-info"):
+            return None
+        return stem.split("-", 1)[0]
+
+    @property
+    def canonical_name(self) -> NormalizedName:
+        name = self._get_dist_name_from_location() or get_dist_name(self._dist)
+        return canonicalize_name(name)
+
+    @property
+    def version(self) -> DistributionVersion:
+        return parse_version(self._dist.version)
+
+    def is_file(self, path: InfoPath) -> bool:
+        return self._dist.read_text(str(path)) is not None
+
+    def iter_distutils_script_names(self) -> Iterator[str]:
+        # A distutils installation is always "flat" (not in e.g. egg form), so
+        # if this distribution's info location is NOT a pathlib.Path (but e.g.
+        # zipfile.Path), it can never contain any distutils scripts.
+        if not isinstance(self._info_location, pathlib.Path):
+            return
+        for child in self._info_location.joinpath("scripts").iterdir():
+            yield child.name
+
+    def read_text(self, path: InfoPath) -> str:
+        content = self._dist.read_text(str(path))
+        if content is None:
+            raise FileNotFoundError(path)
+        return content
+
+    def iter_entry_points(self) -> Iterable[BaseEntryPoint]:
+        # importlib.metadata's EntryPoint structure sasitfies BaseEntryPoint.
+        return self._dist.entry_points
+
+    def _metadata_impl(self) -> email.message.Message:
+        # From Python 3.10+, importlib.metadata declares PackageMetadata as the
+        # return type. This protocol is unfortunately a disaster now and misses
+        # a ton of fields that we need, including get() and get_payload(). We
+        # rely on the implementation that the object is actually a Message now,
+        # until upstream can improve the protocol. (python/cpython#94952)
+        return cast(email.message.Message, self._dist.metadata)
+
+    def iter_provided_extras(self) -> Iterable[str]:
+        return self.metadata.get_all("Provides-Extra", [])
+
+    def is_extra_provided(self, extra: str) -> bool:
+        return any(
+            canonicalize_name(provided_extra) == canonicalize_name(extra)
+            for provided_extra in self.metadata.get_all("Provides-Extra", [])
+        )
+
+    def iter_dependencies(self, extras: Collection[str] = ()) -> Iterable[Requirement]:
+        contexts: Sequence[Dict[str, str]] = [{"extra": e} for e in extras]
+        for req_string in self.metadata.get_all("Requires-Dist", []):
+            req = Requirement(req_string)
+            if not req.marker:
+                yield req
+            elif not extras and req.marker.evaluate({"extra": ""}):
+                yield req
+            elif any(req.marker.evaluate(context) for context in contexts):
+                yield req

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/importlib/_envs.py

@@ -0,0 +1,189 @@
+import functools
+import importlib.metadata
+import logging
+import os
+import pathlib
+import sys
+import zipfile
+import zipimport
+from typing import Iterator, List, Optional, Sequence, Set, Tuple
+
+from pip._vendor.packaging.utils import NormalizedName, canonicalize_name
+
+from pip._internal.metadata.base import BaseDistribution, BaseEnvironment
+from pip._internal.models.wheel import Wheel
+from pip._internal.utils.deprecation import deprecated
+from pip._internal.utils.filetypes import WHEEL_EXTENSION
+
+from ._compat import BadMetadata, BasePath, get_dist_name, get_info_location
+from ._dists import Distribution
+
+logger = logging.getLogger(__name__)
+
+
+def _looks_like_wheel(location: str) -> bool:
+    if not location.endswith(WHEEL_EXTENSION):
+        return False
+    if not os.path.isfile(location):
+        return False
+    if not Wheel.wheel_file_re.match(os.path.basename(location)):
+        return False
+    return zipfile.is_zipfile(location)
+
+
+class _DistributionFinder:
+    """Finder to locate distributions.
+
+    The main purpose of this class is to memoize found distributions' names, so
+    only one distribution is returned for each package name. At lot of pip code
+    assumes this (because it is setuptools's behavior), and not doing the same
+    can potentially cause a distribution in lower precedence path to override a
+    higher precedence one if the caller is not careful.
+
+    Eventually we probably want to make it possible to see lower precedence
+    installations as well. It's useful feature, after all.
+    """
+
+    FoundResult = Tuple[importlib.metadata.Distribution, Optional[BasePath]]
+
+    def __init__(self) -> None:
+        self._found_names: Set[NormalizedName] = set()
+
+    def _find_impl(self, location: str) -> Iterator[FoundResult]:
+        """Find distributions in a location."""
+        # Skip looking inside a wheel. Since a package inside a wheel is not
+        # always valid (due to .data directories etc.), its .dist-info entry
+        # should not be considered an installed distribution.
+        if _looks_like_wheel(location):
+            return
+        # To know exactly where we find a distribution, we have to feed in the
+        # paths one by one, instead of dumping the list to importlib.metadata.
+        for dist in importlib.metadata.distributions(path=[location]):
+            info_location = get_info_location(dist)
+            try:
+                raw_name = get_dist_name(dist)
+            except BadMetadata as e:
+                logger.warning("Skipping %s due to %s", info_location, e.reason)
+                continue
+            normalized_name = canonicalize_name(raw_name)
+            if normalized_name in self._found_names:
+                continue
+            self._found_names.add(normalized_name)
+            yield dist, info_location
+
+    def find(self, location: str) -> Iterator[BaseDistribution]:
+        """Find distributions in a location.
+
+        The path can be either a directory, or a ZIP archive.
+        """
+        for dist, info_location in self._find_impl(location):
+            if info_location is None:
+                installed_location: Optional[BasePath] = None
+            else:
+                installed_location = info_location.parent
+            yield Distribution(dist, info_location, installed_location)
+
+    def find_linked(self, location: str) -> Iterator[BaseDistribution]:
+        """Read location in egg-link files and return distributions in there.
+
+        The path should be a directory; otherwise this returns nothing. This
+        follows how setuptools does this for compatibility. The first non-empty
+        line in the egg-link is read as a path (resolved against the egg-link's
+        containing directory if relative). Distributions found at that linked
+        location are returned.
+        """
+        path = pathlib.Path(location)
+        if not path.is_dir():
+            return
+        for child in path.iterdir():
+            if child.suffix != ".egg-link":
+                continue
+            with child.open() as f:
+                lines = (line.strip() for line in f)
+                target_rel = next((line for line in lines if line), "")
+            if not target_rel:
+                continue
+            target_location = str(path.joinpath(target_rel))
+            for dist, info_location in self._find_impl(target_location):
+                yield Distribution(dist, info_location, path)
+
+    def _find_eggs_in_dir(self, location: str) -> Iterator[BaseDistribution]:
+        from pip._vendor.pkg_resources import find_distributions
+
+        from pip._internal.metadata import pkg_resources as legacy
+
+        with os.scandir(location) as it:
+            for entry in it:
+                if not entry.name.endswith(".egg"):
+                    continue
+                for dist in find_distributions(entry.path):
+                    yield legacy.Distribution(dist)
+
+    def _find_eggs_in_zip(self, location: str) -> Iterator[BaseDistribution]:
+        from pip._vendor.pkg_resources import find_eggs_in_zip
+
+        from pip._internal.metadata import pkg_resources as legacy
+
+        try:
+            importer = zipimport.zipimporter(location)
+        except zipimport.ZipImportError:
+            return
+        for dist in find_eggs_in_zip(importer, location):
+            yield legacy.Distribution(dist)
+
+    def find_eggs(self, location: str) -> Iterator[BaseDistribution]:
+        """Find eggs in a location.
+
+        This actually uses the old *pkg_resources* backend. We likely want to
+        deprecate this so we can eventually remove the *pkg_resources*
+        dependency entirely. Before that, this should first emit a deprecation
+        warning for some versions when using the fallback since importing
+        *pkg_resources* is slow for those who don't need it.
+        """
+        if os.path.isdir(location):
+            yield from self._find_eggs_in_dir(location)
+        if zipfile.is_zipfile(location):
+            yield from self._find_eggs_in_zip(location)
+
+
+@functools.lru_cache(maxsize=None)  # Warn a distribution exactly once.
+def _emit_egg_deprecation(location: Optional[str]) -> None:
+    deprecated(
+        reason=f"Loading egg at {location} is deprecated.",
+        replacement="to use pip for package installation.",
+        gone_in="24.3",
+        issue=12330,
+    )
+
+
+class Environment(BaseEnvironment):
+    def __init__(self, paths: Sequence[str]) -> None:
+        self._paths = paths
+
+    @classmethod
+    def default(cls) -> BaseEnvironment:
+        return cls(sys.path)
+
+    @classmethod
+    def from_paths(cls, paths: Optional[List[str]]) -> BaseEnvironment:
+        if paths is None:
+            return cls(sys.path)
+        return cls(paths)
+
+    def _iter_distributions(self) -> Iterator[BaseDistribution]:
+        finder = _DistributionFinder()
+        for location in self._paths:
+            yield from finder.find(location)
+            for dist in finder.find_eggs(location):
+                _emit_egg_deprecation(dist.location)
+                yield dist
+            # This must go last because that's how pkg_resources tie-breaks.
+            yield from finder.find_linked(location)
+
+    def get_distribution(self, name: str) -> Optional[BaseDistribution]:
+        matches = (
+            distribution
+            for distribution in self.iter_all_distributions()
+            if distribution.canonical_name == canonicalize_name(name)
+        )
+        return next(matches, None)

galaxy/lib/python3.12/site-packages/pip/_internal/metadata/pkg_resources.py

@@ -0,0 +1,278 @@
+import email.message
+import email.parser
+import logging
+import os
+import zipfile
+from typing import Collection, Iterable, Iterator, List, Mapping, NamedTuple, Optional
+
+from pip._vendor import pkg_resources
+from pip._vendor.packaging.requirements import Requirement
+from pip._vendor.packaging.utils import NormalizedName, canonicalize_name
+from pip._vendor.packaging.version import parse as parse_version
+
+from pip._internal.exceptions import InvalidWheel, NoneMetadataError, UnsupportedWheel
+from pip._internal.utils.egg_link import egg_link_path_from_location
+from pip._internal.utils.misc import display_path, normalize_path
+from pip._internal.utils.wheel import parse_wheel, read_wheel_metadata_file
+
+from .base import (
+    BaseDistribution,
+    BaseEntryPoint,
+    BaseEnvironment,
+    DistributionVersion,
+    InfoPath,
+    Wheel,
+)
+
+__all__ = ["NAME", "Distribution", "Environment"]
+
+logger = logging.getLogger(__name__)
+
+NAME = "pkg_resources"
+
+
+class EntryPoint(NamedTuple):
+    name: str
+    value: str
+    group: str
+
+
+class InMemoryMetadata:
+    """IMetadataProvider that reads metadata files from a dictionary.
+
+    This also maps metadata decoding exceptions to our internal exception type.
+    """
+
+    def __init__(self, metadata: Mapping[str, bytes], wheel_name: str) -> None:
+        self._metadata = metadata
+        self._wheel_name = wheel_name
+
+    def has_metadata(self, name: str) -> bool:
+        return name in self._metadata
+
+    def get_metadata(self, name: str) -> str:
+        try:
+            return self._metadata[name].decode()
+        except UnicodeDecodeError as e:
+            # Augment the default error with the origin of the file.
+            raise UnsupportedWheel(
+                f"Error decoding metadata for {self._wheel_name}: {e} in {name} file"
+            )
+
+    def get_metadata_lines(self, name: str) -> Iterable[str]:
+        return pkg_resources.yield_lines(self.get_metadata(name))
+
+    def metadata_isdir(self, name: str) -> bool:
+        return False
+
+    def metadata_listdir(self, name: str) -> List[str]:
+        return []
+
+    def run_script(self, script_name: str, namespace: str) -> None:
+        pass
+
+
+class Distribution(BaseDistribution):
+    def __init__(self, dist: pkg_resources.Distribution) -> None:
+        self._dist = dist
+
+    @classmethod
+    def from_directory(cls, directory: str) -> BaseDistribution:
+        dist_dir = directory.rstrip(os.sep)
+
+        # Build a PathMetadata object, from path to metadata. :wink:
+        base_dir, dist_dir_name = os.path.split(dist_dir)
+        metadata = pkg_resources.PathMetadata(base_dir, dist_dir)
+
+        # Determine the correct Distribution object type.
+        if dist_dir.endswith(".egg-info"):
+            dist_cls = pkg_resources.Distribution
+            dist_name = os.path.splitext(dist_dir_name)[0]
+        else:
+            assert dist_dir.endswith(".dist-info")
+            dist_cls = pkg_resources.DistInfoDistribution
+            dist_name = os.path.splitext(dist_dir_name)[0].split("-")[0]
+
+        dist = dist_cls(base_dir, project_name=dist_name, metadata=metadata)
+        return cls(dist)
+
+    @classmethod
+    def from_metadata_file_contents(
+        cls,
+        metadata_contents: bytes,
+        filename: str,
+        project_name: str,
+    ) -> BaseDistribution:
+        metadata_dict = {
+            "METADATA": metadata_contents,
+        }
+        dist = pkg_resources.DistInfoDistribution(
+            location=filename,
+            metadata=InMemoryMetadata(metadata_dict, filename),
+            project_name=project_name,
+        )
+        return cls(dist)
+
+    @classmethod
+    def from_wheel(cls, wheel: Wheel, name: str) -> BaseDistribution:
+        try:
+            with wheel.as_zipfile() as zf:
+                info_dir, _ = parse_wheel(zf, name)
+                metadata_dict = {
+                    path.split("/", 1)[-1]: read_wheel_metadata_file(zf, path)
+                    for path in zf.namelist()
+                    if path.startswith(f"{info_dir}/")
+                }
+        except zipfile.BadZipFile as e:
+            raise InvalidWheel(wheel.location, name) from e
+        except UnsupportedWheel as e:
+            raise UnsupportedWheel(f"{name} has an invalid wheel, {e}")
+        dist = pkg_resources.DistInfoDistribution(
+            location=wheel.location,
+            metadata=InMemoryMetadata(metadata_dict, wheel.location),
+            project_name=name,
+        )
+        return cls(dist)
+
+    @property
+    def location(self) -> Optional[str]:
+        return self._dist.location
+
+    @property
+    def installed_location(self) -> Optional[str]:
+        egg_link = egg_link_path_from_location(self.raw_name)
+        if egg_link:
+            location = egg_link
+        elif self.location:
+            location = self.location
+        else:
+            return None
+        return normalize_path(location)
+
+    @property
+    def info_location(self) -> Optional[str]:
+        return self._dist.egg_info
+
+    @property
+    def installed_by_distutils(self) -> bool:
+        # A distutils-installed distribution is provided by FileMetadata. This
+        # provider has a "path" attribute not present anywhere else. Not the
+        # best introspection logic, but pip has been doing this for a long time.
+        try:
+            return bool(self._dist._provider.path)
+        except AttributeError:
+            return False
+
+    @property
+    def canonical_name(self) -> NormalizedName:
+        return canonicalize_name(self._dist.project_name)
+
+    @property
+    def version(self) -> DistributionVersion:
+        return parse_version(self._dist.version)
+
+    def is_file(self, path: InfoPath) -> bool:
+        return self._dist.has_metadata(str(path))
+
+    def iter_distutils_script_names(self) -> Iterator[str]:
+        yield from self._dist.metadata_listdir("scripts")
+
+    def read_text(self, path: InfoPath) -> str:
+        name = str(path)
+        if not self._dist.has_metadata(name):
+            raise FileNotFoundError(name)
+        content = self._dist.get_metadata(name)
+        if content is None:
+            raise NoneMetadataError(self, name)
+        return content
+
+    def iter_entry_points(self) -> Iterable[BaseEntryPoint]:
+        for group, entries in self._dist.get_entry_map().items():
+            for name, entry_point in entries.items():
+                name, _, value = str(entry_point).partition("=")
+                yield EntryPoint(name=name.strip(), value=value.strip(), group=group)
+
+    def _metadata_impl(self) -> email.message.Message:
+        """
+        :raises NoneMetadataError: if the distribution reports `has_metadata()`
+            True but `get_metadata()` returns None.
+        """
+        if isinstance(self._dist, pkg_resources.DistInfoDistribution):
+            metadata_name = "METADATA"
+        else:
+            metadata_name = "PKG-INFO"
+        try:
+            metadata = self.read_text(metadata_name)
+        except FileNotFoundError:
+            if self.location:
+                displaying_path = display_path(self.location)
+            else:
+                displaying_path = repr(self.location)
+            logger.warning("No metadata found in %s", displaying_path)
+            metadata = ""
+        feed_parser = email.parser.FeedParser()
+        feed_parser.feed(metadata)
+        return feed_parser.close()
+
+    def iter_dependencies(self, extras: Collection[str] = ()) -> Iterable[Requirement]:
+        if extras:  # pkg_resources raises on invalid extras, so we sanitize.
+            extras = frozenset(pkg_resources.safe_extra(e) for e in extras)
+            extras = extras.intersection(self._dist.extras)
+        return self._dist.requires(extras)
+
+    def iter_provided_extras(self) -> Iterable[str]:
+        return self._dist.extras
+
+    def is_extra_provided(self, extra: str) -> bool:
+        return pkg_resources.safe_extra(extra) in self._dist.extras
+
+
+class Environment(BaseEnvironment):
+    def __init__(self, ws: pkg_resources.WorkingSet) -> None:
+        self._ws = ws
+
+    @classmethod
+    def default(cls) -> BaseEnvironment:
+        return cls(pkg_resources.working_set)
+
+    @classmethod
+    def from_paths(cls, paths: Optional[List[str]]) -> BaseEnvironment:
+        return cls(pkg_resources.WorkingSet(paths))
+
+    def _iter_distributions(self) -> Iterator[BaseDistribution]:
+        for dist in self._ws:
+            yield Distribution(dist)
+
+    def _search_distribution(self, name: str) -> Optional[BaseDistribution]:
+        """Find a distribution matching the ``name`` in the environment.
+
+        This searches from *all* distributions available in the environment, to
+        match the behavior of ``pkg_resources.get_distribution()``.
+        """
+        canonical_name = canonicalize_name(name)
+        for dist in self.iter_all_distributions():
+            if dist.canonical_name == canonical_name:
+                return dist
+        return None
+
+    def get_distribution(self, name: str) -> Optional[BaseDistribution]:
+        # Search the distribution by looking through the working set.
+        dist = self._search_distribution(name)
+        if dist:
+            return dist
+
+        # If distribution could not be found, call working_set.require to
+        # update the working set, and try to find the distribution again.
+        # This might happen for e.g. when you install a package twice, once
+        # using setup.py develop and again using setup.py install. Now when
+        # running pip uninstall twice, the package gets removed from the
+        # working set in the first uninstall, so we have to populate the
+        # working set again so that pip knows about it and the packages gets
+        # picked up and is successfully uninstalled the second time too.
+        try:
+            # We didn't pass in any version specifiers, so this can never
+            # raise pkg_resources.VersionConflict.
+            self._ws.require(name)
+        except pkg_resources.DistributionNotFound:
+            return None
+        return self._search_distribution(name)

galaxy/lib/python3.12/site-packages/pip/_internal/models/__init__.py

@@ -0,0 +1,2 @@
+"""A package that contains models that represent entities.
+"""

galaxy/lib/python3.12/site-packages/pip/_internal/models/candidate.py

@@ -0,0 +1,30 @@
+from pip._vendor.packaging.version import parse as parse_version
+
+from pip._internal.models.link import Link
+from pip._internal.utils.models import KeyBasedCompareMixin
+
+
+class InstallationCandidate(KeyBasedCompareMixin):
+    """Represents a potential "candidate" for installation."""
+
+    __slots__ = ["name", "version", "link"]
+
+    def __init__(self, name: str, version: str, link: Link) -> None:
+        self.name = name
+        self.version = parse_version(version)
+        self.link = link
+
+        super().__init__(
+            key=(self.name, self.version, self.link),
+            defining_class=InstallationCandidate,
+        )
+
+    def __repr__(self) -> str:
+        return "<InstallationCandidate({!r}, {!r}, {!r})>".format(
+            self.name,
+            self.version,
+            self.link,
+        )
+
+    def __str__(self) -> str:
+        return f"{self.name!r} candidate (version {self.version} at {self.link})"

galaxy/lib/python3.12/site-packages/pip/_internal/models/direct_url.py

@@ -0,0 +1,235 @@
+""" PEP 610 """
+import json
+import re
+import urllib.parse
+from typing import Any, Dict, Iterable, Optional, Type, TypeVar, Union
+
+__all__ = [
+    "DirectUrl",
+    "DirectUrlValidationError",
+    "DirInfo",
+    "ArchiveInfo",
+    "VcsInfo",
+]
+
+T = TypeVar("T")
+
+DIRECT_URL_METADATA_NAME = "direct_url.json"
+ENV_VAR_RE = re.compile(r"^\$\{[A-Za-z0-9-_]+\}(:\$\{[A-Za-z0-9-_]+\})?$")
+
+
+class DirectUrlValidationError(Exception):
+    pass
+
+
+def _get(
+    d: Dict[str, Any], expected_type: Type[T], key: str, default: Optional[T] = None
+) -> Optional[T]:
+    """Get value from dictionary and verify expected type."""
+    if key not in d:
+        return default
+    value = d[key]
+    if not isinstance(value, expected_type):
+        raise DirectUrlValidationError(
+            f"{value!r} has unexpected type for {key} (expected {expected_type})"
+        )
+    return value
+
+
+def _get_required(
+    d: Dict[str, Any], expected_type: Type[T], key: str, default: Optional[T] = None
+) -> T:
+    value = _get(d, expected_type, key, default)
+    if value is None:
+        raise DirectUrlValidationError(f"{key} must have a value")
+    return value
+
+
+def _exactly_one_of(infos: Iterable[Optional["InfoType"]]) -> "InfoType":
+    infos = [info for info in infos if info is not None]
+    if not infos:
+        raise DirectUrlValidationError(
+            "missing one of archive_info, dir_info, vcs_info"
+        )
+    if len(infos) > 1:
+        raise DirectUrlValidationError(
+            "more than one of archive_info, dir_info, vcs_info"
+        )
+    assert infos[0] is not None
+    return infos[0]
+
+
+def _filter_none(**kwargs: Any) -> Dict[str, Any]:
+    """Make dict excluding None values."""
+    return {k: v for k, v in kwargs.items() if v is not None}
+
+
+class VcsInfo:
+    name = "vcs_info"
+
+    def __init__(
+        self,
+        vcs: str,
+        commit_id: str,
+        requested_revision: Optional[str] = None,
+    ) -> None:
+        self.vcs = vcs
+        self.requested_revision = requested_revision
+        self.commit_id = commit_id
+
+    @classmethod
+    def _from_dict(cls, d: Optional[Dict[str, Any]]) -> Optional["VcsInfo"]:
+        if d is None:
+            return None
+        return cls(
+            vcs=_get_required(d, str, "vcs"),
+            commit_id=_get_required(d, str, "commit_id"),
+            requested_revision=_get(d, str, "requested_revision"),
+        )
+
+    def _to_dict(self) -> Dict[str, Any]:
+        return _filter_none(
+            vcs=self.vcs,
+            requested_revision=self.requested_revision,
+            commit_id=self.commit_id,
+        )
+
+
+class ArchiveInfo:
+    name = "archive_info"
+
+    def __init__(
+        self,
+        hash: Optional[str] = None,
+        hashes: Optional[Dict[str, str]] = None,
+    ) -> None:
+        # set hashes before hash, since the hash setter will further populate hashes
+        self.hashes = hashes
+        self.hash = hash
+
+    @property
+    def hash(self) -> Optional[str]:
+        return self._hash
+
+    @hash.setter
+    def hash(self, value: Optional[str]) -> None:
+        if value is not None:
+            # Auto-populate the hashes key to upgrade to the new format automatically.
+            # We don't back-populate the legacy hash key from hashes.
+            try:
+                hash_name, hash_value = value.split("=", 1)
+            except ValueError:
+                raise DirectUrlValidationError(
+                    f"invalid archive_info.hash format: {value!r}"
+                )
+            if self.hashes is None:
+                self.hashes = {hash_name: hash_value}
+            elif hash_name not in self.hashes:
+                self.hashes = self.hashes.copy()
+                self.hashes[hash_name] = hash_value
+        self._hash = value
+
+    @classmethod
+    def _from_dict(cls, d: Optional[Dict[str, Any]]) -> Optional["ArchiveInfo"]:
+        if d is None:
+            return None
+        return cls(hash=_get(d, str, "hash"), hashes=_get(d, dict, "hashes"))
+
+    def _to_dict(self) -> Dict[str, Any]:
+        return _filter_none(hash=self.hash, hashes=self.hashes)
+
+
+class DirInfo:
+    name = "dir_info"
+
+    def __init__(
+        self,
+        editable: bool = False,
+    ) -> None:
+        self.editable = editable
+
+    @classmethod
+    def _from_dict(cls, d: Optional[Dict[str, Any]]) -> Optional["DirInfo"]:
+        if d is None:
+            return None
+        return cls(editable=_get_required(d, bool, "editable", default=False))
+
+    def _to_dict(self) -> Dict[str, Any]:
+        return _filter_none(editable=self.editable or None)
+
+
+InfoType = Union[ArchiveInfo, DirInfo, VcsInfo]
+
+
+class DirectUrl:
+    def __init__(
+        self,
+        url: str,
+        info: InfoType,
+        subdirectory: Optional[str] = None,
+    ) -> None:
+        self.url = url
+        self.info = info
+        self.subdirectory = subdirectory
+
+    def _remove_auth_from_netloc(self, netloc: str) -> str:
+        if "@" not in netloc:
+            return netloc
+        user_pass, netloc_no_user_pass = netloc.split("@", 1)
+        if (
+            isinstance(self.info, VcsInfo)
+            and self.info.vcs == "git"
+            and user_pass == "git"
+        ):
+            return netloc
+        if ENV_VAR_RE.match(user_pass):
+            return netloc
+        return netloc_no_user_pass
+
+    @property
+    def redacted_url(self) -> str:
+        """url with user:password part removed unless it is formed with
+        environment variables as specified in PEP 610, or it is ``git``
+        in the case of a git URL.
+        """
+        purl = urllib.parse.urlsplit(self.url)
+        netloc = self._remove_auth_from_netloc(purl.netloc)
+        surl = urllib.parse.urlunsplit(
+            (purl.scheme, netloc, purl.path, purl.query, purl.fragment)
+        )
+        return surl
+
+    def validate(self) -> None:
+        self.from_dict(self.to_dict())
+
+    @classmethod
+    def from_dict(cls, d: Dict[str, Any]) -> "DirectUrl":
+        return DirectUrl(
+            url=_get_required(d, str, "url"),
+            subdirectory=_get(d, str, "subdirectory"),
+            info=_exactly_one_of(
+                [
+                    ArchiveInfo._from_dict(_get(d, dict, "archive_info")),
+                    DirInfo._from_dict(_get(d, dict, "dir_info")),
+                    VcsInfo._from_dict(_get(d, dict, "vcs_info")),
+                ]
+            ),
+        )
+
+    def to_dict(self) -> Dict[str, Any]:
+        res = _filter_none(
+            url=self.redacted_url,
+            subdirectory=self.subdirectory,
+        )
+        res[self.info.name] = self.info._to_dict()
+        return res
+
+    @classmethod
+    def from_json(cls, s: str) -> "DirectUrl":
+        return cls.from_dict(json.loads(s))
+
+    def to_json(self) -> str:
+        return json.dumps(self.to_dict(), sort_keys=True)
+
+    def is_local_editable(self) -> bool:
+        return isinstance(self.info, DirInfo) and self.info.editable

galaxy/lib/python3.12/site-packages/pip/_internal/models/format_control.py

@@ -0,0 +1,78 @@
+from typing import FrozenSet, Optional, Set
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.exceptions import CommandError
+
+
+class FormatControl:
+    """Helper for managing formats from which a package can be installed."""
+
+    __slots__ = ["no_binary", "only_binary"]
+
+    def __init__(
+        self,
+        no_binary: Optional[Set[str]] = None,
+        only_binary: Optional[Set[str]] = None,
+    ) -> None:
+        if no_binary is None:
+            no_binary = set()
+        if only_binary is None:
+            only_binary = set()
+
+        self.no_binary = no_binary
+        self.only_binary = only_binary
+
+    def __eq__(self, other: object) -> bool:
+        if not isinstance(other, self.__class__):
+            return NotImplemented
+
+        if self.__slots__ != other.__slots__:
+            return False
+
+        return all(getattr(self, k) == getattr(other, k) for k in self.__slots__)
+
+    def __repr__(self) -> str:
+        return f"{self.__class__.__name__}({self.no_binary}, {self.only_binary})"
+
+    @staticmethod
+    def handle_mutual_excludes(value: str, target: Set[str], other: Set[str]) -> None:
+        if value.startswith("-"):
+            raise CommandError(
+                "--no-binary / --only-binary option requires 1 argument."
+            )
+        new = value.split(",")
+        while ":all:" in new:
+            other.clear()
+            target.clear()
+            target.add(":all:")
+            del new[: new.index(":all:") + 1]
+            # Without a none, we want to discard everything as :all: covers it
+            if ":none:" not in new:
+                return
+        for name in new:
+            if name == ":none:":
+                target.clear()
+                continue
+            name = canonicalize_name(name)
+            other.discard(name)
+            target.add(name)
+
+    def get_allowed_formats(self, canonical_name: str) -> FrozenSet[str]:
+        result = {"binary", "source"}
+        if canonical_name in self.only_binary:
+            result.discard("source")
+        elif canonical_name in self.no_binary:
+            result.discard("binary")
+        elif ":all:" in self.only_binary:
+            result.discard("source")
+        elif ":all:" in self.no_binary:
+            result.discard("binary")
+        return frozenset(result)
+
+    def disallow_binaries(self) -> None:
+        self.handle_mutual_excludes(
+            ":all:",
+            self.no_binary,
+            self.only_binary,
+        )

galaxy/lib/python3.12/site-packages/pip/_internal/models/index.py

@@ -0,0 +1,28 @@
+import urllib.parse
+
+
+class PackageIndex:
+    """Represents a Package Index and provides easier access to endpoints"""
+
+    __slots__ = ["url", "netloc", "simple_url", "pypi_url", "file_storage_domain"]
+
+    def __init__(self, url: str, file_storage_domain: str) -> None:
+        super().__init__()
+        self.url = url
+        self.netloc = urllib.parse.urlsplit(url).netloc
+        self.simple_url = self._url_for_path("simple")
+        self.pypi_url = self._url_for_path("pypi")
+
+        # This is part of a temporary hack used to block installs of PyPI
+        # packages which depend on external urls only necessary until PyPI can
+        # block such packages themselves
+        self.file_storage_domain = file_storage_domain
+
+    def _url_for_path(self, path: str) -> str:
+        return urllib.parse.urljoin(self.url, path)
+
+
+PyPI = PackageIndex("https://pypi.org/", file_storage_domain="files.pythonhosted.org")
+TestPyPI = PackageIndex(
+    "https://test.pypi.org/", file_storage_domain="test-files.pythonhosted.org"
+)

galaxy/lib/python3.12/site-packages/pip/_internal/models/installation_report.py

@@ -0,0 +1,56 @@
+from typing import Any, Dict, Sequence
+
+from pip._vendor.packaging.markers import default_environment
+
+from pip import __version__
+from pip._internal.req.req_install import InstallRequirement
+
+
+class InstallationReport:
+    def __init__(self, install_requirements: Sequence[InstallRequirement]):
+        self._install_requirements = install_requirements
+
+    @classmethod
+    def _install_req_to_dict(cls, ireq: InstallRequirement) -> Dict[str, Any]:
+        assert ireq.download_info, f"No download_info for {ireq}"
+        res = {
+            # PEP 610 json for the download URL. download_info.archive_info.hashes may
+            # be absent when the requirement was installed from the wheel cache
+            # and the cache entry was populated by an older pip version that did not
+            # record origin.json.
+            "download_info": ireq.download_info.to_dict(),
+            # is_direct is true if the requirement was a direct URL reference (which
+            # includes editable requirements), and false if the requirement was
+            # downloaded from a PEP 503 index or --find-links.
+            "is_direct": ireq.is_direct,
+            # is_yanked is true if the requirement was yanked from the index, but
+            # was still selected by pip to conform to PEP 592.
+            "is_yanked": ireq.link.is_yanked if ireq.link else False,
+            # requested is true if the requirement was specified by the user (aka
+            # top level requirement), and false if it was installed as a dependency of a
+            # requirement. https://peps.python.org/pep-0376/#requested
+            "requested": ireq.user_supplied,
+            # PEP 566 json encoding for metadata
+            # https://www.python.org/dev/peps/pep-0566/#json-compatible-metadata
+            "metadata": ireq.get_dist().metadata_dict,
+        }
+        if ireq.user_supplied and ireq.extras:
+            # For top level requirements, the list of requested extras, if any.
+            res["requested_extras"] = sorted(ireq.extras)
+        return res
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "version": "1",
+            "pip_version": __version__,
+            "install": [
+                self._install_req_to_dict(ireq) for ireq in self._install_requirements
+            ],
+            # https://peps.python.org/pep-0508/#environment-markers
+            # TODO: currently, the resolver uses the default environment to evaluate
+            # environment markers, so that is what we report here. In the future, it
+            # should also take into account options such as --python-version or
+            # --platform, perhaps under the form of an environment_override field?
+            # https://github.com/pypa/pip/issues/11198
+            "environment": default_environment(),
+        }

galaxy/lib/python3.12/site-packages/pip/_internal/models/link.py

@@ -0,0 +1,579 @@
+import functools
+import itertools
+import logging
+import os
+import posixpath
+import re
+import urllib.parse
+from dataclasses import dataclass
+from typing import (
+    TYPE_CHECKING,
+    Any,
+    Dict,
+    List,
+    Mapping,
+    NamedTuple,
+    Optional,
+    Tuple,
+    Union,
+)
+
+from pip._internal.utils.deprecation import deprecated
+from pip._internal.utils.filetypes import WHEEL_EXTENSION
+from pip._internal.utils.hashes import Hashes
+from pip._internal.utils.misc import (
+    pairwise,
+    redact_auth_from_url,
+    split_auth_from_netloc,
+    splitext,
+)
+from pip._internal.utils.models import KeyBasedCompareMixin
+from pip._internal.utils.urls import path_to_url, url_to_path
+
+if TYPE_CHECKING:
+    from pip._internal.index.collector import IndexContent
+
+logger = logging.getLogger(__name__)
+
+
+# Order matters, earlier hashes have a precedence over later hashes for what
+# we will pick to use.
+_SUPPORTED_HASHES = ("sha512", "sha384", "sha256", "sha224", "sha1", "md5")
+
+
+@dataclass(frozen=True)
+class LinkHash:
+    """Links to content may have embedded hash values. This class parses those.
+
+    `name` must be any member of `_SUPPORTED_HASHES`.
+
+    This class can be converted to and from `ArchiveInfo`. While ArchiveInfo intends to
+    be JSON-serializable to conform to PEP 610, this class contains the logic for
+    parsing a hash name and value for correctness, and then checking whether that hash
+    conforms to a schema with `.is_hash_allowed()`."""
+
+    name: str
+    value: str
+
+    _hash_url_fragment_re = re.compile(
+        # NB: we do not validate that the second group (.*) is a valid hex
+        # digest. Instead, we simply keep that string in this class, and then check it
+        # against Hashes when hash-checking is needed. This is easier to debug than
+        # proactively discarding an invalid hex digest, as we handle incorrect hashes
+        # and malformed hashes in the same place.
+        r"[#&]({choices})=([^&]*)".format(
+            choices="|".join(re.escape(hash_name) for hash_name in _SUPPORTED_HASHES)
+        ),
+    )
+
+    def __post_init__(self) -> None:
+        assert self.name in _SUPPORTED_HASHES
+
+    @classmethod
+    @functools.lru_cache(maxsize=None)
+    def find_hash_url_fragment(cls, url: str) -> Optional["LinkHash"]:
+        """Search a string for a checksum algorithm name and encoded output value."""
+        match = cls._hash_url_fragment_re.search(url)
+        if match is None:
+            return None
+        name, value = match.groups()
+        return cls(name=name, value=value)
+
+    def as_dict(self) -> Dict[str, str]:
+        return {self.name: self.value}
+
+    def as_hashes(self) -> Hashes:
+        """Return a Hashes instance which checks only for the current hash."""
+        return Hashes({self.name: [self.value]})
+
+    def is_hash_allowed(self, hashes: Optional[Hashes]) -> bool:
+        """
+        Return True if the current hash is allowed by `hashes`.
+        """
+        if hashes is None:
+            return False
+        return hashes.is_hash_allowed(self.name, hex_digest=self.value)
+
+
+@dataclass(frozen=True)
+class MetadataFile:
+    """Information about a core metadata file associated with a distribution."""
+
+    hashes: Optional[Dict[str, str]]
+
+    def __post_init__(self) -> None:
+        if self.hashes is not None:
+            assert all(name in _SUPPORTED_HASHES for name in self.hashes)
+
+
+def supported_hashes(hashes: Optional[Dict[str, str]]) -> Optional[Dict[str, str]]:
+    # Remove any unsupported hash types from the mapping. If this leaves no
+    # supported hashes, return None
+    if hashes is None:
+        return None
+    hashes = {n: v for n, v in hashes.items() if n in _SUPPORTED_HASHES}
+    if not hashes:
+        return None
+    return hashes
+
+
+def _clean_url_path_part(part: str) -> str:
+    """
+    Clean a "part" of a URL path (i.e. after splitting on "@" characters).
+    """
+    # We unquote prior to quoting to make sure nothing is double quoted.
+    return urllib.parse.quote(urllib.parse.unquote(part))
+
+
+def _clean_file_url_path(part: str) -> str:
+    """
+    Clean the first part of a URL path that corresponds to a local
+    filesystem path (i.e. the first part after splitting on "@" characters).
+    """
+    # We unquote prior to quoting to make sure nothing is double quoted.
+    # Also, on Windows the path part might contain a drive letter which
+    # should not be quoted. On Linux where drive letters do not
+    # exist, the colon should be quoted. We rely on urllib.request
+    # to do the right thing here.
+    return urllib.request.pathname2url(urllib.request.url2pathname(part))
+
+
+# percent-encoded:                   /
+_reserved_chars_re = re.compile("(@|%2F)", re.IGNORECASE)
+
+
+def _clean_url_path(path: str, is_local_path: bool) -> str:
+    """
+    Clean the path portion of a URL.
+    """
+    if is_local_path:
+        clean_func = _clean_file_url_path
+    else:
+        clean_func = _clean_url_path_part
+
+    # Split on the reserved characters prior to cleaning so that
+    # revision strings in VCS URLs are properly preserved.
+    parts = _reserved_chars_re.split(path)
+
+    cleaned_parts = []
+    for to_clean, reserved in pairwise(itertools.chain(parts, [""])):
+        cleaned_parts.append(clean_func(to_clean))
+        # Normalize %xx escapes (e.g. %2f -> %2F)
+        cleaned_parts.append(reserved.upper())
+
+    return "".join(cleaned_parts)
+
+
+def _ensure_quoted_url(url: str) -> str:
+    """
+    Make sure a link is fully quoted.
+    For example, if ' ' occurs in the URL, it will be replaced with "%20",
+    and without double-quoting other characters.
+    """
+    # Split the URL into parts according to the general structure
+    # `scheme://netloc/path;parameters?query#fragment`.
+    result = urllib.parse.urlparse(url)
+    # If the netloc is empty, then the URL refers to a local filesystem path.
+    is_local_path = not result.netloc
+    path = _clean_url_path(result.path, is_local_path=is_local_path)
+    return urllib.parse.urlunparse(result._replace(path=path))
+
+
+class Link(KeyBasedCompareMixin):
+    """Represents a parsed link from a Package Index's simple URL"""
+
+    __slots__ = [
+        "_parsed_url",
+        "_url",
+        "_hashes",
+        "comes_from",
+        "requires_python",
+        "yanked_reason",
+        "metadata_file_data",
+        "cache_link_parsing",
+        "egg_fragment",
+    ]
+
+    def __init__(
+        self,
+        url: str,
+        comes_from: Optional[Union[str, "IndexContent"]] = None,
+        requires_python: Optional[str] = None,
+        yanked_reason: Optional[str] = None,
+        metadata_file_data: Optional[MetadataFile] = None,
+        cache_link_parsing: bool = True,
+        hashes: Optional[Mapping[str, str]] = None,
+    ) -> None:
+        """
+        :param url: url of the resource pointed to (href of the link)
+        :param comes_from: instance of IndexContent where the link was found,
+            or string.
+        :param requires_python: String containing the `Requires-Python`
+            metadata field, specified in PEP 345. This may be specified by
+            a data-requires-python attribute in the HTML link tag, as
+            described in PEP 503.
+        :param yanked_reason: the reason the file has been yanked, if the
+            file has been yanked, or None if the file hasn't been yanked.
+            This is the value of the "data-yanked" attribute, if present, in
+            a simple repository HTML link. If the file has been yanked but
+            no reason was provided, this should be the empty string. See
+            PEP 592 for more information and the specification.
+        :param metadata_file_data: the metadata attached to the file, or None if
+            no such metadata is provided. This argument, if not None, indicates
+            that a separate metadata file exists, and also optionally supplies
+            hashes for that file.
+        :param cache_link_parsing: A flag that is used elsewhere to determine
+            whether resources retrieved from this link should be cached. PyPI
+            URLs should generally have this set to False, for example.
+        :param hashes: A mapping of hash names to digests to allow us to
+            determine the validity of a download.
+        """
+
+        # The comes_from, requires_python, and metadata_file_data arguments are
+        # only used by classmethods of this class, and are not used in client
+        # code directly.
+
+        # url can be a UNC windows share
+        if url.startswith("\\\\"):
+            url = path_to_url(url)
+
+        self._parsed_url = urllib.parse.urlsplit(url)
+        # Store the url as a private attribute to prevent accidentally
+        # trying to set a new value.
+        self._url = url
+
+        link_hash = LinkHash.find_hash_url_fragment(url)
+        hashes_from_link = {} if link_hash is None else link_hash.as_dict()
+        if hashes is None:
+            self._hashes = hashes_from_link
+        else:
+            self._hashes = {**hashes, **hashes_from_link}
+
+        self.comes_from = comes_from
+        self.requires_python = requires_python if requires_python else None
+        self.yanked_reason = yanked_reason
+        self.metadata_file_data = metadata_file_data
+
+        super().__init__(key=url, defining_class=Link)
+
+        self.cache_link_parsing = cache_link_parsing
+        self.egg_fragment = self._egg_fragment()
+
+    @classmethod
+    def from_json(
+        cls,
+        file_data: Dict[str, Any],
+        page_url: str,
+    ) -> Optional["Link"]:
+        """
+        Convert an pypi json document from a simple repository page into a Link.
+        """
+        file_url = file_data.get("url")
+        if file_url is None:
+            return None
+
+        url = _ensure_quoted_url(urllib.parse.urljoin(page_url, file_url))
+        pyrequire = file_data.get("requires-python")
+        yanked_reason = file_data.get("yanked")
+        hashes = file_data.get("hashes", {})
+
+        # PEP 714: Indexes must use the name core-metadata, but
+        # clients should support the old name as a fallback for compatibility.
+        metadata_info = file_data.get("core-metadata")
+        if metadata_info is None:
+            metadata_info = file_data.get("dist-info-metadata")
+
+        # The metadata info value may be a boolean, or a dict of hashes.
+        if isinstance(metadata_info, dict):
+            # The file exists, and hashes have been supplied
+            metadata_file_data = MetadataFile(supported_hashes(metadata_info))
+        elif metadata_info:
+            # The file exists, but there are no hashes
+            metadata_file_data = MetadataFile(None)
+        else:
+            # False or not present: the file does not exist
+            metadata_file_data = None
+
+        # The Link.yanked_reason expects an empty string instead of a boolean.
+        if yanked_reason and not isinstance(yanked_reason, str):
+            yanked_reason = ""
+        # The Link.yanked_reason expects None instead of False.
+        elif not yanked_reason:
+            yanked_reason = None
+
+        return cls(
+            url,
+            comes_from=page_url,
+            requires_python=pyrequire,
+            yanked_reason=yanked_reason,
+            hashes=hashes,
+            metadata_file_data=metadata_file_data,
+        )
+
+    @classmethod
+    def from_element(
+        cls,
+        anchor_attribs: Dict[str, Optional[str]],
+        page_url: str,
+        base_url: str,
+    ) -> Optional["Link"]:
+        """
+        Convert an anchor element's attributes in a simple repository page to a Link.
+        """
+        href = anchor_attribs.get("href")
+        if not href:
+            return None
+
+        url = _ensure_quoted_url(urllib.parse.urljoin(base_url, href))
+        pyrequire = anchor_attribs.get("data-requires-python")
+        yanked_reason = anchor_attribs.get("data-yanked")
+
+        # PEP 714: Indexes must use the name data-core-metadata, but
+        # clients should support the old name as a fallback for compatibility.
+        metadata_info = anchor_attribs.get("data-core-metadata")
+        if metadata_info is None:
+            metadata_info = anchor_attribs.get("data-dist-info-metadata")
+        # The metadata info value may be the string "true", or a string of
+        # the form "hashname=hashval"
+        if metadata_info == "true":
+            # The file exists, but there are no hashes
+            metadata_file_data = MetadataFile(None)
+        elif metadata_info is None:
+            # The file does not exist
+            metadata_file_data = None
+        else:
+            # The file exists, and hashes have been supplied
+            hashname, sep, hashval = metadata_info.partition("=")
+            if sep == "=":
+                metadata_file_data = MetadataFile(supported_hashes({hashname: hashval}))
+            else:
+                # Error - data is wrong. Treat as no hashes supplied.
+                logger.debug(
+                    "Index returned invalid data-dist-info-metadata value: %s",
+                    metadata_info,
+                )
+                metadata_file_data = MetadataFile(None)
+
+        return cls(
+            url,
+            comes_from=page_url,
+            requires_python=pyrequire,
+            yanked_reason=yanked_reason,
+            metadata_file_data=metadata_file_data,
+        )
+
+    def __str__(self) -> str:
+        if self.requires_python:
+            rp = f" (requires-python:{self.requires_python})"
+        else:
+            rp = ""
+        if self.comes_from:
+            return f"{redact_auth_from_url(self._url)} (from {self.comes_from}){rp}"
+        else:
+            return redact_auth_from_url(str(self._url))
+
+    def __repr__(self) -> str:
+        return f"<Link {self}>"
+
+    @property
+    def url(self) -> str:
+        return self._url
+
+    @property
+    def filename(self) -> str:
+        path = self.path.rstrip("/")
+        name = posixpath.basename(path)
+        if not name:
+            # Make sure we don't leak auth information if the netloc
+            # includes a username and password.
+            netloc, user_pass = split_auth_from_netloc(self.netloc)
+            return netloc
+
+        name = urllib.parse.unquote(name)
+        assert name, f"URL {self._url!r} produced no filename"
+        return name
+
+    @property
+    def file_path(self) -> str:
+        return url_to_path(self.url)
+
+    @property
+    def scheme(self) -> str:
+        return self._parsed_url.scheme
+
+    @property
+    def netloc(self) -> str:
+        """
+        This can contain auth information.
+        """
+        return self._parsed_url.netloc
+
+    @property
+    def path(self) -> str:
+        return urllib.parse.unquote(self._parsed_url.path)
+
+    def splitext(self) -> Tuple[str, str]:
+        return splitext(posixpath.basename(self.path.rstrip("/")))
+
+    @property
+    def ext(self) -> str:
+        return self.splitext()[1]
+
+    @property
+    def url_without_fragment(self) -> str:
+        scheme, netloc, path, query, fragment = self._parsed_url
+        return urllib.parse.urlunsplit((scheme, netloc, path, query, ""))
+
+    _egg_fragment_re = re.compile(r"[#&]egg=([^&]*)")
+
+    # Per PEP 508.
+    _project_name_re = re.compile(
+        r"^([A-Z0-9]|[A-Z0-9][A-Z0-9._-]*[A-Z0-9])$", re.IGNORECASE
+    )
+
+    def _egg_fragment(self) -> Optional[str]:
+        match = self._egg_fragment_re.search(self._url)
+        if not match:
+            return None
+
+        # An egg fragment looks like a PEP 508 project name, along with
+        # an optional extras specifier. Anything else is invalid.
+        project_name = match.group(1)
+        if not self._project_name_re.match(project_name):
+            deprecated(
+                reason=f"{self} contains an egg fragment with a non-PEP 508 name",
+                replacement="to use the req @ url syntax, and remove the egg fragment",
+                gone_in="25.0",
+                issue=11617,
+            )
+
+        return project_name
+
+    _subdirectory_fragment_re = re.compile(r"[#&]subdirectory=([^&]*)")
+
+    @property
+    def subdirectory_fragment(self) -> Optional[str]:
+        match = self._subdirectory_fragment_re.search(self._url)
+        if not match:
+            return None
+        return match.group(1)
+
+    def metadata_link(self) -> Optional["Link"]:
+        """Return a link to the associated core metadata file (if any)."""
+        if self.metadata_file_data is None:
+            return None
+        metadata_url = f"{self.url_without_fragment}.metadata"
+        if self.metadata_file_data.hashes is None:
+            return Link(metadata_url)
+        return Link(metadata_url, hashes=self.metadata_file_data.hashes)
+
+    def as_hashes(self) -> Hashes:
+        return Hashes({k: [v] for k, v in self._hashes.items()})
+
+    @property
+    def hash(self) -> Optional[str]:
+        return next(iter(self._hashes.values()), None)
+
+    @property
+    def hash_name(self) -> Optional[str]:
+        return next(iter(self._hashes), None)
+
+    @property
+    def show_url(self) -> str:
+        return posixpath.basename(self._url.split("#", 1)[0].split("?", 1)[0])
+
+    @property
+    def is_file(self) -> bool:
+        return self.scheme == "file"
+
+    def is_existing_dir(self) -> bool:
+        return self.is_file and os.path.isdir(self.file_path)
+
+    @property
+    def is_wheel(self) -> bool:
+        return self.ext == WHEEL_EXTENSION
+
+    @property
+    def is_vcs(self) -> bool:
+        from pip._internal.vcs import vcs
+
+        return self.scheme in vcs.all_schemes
+
+    @property
+    def is_yanked(self) -> bool:
+        return self.yanked_reason is not None
+
+    @property
+    def has_hash(self) -> bool:
+        return bool(self._hashes)
+
+    def is_hash_allowed(self, hashes: Optional[Hashes]) -> bool:
+        """
+        Return True if the link has a hash and it is allowed by `hashes`.
+        """
+        if hashes is None:
+            return False
+        return any(hashes.is_hash_allowed(k, v) for k, v in self._hashes.items())
+
+
+class _CleanResult(NamedTuple):
+    """Convert link for equivalency check.
+
+    This is used in the resolver to check whether two URL-specified requirements
+    likely point to the same distribution and can be considered equivalent. This
+    equivalency logic avoids comparing URLs literally, which can be too strict
+    (e.g. "a=1&b=2" vs "b=2&a=1") and produce conflicts unexpecting to users.
+
+    Currently this does three things:
+
+    1. Drop the basic auth part. This is technically wrong since a server can
+       serve different content based on auth, but if it does that, it is even
+       impossible to guarantee two URLs without auth are equivalent, since
+       the user can input different auth information when prompted. So the
+       practical solution is to assume the auth doesn't affect the response.
+    2. Parse the query to avoid the ordering issue. Note that ordering under the
+       same key in the query are NOT cleaned; i.e. "a=1&a=2" and "a=2&a=1" are
+       still considered different.
+    3. Explicitly drop most of the fragment part, except ``subdirectory=`` and
+       hash values, since it should have no impact the downloaded content. Note
+       that this drops the "egg=" part historically used to denote the requested
+       project (and extras), which is wrong in the strictest sense, but too many
+       people are supplying it inconsistently to cause superfluous resolution
+       conflicts, so we choose to also ignore them.
+    """
+
+    parsed: urllib.parse.SplitResult
+    query: Dict[str, List[str]]
+    subdirectory: str
+    hashes: Dict[str, str]
+
+
+def _clean_link(link: Link) -> _CleanResult:
+    parsed = link._parsed_url
+    netloc = parsed.netloc.rsplit("@", 1)[-1]
+    # According to RFC 8089, an empty host in file: means localhost.
+    if parsed.scheme == "file" and not netloc:
+        netloc = "localhost"
+    fragment = urllib.parse.parse_qs(parsed.fragment)
+    if "egg" in fragment:
+        logger.debug("Ignoring egg= fragment in %s", link)
+    try:
+        # If there are multiple subdirectory values, use the first one.
+        # This matches the behavior of Link.subdirectory_fragment.
+        subdirectory = fragment["subdirectory"][0]
+    except (IndexError, KeyError):
+        subdirectory = ""
+    # If there are multiple hash values under the same algorithm, use the
+    # first one. This matches the behavior of Link.hash_value.
+    hashes = {k: fragment[k][0] for k in _SUPPORTED_HASHES if k in fragment}
+    return _CleanResult(
+        parsed=parsed._replace(netloc=netloc, query="", fragment=""),
+        query=urllib.parse.parse_qs(parsed.query),
+        subdirectory=subdirectory,
+        hashes=hashes,
+    )
+
+
+@functools.lru_cache(maxsize=None)
+def links_equivalent(link1: Link, link2: Link) -> bool:
+    return _clean_link(link1) == _clean_link(link2)

galaxy/lib/python3.12/site-packages/pip/_internal/models/scheme.py

@@ -0,0 +1,31 @@
+"""
+For types associated with installation schemes.
+
+For a general overview of available schemes and their context, see
+https://docs.python.org/3/install/index.html#alternate-installation.
+"""
+
+
+SCHEME_KEYS = ["platlib", "purelib", "headers", "scripts", "data"]
+
+
+class Scheme:
+    """A Scheme holds paths which are used as the base directories for
+    artifacts associated with a Python package.
+    """
+
+    __slots__ = SCHEME_KEYS
+
+    def __init__(
+        self,
+        platlib: str,
+        purelib: str,
+        headers: str,
+        scripts: str,
+        data: str,
+    ) -> None:
+        self.platlib = platlib
+        self.purelib = purelib
+        self.headers = headers
+        self.scripts = scripts
+        self.data = data

galaxy/lib/python3.12/site-packages/pip/_internal/models/search_scope.py

@@ -0,0 +1,132 @@
+import itertools
+import logging
+import os
+import posixpath
+import urllib.parse
+from typing import List
+
+from pip._vendor.packaging.utils import canonicalize_name
+
+from pip._internal.models.index import PyPI
+from pip._internal.utils.compat import has_tls
+from pip._internal.utils.misc import normalize_path, redact_auth_from_url
+
+logger = logging.getLogger(__name__)
+
+
+class SearchScope:
+
+    """
+    Encapsulates the locations that pip is configured to search.
+    """
+
+    __slots__ = ["find_links", "index_urls", "no_index"]
+
+    @classmethod
+    def create(
+        cls,
+        find_links: List[str],
+        index_urls: List[str],
+        no_index: bool,
+    ) -> "SearchScope":
+        """
+        Create a SearchScope object after normalizing the `find_links`.
+        """
+        # Build find_links. If an argument starts with ~, it may be
+        # a local file relative to a home directory. So try normalizing
+        # it and if it exists, use the normalized version.
+        # This is deliberately conservative - it might be fine just to
+        # blindly normalize anything starting with a ~...
+        built_find_links: List[str] = []
+        for link in find_links:
+            if link.startswith("~"):
+                new_link = normalize_path(link)
+                if os.path.exists(new_link):
+                    link = new_link
+            built_find_links.append(link)
+
+        # If we don't have TLS enabled, then WARN if anyplace we're looking
+        # relies on TLS.
+        if not has_tls():
+            for link in itertools.chain(index_urls, built_find_links):
+                parsed = urllib.parse.urlparse(link)
+                if parsed.scheme == "https":
+                    logger.warning(
+                        "pip is configured with locations that require "
+                        "TLS/SSL, however the ssl module in Python is not "
+                        "available."
+                    )
+                    break
+
+        return cls(
+            find_links=built_find_links,
+            index_urls=index_urls,
+            no_index=no_index,
+        )
+
+    def __init__(
+        self,
+        find_links: List[str],
+        index_urls: List[str],
+        no_index: bool,
+    ) -> None:
+        self.find_links = find_links
+        self.index_urls = index_urls
+        self.no_index = no_index
+
+    def get_formatted_locations(self) -> str:
+        lines = []
+        redacted_index_urls = []
+        if self.index_urls and self.index_urls != [PyPI.simple_url]:
+            for url in self.index_urls:
+                redacted_index_url = redact_auth_from_url(url)
+
+                # Parse the URL
+                purl = urllib.parse.urlsplit(redacted_index_url)
+
+                # URL is generally invalid if scheme and netloc is missing
+                # there are issues with Python and URL parsing, so this test
+                # is a bit crude. See bpo-20271, bpo-23505. Python doesn't
+                # always parse invalid URLs correctly - it should raise
+                # exceptions for malformed URLs
+                if not purl.scheme and not purl.netloc:
+                    logger.warning(
+                        'The index url "%s" seems invalid, please provide a scheme.',
+                        redacted_index_url,
+                    )
+
+                redacted_index_urls.append(redacted_index_url)
+
+            lines.append(
+                "Looking in indexes: {}".format(", ".join(redacted_index_urls))
+            )
+
+        if self.find_links:
+            lines.append(
+                "Looking in links: {}".format(
+                    ", ".join(redact_auth_from_url(url) for url in self.find_links)
+                )
+            )
+        return "\n".join(lines)
+
+    def get_index_urls_locations(self, project_name: str) -> List[str]:
+        """Returns the locations found via self.index_urls
+
+        Checks the url_name on the main (first in the list) index and
+        use this url_name to produce all locations
+        """
+
+        def mkurl_pypi_url(url: str) -> str:
+            loc = posixpath.join(
+                url, urllib.parse.quote(canonicalize_name(project_name))
+            )
+            # For maximum compatibility with easy_install, ensure the path
+            # ends in a trailing slash.  Although this isn't in the spec
+            # (and PyPI can handle it without the slash) some other index
+            # implementations might break if they relied on easy_install's
+            # behavior.
+            if not loc.endswith("/"):
+                loc = loc + "/"
+            return loc
+
+        return [mkurl_pypi_url(url) for url in self.index_urls]

galaxy/lib/python3.12/site-packages/pip/_internal/models/selection_prefs.py

@@ -0,0 +1,51 @@
+from typing import Optional
+
+from pip._internal.models.format_control import FormatControl
+
+
+class SelectionPreferences:
+    """
+    Encapsulates the candidate selection preferences for downloading
+    and installing files.
+    """
+
+    __slots__ = [
+        "allow_yanked",
+        "allow_all_prereleases",
+        "format_control",
+        "prefer_binary",
+        "ignore_requires_python",
+    ]
+
+    # Don't include an allow_yanked default value to make sure each call
+    # site considers whether yanked releases are allowed. This also causes
+    # that decision to be made explicit in the calling code, which helps
+    # people when reading the code.
+    def __init__(
+        self,
+        allow_yanked: bool,
+        allow_all_prereleases: bool = False,
+        format_control: Optional[FormatControl] = None,
+        prefer_binary: bool = False,
+        ignore_requires_python: Optional[bool] = None,
+    ) -> None:
+        """Create a SelectionPreferences object.
+
+        :param allow_yanked: Whether files marked as yanked (in the sense
+            of PEP 592) are permitted to be candidates for install.
+        :param format_control: A FormatControl object or None. Used to control
+            the selection of source packages / binary packages when consulting
+            the index and links.
+        :param prefer_binary: Whether to prefer an old, but valid, binary
+            dist over a new source dist.
+        :param ignore_requires_python: Whether to ignore incompatible
+            "Requires-Python" values in links. Defaults to False.
+        """
+        if ignore_requires_python is None:
+            ignore_requires_python = False
+
+        self.allow_yanked = allow_yanked
+        self.allow_all_prereleases = allow_all_prereleases
+        self.format_control = format_control
+        self.prefer_binary = prefer_binary
+        self.ignore_requires_python = ignore_requires_python

galaxy/lib/python3.12/site-packages/pip/_internal/models/target_python.py

@@ -0,0 +1,122 @@
+import sys
+from typing import List, Optional, Set, Tuple
+
+from pip._vendor.packaging.tags import Tag
+
+from pip._internal.utils.compatibility_tags import get_supported, version_info_to_nodot
+from pip._internal.utils.misc import normalize_version_info
+
+
+class TargetPython:
+
+    """
+    Encapsulates the properties of a Python interpreter one is targeting
+    for a package install, download, etc.
+    """
+
+    __slots__ = [
+        "_given_py_version_info",
+        "abis",
+        "implementation",
+        "platforms",
+        "py_version",
+        "py_version_info",
+        "_valid_tags",
+        "_valid_tags_set",
+    ]
+
+    def __init__(
+        self,
+        platforms: Optional[List[str]] = None,
+        py_version_info: Optional[Tuple[int, ...]] = None,
+        abis: Optional[List[str]] = None,
+        implementation: Optional[str] = None,
+    ) -> None:
+        """
+        :param platforms: A list of strings or None. If None, searches for
+            packages that are supported by the current system. Otherwise, will
+            find packages that can be built on the platforms passed in. These
+            packages will only be downloaded for distribution: they will
+            not be built locally.
+        :param py_version_info: An optional tuple of ints representing the
+            Python version information to use (e.g. `sys.version_info[:3]`).
+            This can have length 1, 2, or 3 when provided.
+        :param abis: A list of strings or None. This is passed to
+            compatibility_tags.py's get_supported() function as is.
+        :param implementation: A string or None. This is passed to
+            compatibility_tags.py's get_supported() function as is.
+        """
+        # Store the given py_version_info for when we call get_supported().
+        self._given_py_version_info = py_version_info
+
+        if py_version_info is None:
+            py_version_info = sys.version_info[:3]
+        else:
+            py_version_info = normalize_version_info(py_version_info)
+
+        py_version = ".".join(map(str, py_version_info[:2]))
+
+        self.abis = abis
+        self.implementation = implementation
+        self.platforms = platforms
+        self.py_version = py_version
+        self.py_version_info = py_version_info
+
+        # This is used to cache the return value of get_(un)sorted_tags.
+        self._valid_tags: Optional[List[Tag]] = None
+        self._valid_tags_set: Optional[Set[Tag]] = None
+
+    def format_given(self) -> str:
+        """
+        Format the given, non-None attributes for display.
+        """
+        display_version = None
+        if self._given_py_version_info is not None:
+            display_version = ".".join(
+                str(part) for part in self._given_py_version_info
+            )
+
+        key_values = [
+            ("platforms", self.platforms),
+            ("version_info", display_version),
+            ("abis", self.abis),
+            ("implementation", self.implementation),
+        ]
+        return " ".join(
+            f"{key}={value!r}" for key, value in key_values if value is not None
+        )
+
+    def get_sorted_tags(self) -> List[Tag]:
+        """
+        Return the supported PEP 425 tags to check wheel candidates against.
+
+        The tags are returned in order of preference (most preferred first).
+        """
+        if self._valid_tags is None:
+            # Pass versions=None if no py_version_info was given since
+            # versions=None uses special default logic.
+            py_version_info = self._given_py_version_info
+            if py_version_info is None:
+                version = None
+            else:
+                version = version_info_to_nodot(py_version_info)
+
+            tags = get_supported(
+                version=version,
+                platforms=self.platforms,
+                abis=self.abis,
+                impl=self.implementation,
+            )
+            self._valid_tags = tags
+
+        return self._valid_tags
+
+    def get_unsorted_tags(self) -> Set[Tag]:
+        """Exactly the same as get_sorted_tags, but returns a set.
+
+        This is important for performance.
+        """
+        if self._valid_tags_set is None:
+            self._valid_tags_set = set(self.get_sorted_tags())
+
+        return self._valid_tags_set

galaxy/lib/python3.12/site-packages/pip/_internal/models/wheel.py

@@ -0,0 +1,92 @@
+"""Represents a wheel file and provides access to the various parts of the
+name that have meaning.
+"""
+import re
+from typing import Dict, Iterable, List
+
+from pip._vendor.packaging.tags import Tag
+
+from pip._internal.exceptions import InvalidWheelFilename
+
+
+class Wheel:
+    """A wheel file"""
+
+    wheel_file_re = re.compile(
+        r"""^(?P<namever>(?P<name>[^\s-]+?)-(?P<ver>[^\s-]*?))
+        ((-(?P<build>\d[^-]*?))?-(?P<pyver>[^\s-]+?)-(?P<abi>[^\s-]+?)-(?P<plat>[^\s-]+?)
+        \.whl|\.dist-info)$""",
+        re.VERBOSE,
+    )
+
+    def __init__(self, filename: str) -> None:
+        """
+        :raises InvalidWheelFilename: when the filename is invalid for a wheel
+        """
+        wheel_info = self.wheel_file_re.match(filename)
+        if not wheel_info:
+            raise InvalidWheelFilename(f"{filename} is not a valid wheel filename.")
+        self.filename = filename
+        self.name = wheel_info.group("name").replace("_", "-")
+        # we'll assume "_" means "-" due to wheel naming scheme
+        # (https://github.com/pypa/pip/issues/1150)
+        self.version = wheel_info.group("ver").replace("_", "-")
+        self.build_tag = wheel_info.group("build")
+        self.pyversions = wheel_info.group("pyver").split(".")
+        self.abis = wheel_info.group("abi").split(".")
+        self.plats = wheel_info.group("plat").split(".")
+
+        # All the tag combinations from this file
+        self.file_tags = {
+            Tag(x, y, z) for x in self.pyversions for y in self.abis for z in self.plats
+        }
+
+    def get_formatted_file_tags(self) -> List[str]:
+        """Return the wheel's tags as a sorted list of strings."""
+        return sorted(str(tag) for tag in self.file_tags)
+
+    def support_index_min(self, tags: List[Tag]) -> int:
+        """Return the lowest index that one of the wheel's file_tag combinations
+        achieves in the given list of supported tags.
+
+        For example, if there are 8 supported tags and one of the file tags
+        is first in the list, then return 0.
+
+        :param tags: the PEP 425 tags to check the wheel against, in order
+            with most preferred first.
+
+        :raises ValueError: If none of the wheel's file tags match one of
+            the supported tags.
+        """
+        try:
+            return next(i for i, t in enumerate(tags) if t in self.file_tags)
+        except StopIteration:
+            raise ValueError()
+
+    def find_most_preferred_tag(
+        self, tags: List[Tag], tag_to_priority: Dict[Tag, int]
+    ) -> int:
+        """Return the priority of the most preferred tag that one of the wheel's file
+        tag combinations achieves in the given list of supported tags using the given
+        tag_to_priority mapping, where lower priorities are more-preferred.
+
+        This is used in place of support_index_min in some cases in order to avoid
+        an expensive linear scan of a large list of tags.
+
+        :param tags: the PEP 425 tags to check the wheel against.
+        :param tag_to_priority: a mapping from tag to priority of that tag, where
+            lower is more preferred.
+
+        :raises ValueError: If none of the wheel's file tags match one of
+            the supported tags.
+        """
+        return min(
+            tag_to_priority[tag] for tag in self.file_tags if tag in tag_to_priority
+        )
+
+    def supported(self, tags: Iterable[Tag]) -> bool:
+        """Return whether the wheel is compatible with one of the given tags.
+
+        :param tags: the PEP 425 tags to check the wheel against.
+        """
+        return not self.file_tags.isdisjoint(tags)

galaxy/lib/python3.12/site-packages/pip/_internal/network/__init__.py

@@ -0,0 +1,2 @@
+"""Contains purely network-related utilities.
+"""

galaxy/lib/python3.12/site-packages/pip/_internal/network/auth.py

@@ -0,0 +1,561 @@
+"""Network Authentication Helpers
+
+Contains interface (MultiDomainBasicAuth) and associated glue code for
+providing credentials in the context of network requests.
+"""
+import logging
+import os
+import shutil
+import subprocess
+import sysconfig
+import typing
+import urllib.parse
+from abc import ABC, abstractmethod
+from functools import lru_cache
+from os.path import commonprefix
+from pathlib import Path
+from typing import Any, Dict, List, NamedTuple, Optional, Tuple
+
+from pip._vendor.requests.auth import AuthBase, HTTPBasicAuth
+from pip._vendor.requests.models import Request, Response
+from pip._vendor.requests.utils import get_netrc_auth
+
+from pip._internal.utils.logging import getLogger
+from pip._internal.utils.misc import (
+    ask,
+    ask_input,
+    ask_password,
+    remove_auth_from_url,
+    split_auth_netloc_from_url,
+)
+from pip._internal.vcs.versioncontrol import AuthInfo
+
+logger = getLogger(__name__)
+
+KEYRING_DISABLED = False
+
+
+class Credentials(NamedTuple):
+    url: str
+    username: str
+    password: str
+
+
+class KeyRingBaseProvider(ABC):
+    """Keyring base provider interface"""
+
+    has_keyring: bool
+
+    @abstractmethod
+    def get_auth_info(self, url: str, username: Optional[str]) -> Optional[AuthInfo]:
+        ...
+
+    @abstractmethod
+    def save_auth_info(self, url: str, username: str, password: str) -> None:
+        ...
+
+
+class KeyRingNullProvider(KeyRingBaseProvider):
+    """Keyring null provider"""
+
+    has_keyring = False
+
+    def get_auth_info(self, url: str, username: Optional[str]) -> Optional[AuthInfo]:
+        return None
+
+    def save_auth_info(self, url: str, username: str, password: str) -> None:
+        return None
+
+
+class KeyRingPythonProvider(KeyRingBaseProvider):
+    """Keyring interface which uses locally imported `keyring`"""
+
+    has_keyring = True
+
+    def __init__(self) -> None:
+        import keyring
+
+        self.keyring = keyring
+
+    def get_auth_info(self, url: str, username: Optional[str]) -> Optional[AuthInfo]:
+        # Support keyring's get_credential interface which supports getting
+        # credentials without a username. This is only available for
+        # keyring>=15.2.0.
+        if hasattr(self.keyring, "get_credential"):
+            logger.debug("Getting credentials from keyring for %s", url)
+            cred = self.keyring.get_credential(url, username)
+            if cred is not None:
+                return cred.username, cred.password
+            return None
+
+        if username is not None:
+            logger.debug("Getting password from keyring for %s", url)
+            password = self.keyring.get_password(url, username)
+            if password:
+                return username, password
+        return None
+
+    def save_auth_info(self, url: str, username: str, password: str) -> None:
+        self.keyring.set_password(url, username, password)
+
+
+class KeyRingCliProvider(KeyRingBaseProvider):
+    """Provider which uses `keyring` cli
+
+    Instead of calling the keyring package installed alongside pip
+    we call keyring on the command line which will enable pip to
+    use which ever installation of keyring is available first in
+    PATH.
+    """
+
+    has_keyring = True
+
+    def __init__(self, cmd: str) -> None:
+        self.keyring = cmd
+
+    def get_auth_info(self, url: str, username: Optional[str]) -> Optional[AuthInfo]:
+        # This is the default implementation of keyring.get_credential
+        # https://github.com/jaraco/keyring/blob/97689324abcf01bd1793d49063e7ca01e03d7d07/keyring/backend.py#L134-L139
+        if username is not None:
+            password = self._get_password(url, username)
+            if password is not None:
+                return username, password
+        return None
+
+    def save_auth_info(self, url: str, username: str, password: str) -> None:
+        return self._set_password(url, username, password)
+
+    def _get_password(self, service_name: str, username: str) -> Optional[str]:
+        """Mirror the implementation of keyring.get_password using cli"""
+        if self.keyring is None:
+            return None
+
+        cmd = [self.keyring, "get", service_name, username]
+        env = os.environ.copy()
+        env["PYTHONIOENCODING"] = "utf-8"
+        res = subprocess.run(
+            cmd,
+            stdin=subprocess.DEVNULL,
+            stdout=subprocess.PIPE,
+            env=env,
+        )
+        if res.returncode:
+            return None
+        return res.stdout.decode("utf-8").strip(os.linesep)
+
+    def _set_password(self, service_name: str, username: str, password: str) -> None:
+        """Mirror the implementation of keyring.set_password using cli"""
+        if self.keyring is None:
+            return None
+        env = os.environ.copy()
+        env["PYTHONIOENCODING"] = "utf-8"
+        subprocess.run(
+            [self.keyring, "set", service_name, username],
+            input=f"{password}{os.linesep}".encode("utf-8"),
+            env=env,
+            check=True,
+        )
+        return None
+
+
+@lru_cache(maxsize=None)
+def get_keyring_provider(provider: str) -> KeyRingBaseProvider:
+    logger.verbose("Keyring provider requested: %s", provider)
+
+    # keyring has previously failed and been disabled
+    if KEYRING_DISABLED:
+        provider = "disabled"
+    if provider in ["import", "auto"]:
+        try:
+            impl = KeyRingPythonProvider()
+            logger.verbose("Keyring provider set: import")
+            return impl
+        except ImportError:
+            pass
+        except Exception as exc:
+            # In the event of an unexpected exception
+            # we should warn the user
+            msg = "Installed copy of keyring fails with exception %s"
+            if provider == "auto":
+                msg = msg + ", trying to find a keyring executable as a fallback"
+            logger.warning(msg, exc, exc_info=logger.isEnabledFor(logging.DEBUG))
+    if provider in ["subprocess", "auto"]:
+        cli = shutil.which("keyring")
+        if cli and cli.startswith(sysconfig.get_path("scripts")):
+            # all code within this function is stolen from shutil.which implementation
+            @typing.no_type_check
+            def PATH_as_shutil_which_determines_it() -> str:
+                path = os.environ.get("PATH", None)
+                if path is None:
+                    try:
+                        path = os.confstr("CS_PATH")
+                    except (AttributeError, ValueError):
+                        # os.confstr() or CS_PATH is not available
+                        path = os.defpath
+                # bpo-35755: Don't use os.defpath if the PATH environment variable is
+                # set to an empty string
+
+                return path
+
+            scripts = Path(sysconfig.get_path("scripts"))
+
+            paths = []
+            for path in PATH_as_shutil_which_determines_it().split(os.pathsep):
+                p = Path(path)
+                try:
+                    if not p.samefile(scripts):
+                        paths.append(path)
+                except FileNotFoundError:
+                    pass
+
+            path = os.pathsep.join(paths)
+
+            cli = shutil.which("keyring", path=path)
+
+        if cli:
+            logger.verbose("Keyring provider set: subprocess with executable %s", cli)
+            return KeyRingCliProvider(cli)
+
+    logger.verbose("Keyring provider set: disabled")
+    return KeyRingNullProvider()
+
+
+class MultiDomainBasicAuth(AuthBase):
+    def __init__(
+        self,
+        prompting: bool = True,
+        index_urls: Optional[List[str]] = None,
+        keyring_provider: str = "auto",
+    ) -> None:
+        self.prompting = prompting
+        self.index_urls = index_urls
+        self.keyring_provider = keyring_provider  # type: ignore[assignment]
+        self.passwords: Dict[str, AuthInfo] = {}
+        # When the user is prompted to enter credentials and keyring is
+        # available, we will offer to save them. If the user accepts,
+        # this value is set to the credentials they entered. After the
+        # request authenticates, the caller should call
+        # ``save_credentials`` to save these.
+        self._credentials_to_save: Optional[Credentials] = None
+
+    @property
+    def keyring_provider(self) -> KeyRingBaseProvider:
+        return get_keyring_provider(self._keyring_provider)
+
+    @keyring_provider.setter
+    def keyring_provider(self, provider: str) -> None:
+        # The free function get_keyring_provider has been decorated with
+        # functools.cache. If an exception occurs in get_keyring_auth that
+        # cache will be cleared and keyring disabled, take that into account
+        # if you want to remove this indirection.
+        self._keyring_provider = provider
+
+    @property
+    def use_keyring(self) -> bool:
+        # We won't use keyring when --no-input is passed unless
+        # a specific provider is requested because it might require
+        # user interaction
+        return self.prompting or self._keyring_provider not in ["auto", "disabled"]
+
+    def _get_keyring_auth(
+        self,
+        url: Optional[str],
+        username: Optional[str],
+    ) -> Optional[AuthInfo]:
+        """Return the tuple auth for a given url from keyring."""
+        # Do nothing if no url was provided
+        if not url:
+            return None
+
+        try:
+            return self.keyring_provider.get_auth_info(url, username)
+        except Exception as exc:
+            logger.warning(
+                "Keyring is skipped due to an exception: %s",
+                str(exc),
+            )
+            global KEYRING_DISABLED
+            KEYRING_DISABLED = True
+            get_keyring_provider.cache_clear()
+            return None
+
+    def _get_index_url(self, url: str) -> Optional[str]:
+        """Return the original index URL matching the requested URL.
+
+        Cached or dynamically generated credentials may work against
+        the original index URL rather than just the netloc.
+
+        The provided url should have had its username and password
+        removed already. If the original index url had credentials then
+        they will be included in the return value.
+
+        Returns None if no matching index was found, or if --no-index
+        was specified by the user.
+        """
+        if not url or not self.index_urls:
+            return None
+
+        url = remove_auth_from_url(url).rstrip("/") + "/"
+        parsed_url = urllib.parse.urlsplit(url)
+
+        candidates = []
+
+        for index in self.index_urls:
+            index = index.rstrip("/") + "/"
+            parsed_index = urllib.parse.urlsplit(remove_auth_from_url(index))
+            if parsed_url == parsed_index:
+                return index
+
+            if parsed_url.netloc != parsed_index.netloc:
+                continue
+
+            candidate = urllib.parse.urlsplit(index)
+            candidates.append(candidate)
+
+        if not candidates:
+            return None
+
+        candidates.sort(
+            reverse=True,
+            key=lambda candidate: commonprefix(
+                [
+                    parsed_url.path,
+                    candidate.path,
+                ]
+            ).rfind("/"),
+        )
+
+        return urllib.parse.urlunsplit(candidates[0])
+
+    def _get_new_credentials(
+        self,
+        original_url: str,
+        *,
+        allow_netrc: bool = True,
+        allow_keyring: bool = False,
+    ) -> AuthInfo:
+        """Find and return credentials for the specified URL."""
+        # Split the credentials and netloc from the url.
+        url, netloc, url_user_password = split_auth_netloc_from_url(
+            original_url,
+        )
+
+        # Start with the credentials embedded in the url
+        username, password = url_user_password
+        if username is not None and password is not None:
+            logger.debug("Found credentials in url for %s", netloc)
+            return url_user_password
+
+        # Find a matching index url for this request
+        index_url = self._get_index_url(url)
+        if index_url:
+            # Split the credentials from the url.
+            index_info = split_auth_netloc_from_url(index_url)
+            if index_info:
+                index_url, _, index_url_user_password = index_info
+                logger.debug("Found index url %s", index_url)
+
+        # If an index URL was found, try its embedded credentials
+        if index_url and index_url_user_password[0] is not None:
+            username, password = index_url_user_password
+            if username is not None and password is not None:
+                logger.debug("Found credentials in index url for %s", netloc)
+                return index_url_user_password
+
+        # Get creds from netrc if we still don't have them
+        if allow_netrc:
+            netrc_auth = get_netrc_auth(original_url)
+            if netrc_auth:
+                logger.debug("Found credentials in netrc for %s", netloc)
+                return netrc_auth
+
+        # If we don't have a password and keyring is available, use it.
+        if allow_keyring:
+            # The index url is more specific than the netloc, so try it first
+            # fmt: off
+            kr_auth = (
+                self._get_keyring_auth(index_url, username) or
+                self._get_keyring_auth(netloc, username)
+            )
+            # fmt: on
+            if kr_auth:
+                logger.debug("Found credentials in keyring for %s", netloc)
+                return kr_auth
+
+        return username, password
+
+    def _get_url_and_credentials(
+        self, original_url: str
+    ) -> Tuple[str, Optional[str], Optional[str]]:
+        """Return the credentials to use for the provided URL.
+
+        If allowed, netrc and keyring may be used to obtain the
+        correct credentials.
+
+        Returns (url_without_credentials, username, password). Note
+        that even if the original URL contains credentials, this
+        function may return a different username and password.
+        """
+        url, netloc, _ = split_auth_netloc_from_url(original_url)
+
+        # Try to get credentials from original url
+        username, password = self._get_new_credentials(original_url)
+
+        # If credentials not found, use any stored credentials for this netloc.
+        # Do this if either the username or the password is missing.
+        # This accounts for the situation in which the user has specified
+        # the username in the index url, but the password comes from keyring.
+        if (username is None or password is None) and netloc in self.passwords:
+            un, pw = self.passwords[netloc]
+            # It is possible that the cached credentials are for a different username,
+            # in which case the cache should be ignored.
+            if username is None or username == un:
+                username, password = un, pw
+
+        if username is not None or password is not None:
+            # Convert the username and password if they're None, so that
+            # this netloc will show up as "cached" in the conditional above.
+            # Further, HTTPBasicAuth doesn't accept None, so it makes sense to
+            # cache the value that is going to be used.
+            username = username or ""
+            password = password or ""
+
+            # Store any acquired credentials.
+            self.passwords[netloc] = (username, password)
+
+        assert (
+            # Credentials were found
+            (username is not None and password is not None)
+            # Credentials were not found
+            or (username is None and password is None)
+        ), f"Could not load credentials from url: {original_url}"
+
+        return url, username, password
+
+    def __call__(self, req: Request) -> Request:
+        # Get credentials for this request
+        url, username, password = self._get_url_and_credentials(req.url)
+
+        # Set the url of the request to the url without any credentials
+        req.url = url
+
+        if username is not None and password is not None:
+            # Send the basic auth with this request
+            req = HTTPBasicAuth(username, password)(req)
+
+        # Attach a hook to handle 401 responses
+        req.register_hook("response", self.handle_401)
+
+        return req
+
+    # Factored out to allow for easy patching in tests
+    def _prompt_for_password(
+        self, netloc: str
+    ) -> Tuple[Optional[str], Optional[str], bool]:
+        username = ask_input(f"User for {netloc}: ") if self.prompting else None
+        if not username:
+            return None, None, False
+        if self.use_keyring:
+            auth = self._get_keyring_auth(netloc, username)
+            if auth and auth[0] is not None and auth[1] is not None:
+                return auth[0], auth[1], False
+        password = ask_password("Password: ")
+        return username, password, True
+
+    # Factored out to allow for easy patching in tests
+    def _should_save_password_to_keyring(self) -> bool:
+        if (
+            not self.prompting
+            or not self.use_keyring
+            or not self.keyring_provider.has_keyring
+        ):
+            return False
+        return ask("Save credentials to keyring [y/N]: ", ["y", "n"]) == "y"
+
+    def handle_401(self, resp: Response, **kwargs: Any) -> Response:
+        # We only care about 401 responses, anything else we want to just
+        #   pass through the actual response
+        if resp.status_code != 401:
+            return resp
+
+        username, password = None, None
+
+        # Query the keyring for credentials:
+        if self.use_keyring:
+            username, password = self._get_new_credentials(
+                resp.url,
+                allow_netrc=False,
+                allow_keyring=True,
+            )
+
+        # We are not able to prompt the user so simply return the response
+        if not self.prompting and not username and not password:
+            return resp
+
+        parsed = urllib.parse.urlparse(resp.url)
+
+        # Prompt the user for a new username and password
+        save = False
+        if not username and not password:
+            username, password, save = self._prompt_for_password(parsed.netloc)
+
+        # Store the new username and password to use for future requests
+        self._credentials_to_save = None
+        if username is not None and password is not None:
+            self.passwords[parsed.netloc] = (username, password)
+
+            # Prompt to save the password to keyring
+            if save and self._should_save_password_to_keyring():
+                self._credentials_to_save = Credentials(
+                    url=parsed.netloc,
+                    username=username,
+                    password=password,
+                )
+
+        # Consume content and release the original connection to allow our new
+        #   request to reuse the same one.
+        # The result of the assignment isn't used, it's just needed to consume
+        # the content.
+        _ = resp.content
+        resp.raw.release_conn()
+
+        # Add our new username and password to the request
+        req = HTTPBasicAuth(username or "", password or "")(resp.request)
+        req.register_hook("response", self.warn_on_401)
+
+        # On successful request, save the credentials that were used to
+        # keyring. (Note that if the user responded "no" above, this member
+        # is not set and nothing will be saved.)
+        if self._credentials_to_save:
+            req.register_hook("response", self.save_credentials)
+
+        # Send our new request
+        new_resp = resp.connection.send(req, **kwargs)
+        new_resp.history.append(resp)
+
+        return new_resp
+
+    def warn_on_401(self, resp: Response, **kwargs: Any) -> None:
+        """Response callback to warn about incorrect credentials."""
+        if resp.status_code == 401:
+            logger.warning(
+                "401 Error, Credentials not correct for %s",
+                resp.request.url,
+            )
+
+    def save_credentials(self, resp: Response, **kwargs: Any) -> None:
+        """Response callback to save credentials on success."""
+        assert (
+            self.keyring_provider.has_keyring
+        ), "should never reach here without keyring"
+
+        creds = self._credentials_to_save
+        self._credentials_to_save = None
+        if creds and resp.status_code < 400:
+            try:
+                logger.info("Saving credentials to keyring")
+                self.keyring_provider.save_auth_info(
+                    creds.url, creds.username, creds.password
+                )
+            except Exception:
+                logger.exception("Failed to save credentials")

galaxy/lib/python3.12/site-packages/pip/_internal/network/cache.py

@@ -0,0 +1,106 @@
+"""HTTP cache implementation.
+"""
+
+import os
+from contextlib import contextmanager
+from datetime import datetime
+from typing import BinaryIO, Generator, Optional, Union
+
+from pip._vendor.cachecontrol.cache import SeparateBodyBaseCache
+from pip._vendor.cachecontrol.caches import SeparateBodyFileCache
+from pip._vendor.requests.models import Response
+
+from pip._internal.utils.filesystem import adjacent_tmp_file, replace
+from pip._internal.utils.misc import ensure_dir
+
+
+def is_from_cache(response: Response) -> bool:
+    return getattr(response, "from_cache", False)
+
+
+@contextmanager
+def suppressed_cache_errors() -> Generator[None, None, None]:
+    """If we can't access the cache then we can just skip caching and process
+    requests as if caching wasn't enabled.
+    """
+    try:
+        yield
+    except OSError:
+        pass
+
+
+class SafeFileCache(SeparateBodyBaseCache):
+    """
+    A file based cache which is safe to use even when the target directory may
+    not be accessible or writable.
+
+    There is a race condition when two processes try to write and/or read the
+    same entry at the same time, since each entry consists of two separate
+    files (https://github.com/psf/cachecontrol/issues/324).  We therefore have
+    additional logic that makes sure that both files to be present before
+    returning an entry; this fixes the read side of the race condition.
+
+    For the write side, we assume that the server will only ever return the
+    same data for the same URL, which ought to be the case for files pip is
+    downloading.  PyPI does not have a mechanism to swap out a wheel for
+    another wheel, for example.  If this assumption is not true, the
+    CacheControl issue will need to be fixed.
+    """
+
+    def __init__(self, directory: str) -> None:
+        assert directory is not None, "Cache directory must not be None."
+        super().__init__()
+        self.directory = directory
+
+    def _get_cache_path(self, name: str) -> str:
+        # From cachecontrol.caches.file_cache.FileCache._fn, brought into our
+        # class for backwards-compatibility and to avoid using a non-public
+        # method.
+        hashed = SeparateBodyFileCache.encode(name)
+        parts = list(hashed[:5]) + [hashed]
+        return os.path.join(self.directory, *parts)
+
+    def get(self, key: str) -> Optional[bytes]:
+        # The cache entry is only valid if both metadata and body exist.
+        metadata_path = self._get_cache_path(key)
+        body_path = metadata_path + ".body"
+        if not (os.path.exists(metadata_path) and os.path.exists(body_path)):
+            return None
+        with suppressed_cache_errors():
+            with open(metadata_path, "rb") as f:
+                return f.read()
+
+    def _write(self, path: str, data: bytes) -> None:
+        with suppressed_cache_errors():
+            ensure_dir(os.path.dirname(path))
+
+            with adjacent_tmp_file(path) as f:
+                f.write(data)
+
+            replace(f.name, path)
+
+    def set(
+        self, key: str, value: bytes, expires: Union[int, datetime, None] = None
+    ) -> None:
+        path = self._get_cache_path(key)
+        self._write(path, value)
+
+    def delete(self, key: str) -> None:
+        path = self._get_cache_path(key)
+        with suppressed_cache_errors():
+            os.remove(path)
+        with suppressed_cache_errors():
+            os.remove(path + ".body")
+
+    def get_body(self, key: str) -> Optional[BinaryIO]:
+        # The cache entry is only valid if both metadata and body exist.
+        metadata_path = self._get_cache_path(key)
+        body_path = metadata_path + ".body"
+        if not (os.path.exists(metadata_path) and os.path.exists(body_path)):
+            return None
+        with suppressed_cache_errors():
+            return open(body_path, "rb")
+
+    def set_body(self, key: str, body: bytes) -> None:
+        path = self._get_cache_path(key) + ".body"
+        self._write(path, body)

galaxy/lib/python3.12/site-packages/pip/_internal/network/download.py

@@ -0,0 +1,186 @@
+"""Download files with progress indicators.
+"""
+import email.message
+import logging
+import mimetypes
+import os
+from typing import Iterable, Optional, Tuple
+
+from pip._vendor.requests.models import CONTENT_CHUNK_SIZE, Response
+
+from pip._internal.cli.progress_bars import get_download_progress_renderer
+from pip._internal.exceptions import NetworkConnectionError
+from pip._internal.models.index import PyPI
+from pip._internal.models.link import Link
+from pip._internal.network.cache import is_from_cache
+from pip._internal.network.session import PipSession
+from pip._internal.network.utils import HEADERS, raise_for_status, response_chunks
+from pip._internal.utils.misc import format_size, redact_auth_from_url, splitext
+
+logger = logging.getLogger(__name__)
+
+
+def _get_http_response_size(resp: Response) -> Optional[int]:
+    try:
+        return int(resp.headers["content-length"])
+    except (ValueError, KeyError, TypeError):
+        return None
+
+
+def _prepare_download(
+    resp: Response,
+    link: Link,
+    progress_bar: str,
+) -> Iterable[bytes]:
+    total_length = _get_http_response_size(resp)
+
+    if link.netloc == PyPI.file_storage_domain:
+        url = link.show_url
+    else:
+        url = link.url_without_fragment
+
+    logged_url = redact_auth_from_url(url)
+
+    if total_length:
+        logged_url = f"{logged_url} ({format_size(total_length)})"
+
+    if is_from_cache(resp):
+        logger.info("Using cached %s", logged_url)
+    else:
+        logger.info("Downloading %s", logged_url)
+
+    if logger.getEffectiveLevel() > logging.INFO:
+        show_progress = False
+    elif is_from_cache(resp):
+        show_progress = False
+    elif not total_length:
+        show_progress = True
+    elif total_length > (40 * 1000):
+        show_progress = True
+    else:
+        show_progress = False
+
+    chunks = response_chunks(resp, CONTENT_CHUNK_SIZE)
+
+    if not show_progress:
+        return chunks
+
+    renderer = get_download_progress_renderer(bar_type=progress_bar, size=total_length)
+    return renderer(chunks)
+
+
+def sanitize_content_filename(filename: str) -> str:
+    """
+    Sanitize the "filename" value from a Content-Disposition header.
+    """
+    return os.path.basename(filename)
+
+
+def parse_content_disposition(content_disposition: str, default_filename: str) -> str:
+    """
+    Parse the "filename" value from a Content-Disposition header, and
+    return the default filename if the result is empty.
+    """
+    m = email.message.Message()
+    m["content-type"] = content_disposition
+    filename = m.get_param("filename")
+    if filename:
+        # We need to sanitize the filename to prevent directory traversal
+        # in case the filename contains ".." path parts.
+        filename = sanitize_content_filename(str(filename))
+    return filename or default_filename
+
+
+def _get_http_response_filename(resp: Response, link: Link) -> str:
+    """Get an ideal filename from the given HTTP response, falling back to
+    the link filename if not provided.
+    """
+    filename = link.filename  # fallback
+    # Have a look at the Content-Disposition header for a better guess
+    content_disposition = resp.headers.get("content-disposition")
+    if content_disposition:
+        filename = parse_content_disposition(content_disposition, filename)
+    ext: Optional[str] = splitext(filename)[1]
+    if not ext:
+        ext = mimetypes.guess_extension(resp.headers.get("content-type", ""))
+        if ext:
+            filename += ext
+    if not ext and link.url != resp.url:
+        ext = os.path.splitext(resp.url)[1]
+        if ext:
+            filename += ext
+    return filename
+
+
+def _http_get_download(session: PipSession, link: Link) -> Response:
+    target_url = link.url.split("#", 1)[0]
+    resp = session.get(target_url, headers=HEADERS, stream=True)
+    raise_for_status(resp)
+    return resp
+
+
+class Downloader:
+    def __init__(
+        self,
+        session: PipSession,
+        progress_bar: str,
+    ) -> None:
+        self._session = session
+        self._progress_bar = progress_bar
+
+    def __call__(self, link: Link, location: str) -> Tuple[str, str]:
+        """Download the file given by link into location."""
+        try:
+            resp = _http_get_download(self._session, link)
+        except NetworkConnectionError as e:
+            assert e.response is not None
+            logger.critical(
+                "HTTP error %s while getting %s", e.response.status_code, link
+            )
+            raise
+
+        filename = _get_http_response_filename(resp, link)
+        filepath = os.path.join(location, filename)
+
+        chunks = _prepare_download(resp, link, self._progress_bar)
+        with open(filepath, "wb") as content_file:
+            for chunk in chunks:
+                content_file.write(chunk)
+        content_type = resp.headers.get("Content-Type", "")
+        return filepath, content_type
+
+
+class BatchDownloader:
+    def __init__(
+        self,
+        session: PipSession,
+        progress_bar: str,
+    ) -> None:
+        self._session = session
+        self._progress_bar = progress_bar
+
+    def __call__(
+        self, links: Iterable[Link], location: str
+    ) -> Iterable[Tuple[Link, Tuple[str, str]]]:
+        """Download the files given by links into location."""
+        for link in links:
+            try:
+                resp = _http_get_download(self._session, link)
+            except NetworkConnectionError as e:
+                assert e.response is not None
+                logger.critical(
+                    "HTTP error %s while getting %s",
+                    e.response.status_code,
+                    link,
+                )
+                raise
+
+            filename = _get_http_response_filename(resp, link)
+            filepath = os.path.join(location, filename)
+
+            chunks = _prepare_download(resp, link, self._progress_bar)
+            with open(filepath, "wb") as content_file:
+                for chunk in chunks:
+                    content_file.write(chunk)
+            content_type = resp.headers.get("Content-Type", "")
+            yield link, (filepath, content_type)

galaxy/lib/python3.12/site-packages/pip/_internal/network/lazy_wheel.py

@@ -0,0 +1,210 @@
+"""Lazy ZIP over HTTP"""
+
+__all__ = ["HTTPRangeRequestUnsupported", "dist_from_wheel_url"]
+
+from bisect import bisect_left, bisect_right
+from contextlib import contextmanager
+from tempfile import NamedTemporaryFile
+from typing import Any, Dict, Generator, List, Optional, Tuple
+from zipfile import BadZipFile, ZipFile
+
+from pip._vendor.packaging.utils import canonicalize_name
+from pip._vendor.requests.models import CONTENT_CHUNK_SIZE, Response
+
+from pip._internal.metadata import BaseDistribution, MemoryWheel, get_wheel_distribution
+from pip._internal.network.session import PipSession
+from pip._internal.network.utils import HEADERS, raise_for_status, response_chunks
+
+
+class HTTPRangeRequestUnsupported(Exception):
+    pass
+
+
+def dist_from_wheel_url(name: str, url: str, session: PipSession) -> BaseDistribution:
+    """Return a distribution object from the given wheel URL.
+
+    This uses HTTP range requests to only fetch the portion of the wheel
+    containing metadata, just enough for the object to be constructed.
+    If such requests are not supported, HTTPRangeRequestUnsupported
+    is raised.
+    """
+    with LazyZipOverHTTP(url, session) as zf:
+        # For read-only ZIP files, ZipFile only needs methods read,
+        # seek, seekable and tell, not the whole IO protocol.
+        wheel = MemoryWheel(zf.name, zf)  # type: ignore
+        # After context manager exit, wheel.name
+        # is an invalid file by intention.
+        return get_wheel_distribution(wheel, canonicalize_name(name))
+
+
+class LazyZipOverHTTP:
+    """File-like object mapped to a ZIP file over HTTP.
+
+    This uses HTTP range requests to lazily fetch the file's content,
+    which is supposed to be fed to ZipFile.  If such requests are not
+    supported by the server, raise HTTPRangeRequestUnsupported
+    during initialization.
+    """
+
+    def __init__(
+        self, url: str, session: PipSession, chunk_size: int = CONTENT_CHUNK_SIZE
+    ) -> None:
+        head = session.head(url, headers=HEADERS)
+        raise_for_status(head)
+        assert head.status_code == 200
+        self._session, self._url, self._chunk_size = session, url, chunk_size
+        self._length = int(head.headers["Content-Length"])
+        self._file = NamedTemporaryFile()
+        self.truncate(self._length)
+        self._left: List[int] = []
+        self._right: List[int] = []
+        if "bytes" not in head.headers.get("Accept-Ranges", "none"):
+            raise HTTPRangeRequestUnsupported("range request is not supported")
+        self._check_zip()
+
+    @property
+    def mode(self) -> str:
+        """Opening mode, which is always rb."""
+        return "rb"
+
+    @property
+    def name(self) -> str:
+        """Path to the underlying file."""
+        return self._file.name
+
+    def seekable(self) -> bool:
+        """Return whether random access is supported, which is True."""
+        return True
+
+    def close(self) -> None:
+        """Close the file."""
+        self._file.close()
+
+    @property
+    def closed(self) -> bool:
+        """Whether the file is closed."""
+        return self._file.closed
+
+    def read(self, size: int = -1) -> bytes:
+        """Read up to size bytes from the object and return them.
+
+        As a convenience, if size is unspecified or -1,
+        all bytes until EOF are returned.  Fewer than
+        size bytes may be returned if EOF is reached.
+        """
+        download_size = max(size, self._chunk_size)
+        start, length = self.tell(), self._length
+        stop = length if size < 0 else min(start + download_size, length)
+        start = max(0, stop - download_size)
+        self._download(start, stop - 1)
+        return self._file.read(size)
+
+    def readable(self) -> bool:
+        """Return whether the file is readable, which is True."""
+        return True
+
+    def seek(self, offset: int, whence: int = 0) -> int:
+        """Change stream position and return the new absolute position.
+
+        Seek to offset relative position indicated by whence:
+        * 0: Start of stream (the default).  pos should be >= 0;
+        * 1: Current position - pos may be negative;
+        * 2: End of stream - pos usually negative.
+        """
+        return self._file.seek(offset, whence)
+
+    def tell(self) -> int:
+        """Return the current position."""
+        return self._file.tell()
+
+    def truncate(self, size: Optional[int] = None) -> int:
+        """Resize the stream to the given size in bytes.
+
+        If size is unspecified resize to the current position.
+        The current stream position isn't changed.
+
+        Return the new file size.
+        """
+        return self._file.truncate(size)
+
+    def writable(self) -> bool:
+        """Return False."""
+        return False
+
+    def __enter__(self) -> "LazyZipOverHTTP":
+        self._file.__enter__()
+        return self
+
+    def __exit__(self, *exc: Any) -> None:
+        self._file.__exit__(*exc)
+
+    @contextmanager
+    def _stay(self) -> Generator[None, None, None]:
+        """Return a context manager keeping the position.
+
+        At the end of the block, seek back to original position.
+        """
+        pos = self.tell()
+        try:
+            yield
+        finally:
+            self.seek(pos)
+
+    def _check_zip(self) -> None:
+        """Check and download until the file is a valid ZIP."""
+        end = self._length - 1
+        for start in reversed(range(0, end, self._chunk_size)):
+            self._download(start, end)
+            with self._stay():
+                try:
+                    # For read-only ZIP files, ZipFile only needs
+                    # methods read, seek, seekable and tell.
+                    ZipFile(self)  # type: ignore
+                except BadZipFile:
+                    pass
+                else:
+                    break
+
+    def _stream_response(
+        self, start: int, end: int, base_headers: Dict[str, str] = HEADERS
+    ) -> Response:
+        """Return HTTP response to a range request from start to end."""
+        headers = base_headers.copy()
+        headers["Range"] = f"bytes={start}-{end}"
+        # TODO: Get range requests to be correctly cached
+        headers["Cache-Control"] = "no-cache"
+        return self._session.get(self._url, headers=headers, stream=True)
+
+    def _merge(
+        self, start: int, end: int, left: int, right: int
+    ) -> Generator[Tuple[int, int], None, None]:
+        """Return a generator of intervals to be fetched.
+
+        Args:
+            start (int): Start of needed interval
+            end (int): End of needed interval
+            left (int): Index of first overlapping downloaded data
+            right (int): Index after last overlapping downloaded data
+        """
+        lslice, rslice = self._left[left:right], self._right[left:right]
+        i = start = min([start] + lslice[:1])
+        end = max([end] + rslice[-1:])
+        for j, k in zip(lslice, rslice):
+            if j > i:
+                yield i, j - 1
+            i = k + 1
+        if i <= end:
+            yield i, end
+        self._left[left:right], self._right[left:right] = [start], [end]
+
+    def _download(self, start: int, end: int) -> None:
+        """Download bytes from start to end inclusively."""
+        with self._stay():
+            left = bisect_left(self._right, start)
+            right = bisect_right(self._left, end)
+            for start, end in self._merge(start, end, left, right):
+                response = self._stream_response(start, end)
+                response.raise_for_status()
+                self.seek(start)
+                for chunk in response_chunks(response, self._chunk_size):
+                    self._file.write(chunk)

galaxy/lib/python3.12/site-packages/pip/_internal/network/session.py

@@ -0,0 +1,520 @@
+"""PipSession and supporting code, containing all pip-specific
+network request configuration and behavior.
+"""
+
+import email.utils
+import io
+import ipaddress
+import json
+import logging
+import mimetypes
+import os
+import platform
+import shutil
+import subprocess
+import sys
+import urllib.parse
+import warnings
+from typing import (
+    TYPE_CHECKING,
+    Any,
+    Dict,
+    Generator,
+    List,
+    Mapping,
+    Optional,
+    Sequence,
+    Tuple,
+    Union,
+)
+
+from pip._vendor import requests, urllib3
+from pip._vendor.cachecontrol import CacheControlAdapter as _BaseCacheControlAdapter
+from pip._vendor.requests.adapters import DEFAULT_POOLBLOCK, BaseAdapter
+from pip._vendor.requests.adapters import HTTPAdapter as _BaseHTTPAdapter
+from pip._vendor.requests.models import PreparedRequest, Response
+from pip._vendor.requests.structures import CaseInsensitiveDict
+from pip._vendor.urllib3.connectionpool import ConnectionPool
+from pip._vendor.urllib3.exceptions import InsecureRequestWarning
+
+from pip import __version__
+from pip._internal.metadata import get_default_environment
+from pip._internal.models.link import Link
+from pip._internal.network.auth import MultiDomainBasicAuth
+from pip._internal.network.cache import SafeFileCache
+
+# Import ssl from compat so the initial import occurs in only one place.
+from pip._internal.utils.compat import has_tls
+from pip._internal.utils.glibc import libc_ver
+from pip._internal.utils.misc import build_url_from_netloc, parse_netloc
+from pip._internal.utils.urls import url_to_path
+
+if TYPE_CHECKING:
+    from ssl import SSLContext
+
+    from pip._vendor.urllib3.poolmanager import PoolManager
+
+
+logger = logging.getLogger(__name__)
+
+SecureOrigin = Tuple[str, str, Optional[Union[int, str]]]
+
+
+# Ignore warning raised when using --trusted-host.
+warnings.filterwarnings("ignore", category=InsecureRequestWarning)
+
+
+SECURE_ORIGINS: List[SecureOrigin] = [
+    # protocol, hostname, port
+    # Taken from Chrome's list of secure origins (See: http://bit.ly/1qrySKC)
+    ("https", "*", "*"),
+    ("*", "localhost", "*"),
+    ("*", "127.0.0.0/8", "*"),
+    ("*", "::1/128", "*"),
+    ("file", "*", None),
+    # ssh is always secure.
+    ("ssh", "*", "*"),
+]
+
+
+# These are environment variables present when running under various
+# CI systems.  For each variable, some CI systems that use the variable
+# are indicated.  The collection was chosen so that for each of a number
+# of popular systems, at least one of the environment variables is used.
+# This list is used to provide some indication of and lower bound for
+# CI traffic to PyPI.  Thus, it is okay if the list is not comprehensive.
+# For more background, see: https://github.com/pypa/pip/issues/5499
+CI_ENVIRONMENT_VARIABLES = (
+    # Azure Pipelines
+    "BUILD_BUILDID",
+    # Jenkins
+    "BUILD_ID",
+    # AppVeyor, CircleCI, Codeship, Gitlab CI, Shippable, Travis CI
+    "CI",
+    # Explicit environment variable.
+    "PIP_IS_CI",
+)
+
+
+def looks_like_ci() -> bool:
+    """
+    Return whether it looks like pip is running under CI.
+    """
+    # We don't use the method of checking for a tty (e.g. using isatty())
+    # because some CI systems mimic a tty (e.g. Travis CI).  Thus that
+    # method doesn't provide definitive information in either direction.
+    return any(name in os.environ for name in CI_ENVIRONMENT_VARIABLES)
+
+
+def user_agent() -> str:
+    """
+    Return a string representing the user agent.
+    """
+    data: Dict[str, Any] = {
+        "installer": {"name": "pip", "version": __version__},
+        "python": platform.python_version(),
+        "implementation": {
+            "name": platform.python_implementation(),
+        },
+    }
+
+    if data["implementation"]["name"] == "CPython":
+        data["implementation"]["version"] = platform.python_version()
+    elif data["implementation"]["name"] == "PyPy":
+        pypy_version_info = sys.pypy_version_info  # type: ignore
+        if pypy_version_info.releaselevel == "final":
+            pypy_version_info = pypy_version_info[:3]
+        data["implementation"]["version"] = ".".join(
+            [str(x) for x in pypy_version_info]
+        )
+    elif data["implementation"]["name"] == "Jython":
+        # Complete Guess
+        data["implementation"]["version"] = platform.python_version()
+    elif data["implementation"]["name"] == "IronPython":
+        # Complete Guess
+        data["implementation"]["version"] = platform.python_version()
+
+    if sys.platform.startswith("linux"):
+        from pip._vendor import distro
+
+        linux_distribution = distro.name(), distro.version(), distro.codename()
+        distro_infos: Dict[str, Any] = dict(
+            filter(
+                lambda x: x[1],
+                zip(["name", "version", "id"], linux_distribution),
+            )
+        )
+        libc = dict(
+            filter(
+                lambda x: x[1],
+                zip(["lib", "version"], libc_ver()),
+            )
+        )
+        if libc:
+            distro_infos["libc"] = libc
+        if distro_infos:
+            data["distro"] = distro_infos
+
+    if sys.platform.startswith("darwin") and platform.mac_ver()[0]:
+        data["distro"] = {"name": "macOS", "version": platform.mac_ver()[0]}
+
+    if platform.system():
+        data.setdefault("system", {})["name"] = platform.system()
+
+    if platform.release():
+        data.setdefault("system", {})["release"] = platform.release()
+
+    if platform.machine():
+        data["cpu"] = platform.machine()
+
+    if has_tls():
+        import _ssl as ssl
+
+        data["openssl_version"] = ssl.OPENSSL_VERSION
+
+    setuptools_dist = get_default_environment().get_distribution("setuptools")
+    if setuptools_dist is not None:
+        data["setuptools_version"] = str(setuptools_dist.version)
+
+    if shutil.which("rustc") is not None:
+        # If for any reason `rustc --version` fails, silently ignore it
+        try:
+            rustc_output = subprocess.check_output(
+                ["rustc", "--version"], stderr=subprocess.STDOUT, timeout=0.5
+            )
+        except Exception:
+            pass
+        else:
+            if rustc_output.startswith(b"rustc "):
+                # The format of `rustc --version` is:
+                # `b'rustc 1.52.1 (9bc8c42bb 2021-05-09)\n'`
+                # We extract just the middle (1.52.1) part
+                data["rustc_version"] = rustc_output.split(b" ")[1].decode()
+
+    # Use None rather than False so as not to give the impression that
+    # pip knows it is not being run under CI.  Rather, it is a null or
+    # inconclusive result.  Also, we include some value rather than no
+    # value to make it easier to know that the check has been run.
+    data["ci"] = True if looks_like_ci() else None
+
+    user_data = os.environ.get("PIP_USER_AGENT_USER_DATA")
+    if user_data is not None:
+        data["user_data"] = user_data
+
+    return "{data[installer][name]}/{data[installer][version]} {json}".format(
+        data=data,
+        json=json.dumps(data, separators=(",", ":"), sort_keys=True),
+    )
+
+
+class LocalFSAdapter(BaseAdapter):
+    def send(
+        self,
+        request: PreparedRequest,
+        stream: bool = False,
+        timeout: Optional[Union[float, Tuple[float, float]]] = None,
+        verify: Union[bool, str] = True,
+        cert: Optional[Union[str, Tuple[str, str]]] = None,
+        proxies: Optional[Mapping[str, str]] = None,
+    ) -> Response:
+        pathname = url_to_path(request.url)
+
+        resp = Response()
+        resp.status_code = 200
+        resp.url = request.url
+
+        try:
+            stats = os.stat(pathname)
+        except OSError as exc:
+            # format the exception raised as a io.BytesIO object,
+            # to return a better error message:
+            resp.status_code = 404
+            resp.reason = type(exc).__name__
+            resp.raw = io.BytesIO(f"{resp.reason}: {exc}".encode("utf8"))
+        else:
+            modified = email.utils.formatdate(stats.st_mtime, usegmt=True)
+            content_type = mimetypes.guess_type(pathname)[0] or "text/plain"
+            resp.headers = CaseInsensitiveDict(
+                {
+                    "Content-Type": content_type,
+                    "Content-Length": stats.st_size,
+                    "Last-Modified": modified,
+                }
+            )
+
+            resp.raw = open(pathname, "rb")
+            resp.close = resp.raw.close
+
+        return resp
+
+    def close(self) -> None:
+        pass
+
+
+class _SSLContextAdapterMixin:
+    """Mixin to add the ``ssl_context`` constructor argument to HTTP adapters.
+
+    The additional argument is forwarded directly to the pool manager. This allows us
+    to dynamically decide what SSL store to use at runtime, which is used to implement
+    the optional ``truststore`` backend.
+    """
+
+    def __init__(
+        self,
+        *,
+        ssl_context: Optional["SSLContext"] = None,
+        **kwargs: Any,
+    ) -> None:
+        self._ssl_context = ssl_context
+        super().__init__(**kwargs)
+
+    def init_poolmanager(
+        self,
+        connections: int,
+        maxsize: int,
+        block: bool = DEFAULT_POOLBLOCK,
+        **pool_kwargs: Any,
+    ) -> "PoolManager":
+        if self._ssl_context is not None:
+            pool_kwargs.setdefault("ssl_context", self._ssl_context)
+        return super().init_poolmanager(  # type: ignore[misc]
+            connections=connections,
+            maxsize=maxsize,
+            block=block,
+            **pool_kwargs,
+        )
+
+
+class HTTPAdapter(_SSLContextAdapterMixin, _BaseHTTPAdapter):
+    pass
+
+
+class CacheControlAdapter(_SSLContextAdapterMixin, _BaseCacheControlAdapter):
+    pass
+
+
+class InsecureHTTPAdapter(HTTPAdapter):
+    def cert_verify(
+        self,
+        conn: ConnectionPool,
+        url: str,
+        verify: Union[bool, str],
+        cert: Optional[Union[str, Tuple[str, str]]],
+    ) -> None:
+        super().cert_verify(conn=conn, url=url, verify=False, cert=cert)
+
+
+class InsecureCacheControlAdapter(CacheControlAdapter):
+    def cert_verify(
+        self,
+        conn: ConnectionPool,
+        url: str,
+        verify: Union[bool, str],
+        cert: Optional[Union[str, Tuple[str, str]]],
+    ) -> None:
+        super().cert_verify(conn=conn, url=url, verify=False, cert=cert)
+
+
+class PipSession(requests.Session):
+    timeout: Optional[int] = None
+
+    def __init__(
+        self,
+        *args: Any,
+        retries: int = 0,
+        cache: Optional[str] = None,
+        trusted_hosts: Sequence[str] = (),
+        index_urls: Optional[List[str]] = None,
+        ssl_context: Optional["SSLContext"] = None,
+        **kwargs: Any,
+    ) -> None:
+        """
+        :param trusted_hosts: Domains not to emit warnings for when not using
+            HTTPS.
+        """
+        super().__init__(*args, **kwargs)
+
+        # Namespace the attribute with "pip_" just in case to prevent
+        # possible conflicts with the base class.
+        self.pip_trusted_origins: List[Tuple[str, Optional[int]]] = []
+
+        # Attach our User Agent to the request
+        self.headers["User-Agent"] = user_agent()
+
+        # Attach our Authentication handler to the session
+        self.auth = MultiDomainBasicAuth(index_urls=index_urls)
+
+        # Create our urllib3.Retry instance which will allow us to customize
+        # how we handle retries.
+        retries = urllib3.Retry(
+            # Set the total number of retries that a particular request can
+            # have.
+            total=retries,
+            # A 503 error from PyPI typically means that the Fastly -> Origin
+            # connection got interrupted in some way. A 503 error in general
+            # is typically considered a transient error so we'll go ahead and
+            # retry it.
+            # A 500 may indicate transient error in Amazon S3
+            # A 502 may be a transient error from a CDN like CloudFlare or CloudFront
+            # A 520 or 527 - may indicate transient error in CloudFlare
+            status_forcelist=[500, 502, 503, 520, 527],
+            # Add a small amount of back off between failed requests in
+            # order to prevent hammering the service.
+            backoff_factor=0.25,
+        )  # type: ignore
+
+        # Our Insecure HTTPAdapter disables HTTPS validation. It does not
+        # support caching so we'll use it for all http:// URLs.
+        # If caching is disabled, we will also use it for
+        # https:// hosts that we've marked as ignoring
+        # TLS errors for (trusted-hosts).
+        insecure_adapter = InsecureHTTPAdapter(max_retries=retries)
+
+        # We want to _only_ cache responses on securely fetched origins or when
+        # the host is specified as trusted. We do this because
+        # we can't validate the response of an insecurely/untrusted fetched
+        # origin, and we don't want someone to be able to poison the cache and
+        # require manual eviction from the cache to fix it.
+        if cache:
+            secure_adapter = CacheControlAdapter(
+                cache=SafeFileCache(cache),
+                max_retries=retries,
+                ssl_context=ssl_context,
+            )
+            self._trusted_host_adapter = InsecureCacheControlAdapter(
+                cache=SafeFileCache(cache),
+                max_retries=retries,
+            )
+        else:
+            secure_adapter = HTTPAdapter(max_retries=retries, ssl_context=ssl_context)
+            self._trusted_host_adapter = insecure_adapter
+
+        self.mount("https://", secure_adapter)
+        self.mount("http://", insecure_adapter)
+
+        # Enable file:// urls
+        self.mount("file://", LocalFSAdapter())
+
+        for host in trusted_hosts:
+            self.add_trusted_host(host, suppress_logging=True)
+
+    def update_index_urls(self, new_index_urls: List[str]) -> None:
+        """
+        :param new_index_urls: New index urls to update the authentication
+            handler with.
+        """
+        self.auth.index_urls = new_index_urls
+
+    def add_trusted_host(
+        self, host: str, source: Optional[str] = None, suppress_logging: bool = False
+    ) -> None:
+        """
+        :param host: It is okay to provide a host that has previously been
+            added.
+        :param source: An optional source string, for logging where the host
+            string came from.
+        """
+        if not suppress_logging:
+            msg = f"adding trusted host: {host!r}"
+            if source is not None:
+                msg += f" (from {source})"
+            logger.info(msg)
+
+        parsed_host, parsed_port = parse_netloc(host)
+        if parsed_host is None:
+            raise ValueError(f"Trusted host URL must include a host part: {host!r}")
+        if (parsed_host, parsed_port) not in self.pip_trusted_origins:
+            self.pip_trusted_origins.append((parsed_host, parsed_port))
+
+        self.mount(
+            build_url_from_netloc(host, scheme="http") + "/", self._trusted_host_adapter
+        )
+        self.mount(build_url_from_netloc(host) + "/", self._trusted_host_adapter)
+        if not parsed_port:
+            self.mount(
+                build_url_from_netloc(host, scheme="http") + ":",
+                self._trusted_host_adapter,
+            )
+            # Mount wildcard ports for the same host.
+            self.mount(build_url_from_netloc(host) + ":", self._trusted_host_adapter)
+
+    def iter_secure_origins(self) -> Generator[SecureOrigin, None, None]:
+        yield from SECURE_ORIGINS
+        for host, port in self.pip_trusted_origins:
+            yield ("*", host, "*" if port is None else port)
+
+    def is_secure_origin(self, location: Link) -> bool:
+        # Determine if this url used a secure transport mechanism
+        parsed = urllib.parse.urlparse(str(location))
+        origin_protocol, origin_host, origin_port = (
+            parsed.scheme,
+            parsed.hostname,
+            parsed.port,
+        )
+
+        # The protocol to use to see if the protocol matches.
+        # Don't count the repository type as part of the protocol: in
+        # cases such as "git+ssh", only use "ssh". (I.e., Only verify against
+        # the last scheme.)
+        origin_protocol = origin_protocol.rsplit("+", 1)[-1]
+
+        # Determine if our origin is a secure origin by looking through our
+        # hardcoded list of secure origins, as well as any additional ones
+        # configured on this PackageFinder instance.
+        for secure_origin in self.iter_secure_origins():
+            secure_protocol, secure_host, secure_port = secure_origin
+            if origin_protocol != secure_protocol and secure_protocol != "*":
+                continue
+
+            try:
+                addr = ipaddress.ip_address(origin_host or "")
+                network = ipaddress.ip_network(secure_host)
+            except ValueError:
+                # We don't have both a valid address or a valid network, so
+                # we'll check this origin against hostnames.
+                if (
+                    origin_host
+                    and origin_host.lower() != secure_host.lower()
+                    and secure_host != "*"
+                ):
+                    continue
+            else:
+                # We have a valid address and network, so see if the address
+                # is contained within the network.
+                if addr not in network:
+                    continue
+
+            # Check to see if the port matches.
+            if (
+                origin_port != secure_port
+                and secure_port != "*"
+                and secure_port is not None
+            ):
+                continue
+
+            # If we've gotten here, then this origin matches the current
+            # secure origin and we should return True
+            return True
+
+        # If we've gotten to this point, then the origin isn't secure and we
+        # will not accept it as a valid location to search. We will however
+        # log a warning that we are ignoring it.
+        logger.warning(
+            "The repository located at %s is not a trusted or secure host and "
+            "is being ignored. If this repository is available via HTTPS we "
+            "recommend you use HTTPS instead, otherwise you may silence "
+            "this warning and allow it anyway with '--trusted-host %s'.",
+            origin_host,
+            origin_host,
+        )
+
+        return False
+
+    def request(self, method: str, url: str, *args: Any, **kwargs: Any) -> Response:
+        # Allow setting a default timeout on a session
+        kwargs.setdefault("timeout", self.timeout)
+        # Allow setting a default proxies on a session
+        kwargs.setdefault("proxies", self.proxies)
+
+        # Dispatch the actual request
+        return super().request(method, url, *args, **kwargs)

galaxy/lib/python3.12/site-packages/pip/_internal/network/utils.py

@@ -0,0 +1,96 @@
+from typing import Dict, Generator
+
+from pip._vendor.requests.models import CONTENT_CHUNK_SIZE, Response
+
+from pip._internal.exceptions import NetworkConnectionError
+
+# The following comments and HTTP headers were originally added by
+# Donald Stufft in git commit 22c562429a61bb77172039e480873fb239dd8c03.
+#
+# We use Accept-Encoding: identity here because requests defaults to
+# accepting compressed responses. This breaks in a variety of ways
+# depending on how the server is configured.
+# - Some servers will notice that the file isn't a compressible file
+#   and will leave the file alone and with an empty Content-Encoding
+# - Some servers will notice that the file is already compressed and
+#   will leave the file alone, adding a Content-Encoding: gzip header
+# - Some servers won't notice anything at all and will take a file
+#   that's already been compressed and compress it again, and set
+#   the Content-Encoding: gzip header
+# By setting this to request only the identity encoding we're hoping
+# to eliminate the third case.  Hopefully there does not exist a server
+# which when given a file will notice it is already compressed and that
+# you're not asking for a compressed file and will then decompress it
+# before sending because if that's the case I don't think it'll ever be
+# possible to make this work.
+HEADERS: Dict[str, str] = {"Accept-Encoding": "identity"}
+
+
+def raise_for_status(resp: Response) -> None:
+    http_error_msg = ""
+    if isinstance(resp.reason, bytes):
+        # We attempt to decode utf-8 first because some servers
+        # choose to localize their reason strings. If the string
+        # isn't utf-8, we fall back to iso-8859-1 for all other
+        # encodings.
+        try:
+            reason = resp.reason.decode("utf-8")
+        except UnicodeDecodeError:
+            reason = resp.reason.decode("iso-8859-1")
+    else:
+        reason = resp.reason
+
+    if 400 <= resp.status_code < 500:
+        http_error_msg = (
+            f"{resp.status_code} Client Error: {reason} for url: {resp.url}"
+        )
+
+    elif 500 <= resp.status_code < 600:
+        http_error_msg = (
+            f"{resp.status_code} Server Error: {reason} for url: {resp.url}"
+        )
+
+    if http_error_msg:
+        raise NetworkConnectionError(http_error_msg, response=resp)
+
+
+def response_chunks(
+    response: Response, chunk_size: int = CONTENT_CHUNK_SIZE
+) -> Generator[bytes, None, None]:
+    """Given a requests Response, provide the data chunks."""
+    try:
+        # Special case for urllib3.
+        for chunk in response.raw.stream(
+            chunk_size,
+            # We use decode_content=False here because we don't
+            # want urllib3 to mess with the raw bytes we get
+            # from the server. If we decompress inside of
+            # urllib3 then we cannot verify the checksum
+            # because the checksum will be of the compressed
+            # file. This breakage will only occur if the
+            # server adds a Content-Encoding header, which
+            # depends on how the server was configured:
+            # - Some servers will notice that the file isn't a
+            #   compressible file and will leave the file alone
+            #   and with an empty Content-Encoding
+            # - Some servers will notice that the file is
+            #   already compressed and will leave the file
+            #   alone and will add a Content-Encoding: gzip
+            #   header
+            # - Some servers won't notice anything at all and
+            #   will take a file that's already been compressed
+            #   and compress it again and set the
+            #   Content-Encoding: gzip header
+            #
+            # By setting this not to decode automatically we
+            # hope to eliminate problems with the second case.
+            decode_content=False,
+        ):
+            yield chunk
+    except AttributeError:
+        # Standard file-like object.
+        while True:
+            chunk = response.raw.read(chunk_size)
+            if not chunk:
+                break
+            yield chunk

galaxy/lib/python3.12/site-packages/pip/_internal/network/xmlrpc.py

@@ -0,0 +1,62 @@
+"""xmlrpclib.Transport implementation
+"""
+
+import logging
+import urllib.parse
+import xmlrpc.client
+from typing import TYPE_CHECKING, Tuple
+
+from pip._internal.exceptions import NetworkConnectionError
+from pip._internal.network.session import PipSession
+from pip._internal.network.utils import raise_for_status
+
+if TYPE_CHECKING:
+    from xmlrpc.client import _HostType, _Marshallable
+
+    from _typeshed import SizedBuffer
+
+logger = logging.getLogger(__name__)
+
+
+class PipXmlrpcTransport(xmlrpc.client.Transport):
+    """Provide a `xmlrpclib.Transport` implementation via a `PipSession`
+    object.
+    """
+
+    def __init__(
+        self, index_url: str, session: PipSession, use_datetime: bool = False
+    ) -> None:
+        super().__init__(use_datetime)
+        index_parts = urllib.parse.urlparse(index_url)
+        self._scheme = index_parts.scheme
+        self._session = session
+
+    def request(
+        self,
+        host: "_HostType",
+        handler: str,
+        request_body: "SizedBuffer",
+        verbose: bool = False,
+    ) -> Tuple["_Marshallable", ...]:
+        assert isinstance(host, str)
+        parts = (self._scheme, host, handler, None, None, None)
+        url = urllib.parse.urlunparse(parts)
+        try:
+            headers = {"Content-Type": "text/xml"}
+            response = self._session.post(
+                url,
+                data=request_body,
+                headers=headers,
+                stream=True,
+            )
+            raise_for_status(response)
+            self.verbose = verbose
+            return self.parse_response(response.raw)
+        except NetworkConnectionError as exc:
+            assert exc.response
+            logger.critical(
+                "HTTP error %s while getting %s",
+                exc.response.status_code,
+                url,
+            )
+            raise